Wall clock time and date at job start Tue Mar 31 2020 07:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33459 * 126.82740 * 2 1 4 4 N 1.28527 * 109.36952 * 180.31553 * 3 2 1 5 5 N 1.28711 * 110.61891 * 359.72790 * 4 3 2 6 6 H 0.97001 * 126.00092 * 179.97438 * 5 4 3 7 7 C 1.36835 * 107.99208 * 0.02562 * 5 4 3 8 8 C 1.47405 * 127.16452 * 179.97438 * 7 5 4 9 9 N 1.31400 * 126.48961 * 174.75588 * 8 7 5 10 10 N 1.28511 * 109.92538 * 179.82337 * 9 8 7 11 11 C 1.31375 * 110.11279 * 0.44948 * 10 9 8 12 12 N 1.38408 * 126.35576 * 179.74728 * 11 10 9 13 13 C 1.46907 * 110.99750 * 236.02230 * 12 11 10 14 14 C 1.46895 * 111.00466 * 359.97438 * 12 11 10 15 15 H 1.09001 * 109.47336 * 300.00417 * 14 12 11 16 16 C 1.53003 * 109.46966 * 59.99515 * 14 12 11 17 17 C 1.50703 * 109.47459 * 179.97438 * 14 12 11 18 18 H 1.07995 * 119.99456 * 0.02562 * 17 14 12 19 19 C 1.37876 * 120.00054 * 180.02562 * 17 14 12 20 20 N 1.31512 * 120.00153 * 180.02562 * 19 17 14 21 21 Si 1.86809 * 119.99994 * 359.97438 * 19 17 14 22 22 H 1.48493 * 109.46899 * 89.99961 * 21 19 17 23 23 H 1.48496 * 109.47074 * 210.00150 * 21 19 17 24 24 H 1.48504 * 109.46775 * 329.99907 * 21 19 17 25 25 N 1.36505 * 107.28395 * 359.73054 * 11 10 9 26 26 C 1.46504 * 127.17419 * 180.02562 * 25 11 10 27 27 H 1.08997 * 109.46734 * 270.13792 * 1 2 3 28 28 H 1.09000 * 109.47016 * 30.13547 * 1 2 3 29 29 H 1.09000 * 109.47598 * 150.13877 * 1 2 3 30 30 H 1.08999 * 109.47198 * 60.00812 * 13 12 11 31 31 H 1.09004 * 109.46513 * 180.02562 * 13 12 11 32 32 H 1.08996 * 109.47228 * 299.99945 * 13 12 11 33 33 H 1.09009 * 109.46633 * 60.00414 * 16 14 12 34 34 H 1.08993 * 109.47322 * 179.97438 * 16 14 12 35 35 H 1.08996 * 109.47528 * 300.00369 * 16 14 12 36 36 H 0.96996 * 120.00230 * 180.02562 * 20 19 17 37 37 H 1.08999 * 109.47118 * 264.26338 * 26 25 11 38 38 H 1.09004 * 109.46628 * 24.25728 * 26 25 11 39 39 H 1.08992 * 109.47463 * 144.25455 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3069 1.0683 0.0000 4 7 3.5330 0.6827 -0.0067 5 7 3.6040 -0.6025 -0.0055 6 1 4.4190 -1.1285 -0.0100 7 6 2.3279 -1.0963 0.0020 8 6 1.9213 -2.5131 0.0053 9 7 0.6952 -2.9740 0.1090 10 7 0.7056 -4.2585 0.0728 11 6 1.9382 -4.6971 -0.0465 12 7 2.3350 -6.0215 -0.1125 13 6 3.3174 -6.3295 0.9355 14 6 1.1779 -6.9226 -0.0305 15 1 0.6572 -6.7604 0.9132 16 6 0.2258 -6.6371 -1.1937 17 6 1.6482 -8.3524 -0.1062 18 1 2.7014 -8.5698 -0.2048 19 6 0.7338 -9.3828 -0.0494 20 7 1.1443 -10.6305 -0.1149 21 14 -1.0879 -9.0066 0.1219 22 1 -1.6948 -8.8734 -1.2268 23 1 -1.7543 -10.1109 0.8578 24 1 -1.2627 -7.7363 0.8710 25 7 2.7548 -3.6043 -0.0936 26 6 4.2140 -3.5945 -0.2232 27 1 -0.3633 0.0025 1.0277 28 1 -0.3633 0.8888 -0.5159 29 1 -0.3634 -0.8912 -0.5117 30 1 2.8742 -6.1459 1.9142 31 1 3.6125 -7.3761 0.8604 32 1 4.1946 -5.6950 0.8090 33 1 0.7465 -6.7993 -2.1376 34 1 -0.6326 -7.3061 -1.1332 35 1 -0.1144 -5.6031 -1.1395 36 1 0.5010 -11.3554 -0.0754 37 1 4.6660 -3.5131 0.7653 38 1 4.5428 -4.5190 -0.6980 39 1 4.5190 -2.7444 -0.8333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121372796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:32 Heat of formation + Delta-G solvation = 186.903999 kcal Electronic energy + Delta-G solvation = -23697.229136 eV Core-core repulsion = 20293.223100 eV Total energy + Delta-G solvation = -3404.006036 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.61282 -43.91887 -39.18162 -36.49843 -35.04604 -34.92167 -33.97302 -32.10928 -30.82467 -29.26752 -28.44861 -27.32506 -26.18740 -24.76951 -24.15109 -23.24108 -22.00107 -21.14854 -19.36700 -19.05280 -18.00094 -17.90716 -17.36966 -17.08690 -16.67296 -16.45932 -15.77899 -15.21329 -14.81807 -14.78160 -14.52126 -14.15009 -13.98723 -13.94707 -13.59259 -13.55458 -13.03757 -12.93522 -12.86787 -12.51878 -12.40396 -12.24024 -12.11442 -12.03541 -11.67708 -11.51621 -11.41331 -11.21137 -10.97938 -10.77670 -10.18736 -9.06776 -8.33674 -6.38017 -0.35117 0.82982 0.92417 1.24906 1.29232 1.31292 1.38051 1.47321 1.81234 2.29374 2.65592 2.88243 3.02619 3.27123 3.38435 3.62640 3.81521 3.88027 4.04758 4.15574 4.32530 4.39581 4.52505 4.54926 4.62738 4.65534 4.68659 4.79156 4.84802 4.97725 4.98111 5.06992 5.25356 5.34548 5.43910 5.49999 5.60465 5.71241 6.04025 6.42493 6.66065 7.12934 7.26762 7.55104 8.80633 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.030821 B = 0.004263 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.262357 B = 6566.245758 C = 7316.273307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.036 3.964 3 N -0.282 5.282 4 N -0.059 5.059 5 N -0.367 5.367 6 H 0.462 0.538 7 C 0.058 3.942 8 C 0.226 3.774 9 N -0.263 5.263 10 N -0.350 5.350 11 C 0.390 3.610 12 N -0.445 5.445 13 C 0.029 3.971 14 C 0.208 3.792 15 H 0.007 0.993 16 C -0.151 4.151 17 C -0.513 4.513 18 H 0.065 0.935 19 C 0.033 3.967 20 N -0.934 5.934 21 Si 0.931 3.069 22 H -0.268 1.268 23 H -0.295 1.295 24 H -0.258 1.258 25 N -0.480 5.480 26 C 0.048 3.952 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.030 0.970 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.269 0.731 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.347 18.510 0.926 19.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 N -0.150 5.150 4 N -0.039 5.039 5 N -0.096 5.096 6 H 0.313 0.687 7 C -0.076 4.076 8 C -0.041 4.041 9 N -0.105 5.105 10 N -0.196 5.196 11 C 0.033 3.967 12 N -0.168 5.168 13 C -0.117 4.117 14 C 0.102 3.898 15 H 0.024 0.976 16 C -0.209 4.209 17 C -0.552 4.552 18 H 0.083 0.917 19 C -0.167 4.167 20 N -0.573 5.573 21 Si 0.759 3.241 22 H -0.195 1.195 23 H -0.222 1.222 24 H -0.182 1.182 25 N -0.176 5.176 26 C -0.093 4.093 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.049 0.951 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.825 19.565 0.616 20.731 hybrid contribution 0.241 -1.886 0.405 1.944 sum 7.066 17.680 1.021 19.067 Atomic orbital electron populations 1.20282 0.83801 1.04468 1.04347 1.22492 0.99371 0.86438 1.02228 1.74962 0.95561 1.26366 1.18067 1.78145 1.15761 0.92147 1.17895 1.45382 1.08309 1.06559 1.49387 0.68666 1.18456 0.85798 0.89190 1.14158 1.20947 0.87507 0.85794 1.09853 1.74276 1.16902 1.02718 1.16632 1.74757 1.16928 1.02876 1.25069 1.22972 0.86680 0.88232 0.98795 1.58659 1.16663 0.95372 1.46088 1.22627 0.94039 1.04818 0.90195 1.19470 0.85892 0.89916 0.94567 0.97575 1.22254 0.98236 1.01333 0.99073 1.21042 0.95241 0.88432 1.50452 0.91735 1.25452 1.02369 0.94658 0.94207 1.69950 1.36241 0.99571 1.51552 0.86120 0.81569 0.77691 0.78743 1.19462 1.22209 1.18214 1.46194 1.10168 1.04008 1.57250 1.22782 0.73101 1.07312 1.06067 0.89263 0.88908 0.89888 0.95148 0.89308 0.88080 0.93193 0.94489 0.90867 0.92193 0.86585 0.86691 0.87640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 10.03 71.24 0.71 -0.71 16 2 C 0.04 0.83 7.30 42.01 0.31 1.14 16 3 N -0.28 -6.93 12.36 -47.84 -0.59 -7.52 16 4 N -0.06 -1.26 13.35 37.02 0.49 -0.77 16 5 N -0.37 -5.96 6.76 -48.54 -0.33 -6.29 16 6 H 0.46 3.65 6.44 -219.90 -1.42 2.23 16 7 C 0.06 1.28 7.12 40.48 0.29 1.57 16 8 C 0.23 6.03 7.89 136.01 1.07 7.10 16 9 N -0.26 -8.86 10.64 -51.01 -0.54 -9.40 16 10 N -0.35 -13.47 8.97 -58.00 -0.52 -13.99 16 11 C 0.39 13.29 6.75 260.10 1.76 15.04 16 12 N -0.45 -16.48 4.64 -710.97 -3.30 -19.78 16 13 C 0.03 0.89 9.03 127.69 1.15 2.05 16 14 C 0.21 9.48 1.32 44.17 0.06 9.54 16 15 H 0.01 0.32 7.17 -2.39 -0.02 0.31 16 16 C -0.15 -6.76 8.47 71.98 0.61 -6.15 16 17 C -0.51 -26.96 8.46 25.60 0.22 -26.74 16 18 H 0.06 3.59 6.65 -2.91 -0.02 3.57 16 19 C 0.03 1.81 5.45 84.65 0.46 2.27 16 20 N -0.93 -54.92 13.96 21.45 0.30 -54.62 16 21 Si 0.93 44.35 24.37 68.60 1.67 46.02 16 22 H -0.27 -12.40 6.87 99.48 0.68 -11.72 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.26 -12.05 6.53 99.48 0.65 -11.40 16 25 N -0.48 -11.73 3.23 -540.37 -1.75 -13.48 16 26 C 0.05 0.58 8.62 127.77 1.10 1.68 16 27 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.89 6.90 -2.39 -0.02 1.87 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 3.09 6.10 -2.38 -0.01 3.08 16 32 H 0.10 2.06 5.38 -2.39 -0.01 2.04 16 33 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.04 1.70 3.27 -2.39 -0.01 1.69 16 35 H 0.07 3.16 5.42 -2.39 -0.01 3.15 16 36 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 37 H 0.12 0.71 8.07 -2.39 -0.02 0.69 16 38 H 0.11 1.44 7.15 -2.38 -0.02 1.42 16 39 H 0.11 0.63 6.31 -2.39 -0.02 0.62 16 Total: -1.00 -71.02 308.94 2.80 -68.22 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -0.38 Total: 4.83 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 7.74 Total: 6.78 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -6.24 Total: -125.85 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.67 Total: 46.02 kcal Total: -71.02 2.80 -68.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121372796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 255.128 kcal (2) G-P(sol) polarization free energy of solvation -71.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds