Wall clock time and date at job start Tue Mar 31 2020 07:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.27450 * 2 1 4 4 O 1.42902 * 109.47167 * 57.91006 * 3 2 1 5 5 C 1.54594 * 110.38939 * 122.14773 * 2 1 3 6 6 C 1.54936 * 102.92333 * 97.00108 * 5 2 1 7 7 N 1.48531 * 103.22725 * 37.41207 * 6 5 2 8 8 C 1.46900 * 111.00319 * 200.28032 * 7 6 5 9 9 C 1.50702 * 109.47036 * 287.39596 * 8 7 6 10 10 C 1.38311 * 119.92915 * 89.99553 * 9 8 7 11 11 C 1.38096 * 120.06782 * 180.02562 * 10 9 8 12 12 C 1.38883 * 119.93001 * 359.97438 * 11 10 9 13 13 O 1.35752 * 120.06733 * 179.72546 * 12 11 10 14 14 C 1.34835 * 116.99867 * 174.45565 * 13 12 11 15 15 H 1.08001 * 119.99908 * 5.03572 * 14 13 12 16 16 C 1.38654 * 119.99862 * 185.04415 * 14 13 12 17 17 N 1.31554 * 119.99970 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99933 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47141 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46901 * 120.00333 * 18 16 14 21 21 H 1.48500 * 109.47422 * 239.99965 * 18 16 14 22 22 C 1.38878 * 119.86281 * 0.02562 * 12 11 10 23 23 C 1.38100 * 119.93217 * 359.97321 * 22 12 11 24 24 C 1.47904 * 105.82200 * 320.79699 * 7 6 5 25 25 H 1.08993 * 109.47263 * 182.08337 * 1 2 3 26 26 H 1.08993 * 109.46945 * 302.09076 * 1 2 3 27 27 H 1.09010 * 109.47006 * 62.08907 * 1 2 3 28 28 H 1.09003 * 109.47291 * 177.90960 * 3 2 1 29 29 H 1.08995 * 109.47324 * 297.91046 * 3 2 1 30 30 H 0.96695 * 114.00202 * 179.97438 * 4 3 2 31 31 H 1.09003 * 110.72249 * 215.36002 * 5 2 1 32 32 H 1.08999 * 110.72512 * 338.46055 * 5 2 1 33 33 H 1.09000 * 110.66928 * 278.97686 * 6 5 2 34 34 H 1.08997 * 110.66920 * 155.84866 * 6 5 2 35 35 H 1.08992 * 109.47390 * 167.39686 * 8 7 6 36 36 H 1.08999 * 109.46842 * 47.39035 * 8 7 6 37 37 H 1.08001 * 119.96634 * 0.02562 * 10 9 8 38 38 H 1.07991 * 120.03444 * 180.02562 * 11 10 9 39 39 H 0.97002 * 120.00599 * 179.97438 * 17 16 14 40 40 H 1.08007 * 120.03391 * 179.97438 * 22 12 11 41 41 H 1.08001 * 119.96661 * 180.02562 * 23 22 12 42 42 H 1.08995 * 109.92336 * 144.68645 * 24 7 6 43 43 H 1.09009 * 109.91272 * 265.77916 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0602 1.4352 0.0000 4 8 1.5539 2.1300 1.1414 5 6 2.0687 -0.7711 1.2269 6 6 2.3619 -2.1788 0.6501 7 7 2.8829 -1.8871 -0.7100 8 6 2.7697 -3.0646 -1.5810 9 6 3.7939 -4.0918 -1.1725 10 6 3.4729 -5.0479 -0.2260 11 6 4.4094 -5.9903 0.1507 12 6 5.6744 -5.9776 -0.4222 13 8 6.5990 -6.8992 -0.0498 14 6 7.7658 -6.9034 -0.7256 15 1 7.9631 -6.1433 -1.4670 16 6 8.7122 -7.8836 -0.4687 17 7 8.4719 -8.8092 0.4347 18 14 10.3283 -7.8898 -1.4054 19 1 10.3527 -6.7509 -2.3579 20 1 11.4558 -7.7580 -0.4479 21 1 10.4615 -9.1651 -2.1543 22 6 5.9937 -5.0163 -1.3723 23 6 5.0528 -4.0766 -1.7449 24 6 2.0646 -0.7672 -1.2236 25 1 -0.3633 -1.0269 0.0374 26 1 -0.3633 0.5459 0.8706 27 1 -0.3633 0.4811 -0.9082 28 1 3.1495 1.4202 0.0375 29 1 1.7349 1.9427 -0.9081 30 1 1.8502 3.0482 1.2064 31 1 2.9824 -0.3098 1.6017 32 1 1.3142 -0.8223 2.0119 33 1 1.4476 -2.7694 0.5933 34 1 3.1151 -2.6907 1.2489 35 1 2.9438 -2.7693 -2.6156 36 1 1.7707 -3.4906 -1.4879 37 1 2.4888 -5.0575 0.2188 38 1 4.1580 -6.7368 0.8895 39 1 9.1338 -9.4952 0.6142 40 1 6.9768 -5.0036 -1.8193 41 1 5.3003 -3.3290 -2.4840 42 1 2.6798 -0.1078 -1.8356 43 1 1.2344 -1.1545 -1.8145 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137115476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:54 Heat of formation + Delta-G solvation = -52.092920 kcal Electronic energy + Delta-G solvation = -22868.114984 eV Core-core repulsion = 19492.700105 eV Total energy + Delta-G solvation = -3375.414879 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.88269 -38.88703 -37.09223 -36.23255 -33.53254 -32.22543 -30.34543 -29.97810 -29.19198 -26.99947 -25.86232 -25.03282 -23.76303 -22.00413 -21.31275 -20.23757 -19.17799 -17.94942 -17.54858 -16.93031 -15.97231 -15.58174 -14.90348 -14.82523 -14.58783 -14.44441 -14.14430 -13.63214 -13.50499 -13.48228 -13.00757 -12.83315 -12.66273 -12.40729 -12.33315 -12.18130 -11.80340 -11.67294 -11.34261 -11.15713 -11.01552 -10.77117 -10.70880 -10.63054 -10.58304 -10.46359 -10.39676 -10.15997 -9.29246 -8.81501 -8.32334 -8.12224 -7.13774 -6.42949 -4.01530 2.26053 2.33104 3.13507 3.15166 3.20790 3.88943 3.98590 4.09804 4.44433 4.51996 4.67315 4.87296 5.08675 5.12608 5.14906 5.24111 5.27039 5.29025 5.30620 5.39672 5.47018 5.52172 5.66827 5.71794 5.76570 5.82062 5.85859 5.91092 5.95586 6.10680 6.13055 6.17623 6.25214 6.45925 6.73774 6.89259 6.99585 7.06973 7.15980 7.29745 7.36233 7.45489 7.48389 7.86971 8.02639 9.03061 9.73917 10.75350 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032450 B = 0.002814 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.659944 B = 9949.143808 C =10129.823844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C 0.091 3.909 4 O -0.571 6.571 5 C -0.106 4.106 6 C 0.037 3.963 7 N -0.509 5.509 8 C 0.105 3.895 9 C -0.176 4.176 10 C -0.067 4.067 11 C -0.193 4.193 12 C 0.156 3.844 13 O -0.180 6.180 14 C -0.390 4.390 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.235 4.235 23 C -0.051 4.051 24 C 0.044 3.956 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.377 0.623 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.269 0.731 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.253 17.928 -2.613 22.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.072 4.072 3 C 0.013 3.987 4 O -0.376 6.376 5 C -0.144 4.144 6 C -0.090 4.090 7 N -0.233 5.233 8 C -0.022 4.022 9 C -0.178 4.178 10 C -0.086 4.086 11 C -0.213 4.213 12 C 0.102 3.898 13 O -0.083 6.083 14 C -0.467 4.467 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.499 5.499 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.254 4.254 23 C -0.069 4.069 24 C -0.084 4.084 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.223 0.777 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.124 0.876 38 H 0.133 0.867 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.124 0.876 42 H 0.094 0.906 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.862 17.093 -2.244 21.509 hybrid contribution 0.325 0.287 -0.729 0.848 sum -12.536 17.380 -2.973 21.635 Atomic orbital electron populations 1.21804 0.93669 1.01504 1.02080 1.21415 0.96095 0.93641 0.96065 1.22234 0.97160 0.91756 0.87517 1.86469 1.75348 1.28732 1.47043 1.22518 1.01099 0.94599 0.96187 1.23258 0.98535 0.96478 0.90774 1.64858 1.50210 1.05892 1.02362 1.20959 0.95989 0.89082 0.96182 1.19029 0.95816 0.99404 1.03503 1.20461 0.97618 0.94244 0.96270 1.20162 0.92180 1.03067 1.05873 1.19389 0.89429 0.89140 0.91863 1.83978 1.23361 1.47704 1.53253 1.21377 0.91115 1.13677 1.20486 0.89027 1.25286 0.99420 0.94793 0.97077 1.70047 1.35244 1.13926 1.30683 0.85650 0.80242 0.78610 0.78948 1.19094 1.20168 1.20171 1.21155 1.01068 0.99175 1.04022 1.20546 0.92298 0.96368 0.97728 1.22899 0.95903 0.93827 0.95781 0.92864 0.91635 0.92941 0.93067 0.93921 0.77690 0.90764 0.91060 0.94038 0.89545 0.90996 0.94735 0.87625 0.86680 0.92111 0.85647 0.87614 0.90563 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 8.08 37.16 0.30 -0.90 16 2 C -0.07 -0.70 0.77 -153.15 -0.12 -0.82 16 3 C 0.09 0.78 5.61 37.16 0.21 0.99 16 4 O -0.57 -4.91 12.71 -35.23 -0.45 -5.36 16 5 C -0.11 -1.18 5.96 -24.87 -0.15 -1.33 16 6 C 0.04 0.47 5.67 -1.90 -0.01 0.46 16 7 N -0.51 -6.72 5.23 -231.89 -1.21 -7.94 16 8 C 0.10 1.46 4.86 -4.97 -0.02 1.43 16 9 C -0.18 -3.05 5.16 -104.57 -0.54 -3.59 16 10 C -0.07 -1.21 8.82 -39.61 -0.35 -1.56 16 11 C -0.19 -4.14 9.99 -39.39 -0.39 -4.54 16 12 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 13 O -0.18 -5.19 9.76 0.03 0.00 -5.19 16 14 C -0.39 -11.03 9.49 30.89 0.29 -10.73 16 15 H 0.09 2.41 5.21 -52.49 -0.27 2.13 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 17 N -0.86 -25.57 13.67 55.48 0.76 -24.81 16 18 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 C -0.23 -5.19 9.17 -39.39 -0.36 -5.56 16 23 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 24 C 0.04 0.47 5.99 -2.75 -0.02 0.45 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.62 7.62 -51.93 -0.40 0.23 16 27 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.05 0.45 8.11 -51.93 -0.42 0.03 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.38 1.60 9.12 45.56 0.42 2.02 16 31 H 0.07 0.88 7.84 -51.93 -0.41 0.48 16 32 H 0.07 0.76 7.86 -51.93 -0.41 0.35 16 33 H 0.04 0.50 7.81 -51.93 -0.41 0.10 16 34 H 0.09 1.24 7.85 -51.93 -0.41 0.83 16 35 H 0.07 0.93 8.02 -51.93 -0.42 0.51 16 36 H 0.03 0.45 7.77 -51.93 -0.40 0.05 16 37 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.13 2.79 5.64 -52.48 -0.30 2.49 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.08 0.76 7.68 -51.93 -0.40 0.36 16 43 H 0.05 0.47 7.32 -51.92 -0.38 0.09 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -31.70 348.39 -8.45 -40.14 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.87 Total: 4.73 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -1.90 Total: -22.51 kcal Atomic # 7 Polarization: -32.29 SS G_CDS: -0.46 Total: -32.75 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.45 Total: -10.55 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.70 -8.45 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.949 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds