Wall clock time and date at job start Tue Mar 31 2020 07:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.27450 * 2 1 4 4 O 1.42902 * 109.47167 * 57.91006 * 3 2 1 5 5 C 1.54594 * 110.38939 * 122.14773 * 2 1 3 6 6 C 1.54936 * 102.92333 * 97.00108 * 5 2 1 7 7 N 1.48531 * 103.22725 * 37.41207 * 6 5 2 8 8 C 1.46900 * 111.00319 * 200.28032 * 7 6 5 9 9 C 1.50702 * 109.47036 * 287.39596 * 8 7 6 10 10 C 1.38311 * 119.92915 * 89.99553 * 9 8 7 11 11 C 1.38096 * 120.06782 * 180.02562 * 10 9 8 12 12 C 1.38883 * 119.93001 * 359.97438 * 11 10 9 13 13 O 1.35752 * 120.06733 * 179.72546 * 12 11 10 14 14 C 1.34835 * 116.99867 * 174.45565 * 13 12 11 15 15 H 1.08001 * 119.99908 * 5.03572 * 14 13 12 16 16 C 1.38654 * 119.99862 * 185.04415 * 14 13 12 17 17 N 1.31554 * 119.99970 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99933 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47141 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46901 * 120.00333 * 18 16 14 21 21 H 1.48500 * 109.47422 * 239.99965 * 18 16 14 22 22 C 1.38878 * 119.86281 * 0.02562 * 12 11 10 23 23 C 1.38100 * 119.93217 * 359.97321 * 22 12 11 24 24 C 1.47904 * 105.82200 * 320.79699 * 7 6 5 25 25 H 1.08993 * 109.47263 * 182.08337 * 1 2 3 26 26 H 1.08993 * 109.46945 * 302.09076 * 1 2 3 27 27 H 1.09010 * 109.47006 * 62.08907 * 1 2 3 28 28 H 1.09003 * 109.47291 * 177.90960 * 3 2 1 29 29 H 1.08995 * 109.47324 * 297.91046 * 3 2 1 30 30 H 0.96695 * 114.00202 * 179.97438 * 4 3 2 31 31 H 1.09003 * 110.72249 * 215.36002 * 5 2 1 32 32 H 1.08999 * 110.72512 * 338.46055 * 5 2 1 33 33 H 1.09000 * 110.66928 * 278.97686 * 6 5 2 34 34 H 1.08997 * 110.66920 * 155.84866 * 6 5 2 35 35 H 1.08992 * 109.47390 * 167.39686 * 8 7 6 36 36 H 1.08999 * 109.46842 * 47.39035 * 8 7 6 37 37 H 1.08001 * 119.96634 * 0.02562 * 10 9 8 38 38 H 1.07991 * 120.03444 * 180.02562 * 11 10 9 39 39 H 0.97002 * 120.00599 * 179.97438 * 17 16 14 40 40 H 1.08007 * 120.03391 * 179.97438 * 22 12 11 41 41 H 1.08001 * 119.96661 * 180.02562 * 23 22 12 42 42 H 1.08995 * 109.92336 * 144.68645 * 24 7 6 43 43 H 1.09009 * 109.91272 * 265.77916 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0602 1.4352 0.0000 4 8 1.5539 2.1300 1.1414 5 6 2.0687 -0.7711 1.2269 6 6 2.3619 -2.1788 0.6501 7 7 2.8829 -1.8871 -0.7100 8 6 2.7697 -3.0646 -1.5810 9 6 3.7939 -4.0918 -1.1725 10 6 3.4729 -5.0479 -0.2260 11 6 4.4094 -5.9903 0.1507 12 6 5.6744 -5.9776 -0.4222 13 8 6.5990 -6.8992 -0.0498 14 6 7.7658 -6.9034 -0.7256 15 1 7.9631 -6.1433 -1.4670 16 6 8.7122 -7.8836 -0.4687 17 7 8.4719 -8.8092 0.4347 18 14 10.3283 -7.8898 -1.4054 19 1 10.3527 -6.7509 -2.3579 20 1 11.4558 -7.7580 -0.4479 21 1 10.4615 -9.1651 -2.1543 22 6 5.9937 -5.0163 -1.3723 23 6 5.0528 -4.0766 -1.7449 24 6 2.0646 -0.7672 -1.2236 25 1 -0.3633 -1.0269 0.0374 26 1 -0.3633 0.5459 0.8706 27 1 -0.3633 0.4811 -0.9082 28 1 3.1495 1.4202 0.0375 29 1 1.7349 1.9427 -0.9081 30 1 1.8502 3.0482 1.2064 31 1 2.9824 -0.3098 1.6017 32 1 1.3142 -0.8223 2.0119 33 1 1.4476 -2.7694 0.5933 34 1 3.1151 -2.6907 1.2489 35 1 2.9438 -2.7693 -2.6156 36 1 1.7707 -3.4906 -1.4879 37 1 2.4888 -5.0575 0.2188 38 1 4.1580 -6.7368 0.8895 39 1 9.1338 -9.4952 0.6142 40 1 6.9768 -5.0036 -1.8193 41 1 5.3003 -3.3290 -2.4840 42 1 2.6798 -0.1078 -1.8356 43 1 1.2344 -1.1545 -1.8145 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137115476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:53 Heat of formation + Delta-G solvation = -74.860909 kcal Electronic energy + Delta-G solvation = -22869.102278 eV Core-core repulsion = 19492.700105 eV Total energy + Delta-G solvation = -3376.402173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.99952 -40.40644 -38.46352 -37.29201 -34.67226 -34.09690 -31.84338 -31.29656 -30.35421 -27.84124 -27.47515 -26.35462 -24.82852 -23.61570 -22.58758 -21.58684 -19.97972 -19.83116 -18.82368 -18.17962 -16.89885 -16.66066 -16.41204 -16.25100 -15.85039 -15.61162 -15.44719 -15.24105 -14.97629 -14.76621 -14.34302 -13.97884 -13.79501 -13.60197 -13.52395 -13.16096 -13.13031 -12.91505 -12.76520 -12.53337 -12.32709 -12.11667 -12.05890 -11.97442 -11.73158 -11.56810 -11.34529 -11.15335 -10.80889 -10.77954 -9.75713 -9.32030 -8.87861 -8.46976 -6.14972 0.61708 0.69716 1.35017 1.43331 1.53577 2.18034 2.76579 3.07143 3.27289 3.36328 3.52823 3.67345 3.73405 4.04238 4.06586 4.16992 4.21908 4.32866 4.36528 4.41810 4.48811 4.60656 4.62940 4.64564 4.72628 4.78923 4.81448 4.88456 4.91680 5.02246 5.09711 5.13321 5.17763 5.22357 5.28791 5.31702 5.42637 5.58191 5.72916 5.81079 6.02926 6.04466 6.12856 6.26320 6.95289 6.98007 7.79488 8.76750 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032450 B = 0.002814 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.659944 B = 9949.143808 C =10129.823844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 C 0.093 3.907 4 O -0.587 6.587 5 C -0.103 4.103 6 C 0.036 3.964 7 N -0.525 5.525 8 C 0.107 3.893 9 C -0.151 4.151 10 C -0.059 4.059 11 C -0.205 4.205 12 C 0.114 3.886 13 O -0.234 6.234 14 C -0.412 4.412 15 H 0.101 0.899 16 C -0.024 4.024 17 N -0.922 5.922 18 Si 1.019 2.981 19 H -0.251 1.251 20 H -0.268 1.268 21 H -0.268 1.268 22 C -0.243 4.243 23 C -0.051 4.051 24 C 0.047 3.953 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.395 0.605 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.140 0.860 38 H 0.111 0.889 39 H 0.272 0.728 40 H 0.117 0.883 41 H 0.137 0.863 42 H 0.085 0.915 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.891 20.738 -4.518 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.071 4.071 3 C 0.015 3.985 4 O -0.395 6.395 5 C -0.141 4.141 6 C -0.091 4.091 7 N -0.250 5.250 8 C -0.020 4.020 9 C -0.152 4.152 10 C -0.077 4.077 11 C -0.224 4.224 12 C 0.063 3.937 13 O -0.141 6.141 14 C -0.488 4.488 15 H 0.118 0.882 16 C -0.221 4.221 17 N -0.561 5.561 18 Si 0.839 3.161 19 H -0.175 1.175 20 H -0.193 1.193 21 H -0.193 1.193 22 C -0.263 4.263 23 C -0.069 4.069 24 C -0.081 4.081 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.244 0.756 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.158 0.842 38 H 0.129 0.871 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.104 0.896 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.545 19.967 -4.160 25.051 hybrid contribution 0.523 -0.334 -0.127 0.633 sum -14.023 19.633 -4.287 24.504 Atomic orbital electron populations 1.21753 0.92883 1.01508 1.02402 1.21423 0.96649 0.94206 0.94867 1.22189 0.96756 0.91278 0.88267 1.86421 1.75606 1.30325 1.47183 1.22460 1.00721 0.93958 0.96984 1.23219 0.98098 0.97271 0.90540 1.64760 1.51624 1.06164 1.02409 1.20977 0.95309 0.88510 0.97203 1.19561 0.95894 0.98851 1.00860 1.20824 0.98169 0.92924 0.95810 1.20412 0.91998 1.04105 1.05926 1.19923 0.90118 0.89767 0.93848 1.83940 1.24518 1.50247 1.55390 1.21860 0.91633 1.14373 1.20955 0.88173 1.26599 1.03453 0.94034 0.98047 1.70191 1.37134 1.15430 1.33326 0.84521 0.74699 0.79263 0.77666 1.17454 1.19343 1.19274 1.21249 1.01670 0.99622 1.03716 1.20893 0.92100 0.95865 0.98080 1.22938 0.96133 0.92923 0.96094 0.92922 0.92346 0.91682 0.93654 0.92155 0.75597 0.92002 0.90802 0.93086 0.91887 0.89105 0.93009 0.84248 0.87115 0.91856 0.86531 0.84529 0.89636 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.08 71.98 0.58 -1.31 16 2 C -0.07 -1.17 0.77 -51.30 -0.04 -1.21 16 3 C 0.09 1.32 5.61 71.98 0.40 1.73 16 4 O -0.59 -8.66 12.71 -148.98 -1.89 -10.55 16 5 C -0.10 -2.09 5.96 31.80 0.19 -1.90 16 6 C 0.04 0.83 5.67 86.65 0.49 1.32 16 7 N -0.53 -12.01 5.23 -887.58 -4.65 -16.65 16 8 C 0.11 2.50 4.86 85.56 0.42 2.92 16 9 C -0.15 -4.78 5.16 -19.83 -0.10 -4.88 16 10 C -0.06 -2.01 8.82 22.25 0.20 -1.82 16 11 C -0.21 -8.97 9.99 22.39 0.22 -8.75 16 12 C 0.11 5.81 6.65 22.58 0.15 5.96 16 13 O -0.23 -14.44 9.76 -22.81 -0.22 -14.66 16 14 C -0.41 -24.49 9.49 67.92 0.64 -23.85 16 15 H 0.10 5.49 5.21 -2.91 -0.02 5.48 16 16 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 17 N -0.92 -57.53 13.67 21.61 0.30 -57.24 16 18 Si 1.02 43.54 29.55 68.60 2.03 45.57 16 19 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 22 C -0.24 -10.90 9.17 22.39 0.21 -10.70 16 23 C -0.05 -1.81 9.69 22.25 0.22 -1.59 16 24 C 0.05 0.79 5.99 86.45 0.52 1.31 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.96 7.62 -2.39 -0.02 0.94 16 27 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.05 0.69 8.11 -2.39 -0.02 0.67 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.39 2.41 9.12 -74.06 -0.68 1.73 16 31 H 0.06 1.40 7.84 -2.39 -0.02 1.38 16 32 H 0.07 1.44 7.86 -2.39 -0.02 1.43 16 33 H 0.05 1.07 7.81 -2.39 -0.02 1.05 16 34 H 0.06 1.73 7.85 -2.39 -0.02 1.71 16 35 H 0.09 1.86 8.02 -2.39 -0.02 1.84 16 36 H 0.05 1.08 7.77 -2.39 -0.02 1.06 16 37 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 38 H 0.11 4.81 8.06 -2.92 -0.02 4.79 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 41 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 42 H 0.09 1.33 7.68 -2.39 -0.02 1.32 16 43 H 0.06 0.91 7.32 -2.38 -0.02 0.89 16 Total: -1.00 -73.10 348.39 0.45 -72.65 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.33 Total: 24.57 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 4.56 Total: -43.69 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -4.35 Total: -73.89 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -2.12 Total: -25.21 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -73.10 0.45 -72.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.207 kcal (2) G-P(sol) polarization free energy of solvation -73.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds