Wall clock time and date at job start Tue Mar 31 2020 07:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38657 * 120.05474 * 2 1 4 4 O 1.35896 * 120.02788 * 0.25888 * 3 2 1 5 5 C 1.38749 * 119.94583 * 180.27185 * 3 2 1 6 6 C 1.38202 * 120.05425 * 0.02562 * 5 3 2 7 7 C 1.38156 * 120.10911 * 359.97438 * 6 5 3 8 8 C 1.50694 * 119.97278 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47285 * 96.68623 * 8 7 6 10 10 C 1.46840 * 110.99819 * 69.04230 * 9 8 7 11 11 C 1.53035 * 109.52391 * 174.16208 * 10 9 8 12 12 C 1.53120 * 109.27900 * 59.17553 * 11 10 9 13 13 C 1.53115 * 109.16339 * 302.34890 * 12 11 10 14 14 H 1.09005 * 109.50156 * 297.71155 * 13 12 11 15 15 C 1.50698 * 109.50385 * 177.63314 * 13 12 11 16 16 H 1.07993 * 120.00358 * 270.41112 * 15 13 12 17 17 C 1.37878 * 120.00037 * 90.41625 * 15 13 12 18 18 N 1.31516 * 120.00244 * 186.72337 * 17 15 13 19 19 Si 1.86802 * 119.99989 * 6.72317 * 17 15 13 20 20 H 1.48504 * 109.46800 * 91.80365 * 19 17 15 21 21 H 1.48495 * 109.47169 * 211.80198 * 19 17 15 22 22 H 1.48503 * 109.47220 * 331.80516 * 19 17 15 23 23 C 1.46854 * 110.99928 * 304.83060 * 9 8 7 24 24 C 1.38610 * 120.05628 * 180.28028 * 2 1 3 25 25 O 1.35908 * 120.02529 * 359.74272 * 24 2 1 26 26 H 1.08998 * 109.47331 * 269.72147 * 1 2 3 27 27 H 1.08996 * 109.47129 * 29.72062 * 1 2 3 28 28 H 1.08997 * 109.46839 * 149.72166 * 1 2 3 29 29 H 0.96702 * 114.00353 * 89.99408 * 4 3 2 30 30 H 1.07998 * 119.97624 * 179.97438 * 5 3 2 31 31 H 1.07999 * 119.94591 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.47440 * 216.69013 * 8 7 6 33 33 H 1.09001 * 109.47117 * 336.68895 * 8 7 6 34 34 H 1.08999 * 109.46463 * 294.17312 * 10 9 8 35 35 H 1.09001 * 109.46593 * 54.14618 * 10 9 8 36 36 H 1.09003 * 109.50737 * 179.12288 * 11 10 9 37 37 H 1.09000 * 109.50596 * 299.24035 * 11 10 9 38 38 H 1.08999 * 109.52079 * 62.25433 * 12 11 10 39 39 H 1.09007 * 109.52542 * 182.37633 * 12 11 10 40 40 H 0.96996 * 119.99860 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.46132 * 305.85245 * 23 9 8 42 42 H 1.08995 * 109.45617 * 65.82438 * 23 9 8 43 43 H 0.96700 * 113.99653 * 85.32621 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2001 0.0000 4 8 1.5237 2.3780 0.0053 5 6 3.5889 1.1975 -0.0057 6 6 4.2788 0.0000 -0.0119 7 6 3.5891 -1.1971 -0.0119 8 6 4.3444 -2.5011 -0.0193 9 7 4.4571 -3.0096 1.3543 10 6 3.1491 -3.4386 1.8655 11 6 3.3259 -4.0941 3.2370 12 6 3.9662 -3.0894 4.1988 13 6 5.3044 -2.6219 3.6198 14 1 5.9796 -3.4730 3.5309 15 6 5.9140 -1.5890 4.5322 16 1 5.6867 -0.5427 4.3915 17 6 6.7622 -1.9799 5.5465 18 7 7.1893 -1.0975 6.4232 19 14 7.3047 -3.7627 5.6755 20 1 8.5753 -3.9487 4.9297 21 1 7.5126 -4.1148 7.1031 22 1 6.2574 -4.6420 5.0963 23 6 5.0702 -2.0090 2.2372 24 6 2.2012 -1.1997 -0.0059 25 8 1.5234 -2.3777 -0.0063 26 1 -0.3634 -0.0050 1.0276 27 1 -0.3633 0.8924 -0.5095 28 1 -0.3633 -0.8875 -0.5181 29 1 1.3309 2.7169 0.8902 30 1 4.1303 2.1320 -0.0061 31 1 5.3587 0.0000 -0.0159 32 1 3.8105 -3.2268 -0.6327 33 1 5.3412 -2.3413 -0.4304 34 1 2.4938 -2.5726 1.9588 35 1 2.7065 -4.1560 1.1744 36 1 2.3531 -4.3985 3.6231 37 1 3.9701 -4.9683 3.1421 38 1 3.3043 -2.2325 4.3241 39 1 4.1328 -3.5654 5.1652 40 1 7.7857 -1.3726 7.1370 41 1 6.0229 -1.6881 1.8161 42 1 4.4058 -1.1497 2.3287 43 1 1.2614 -2.6803 -0.8866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140746242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:21 Heat of formation + Delta-G solvation = -67.935495 kcal Electronic energy + Delta-G solvation = -24424.471818 eV Core-core repulsion = 21048.369953 eV Total energy + Delta-G solvation = -3376.101865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59163 -38.50458 -37.57208 -35.83828 -33.89143 -32.50323 -31.79849 -30.17195 -29.38234 -26.92077 -25.75364 -24.89837 -22.67506 -21.86860 -21.32723 -20.44561 -18.99282 -18.58790 -17.42399 -16.81663 -16.47624 -15.69314 -15.23506 -15.03614 -14.50058 -14.22314 -13.89818 -13.59024 -13.38015 -13.19487 -13.02544 -12.96601 -12.57491 -12.46866 -12.35502 -11.99113 -11.76768 -11.43212 -11.22367 -10.99411 -10.94743 -10.67660 -10.60564 -10.43793 -10.06481 -9.77160 -9.46705 -9.22233 -8.88482 -8.58638 -8.48990 -8.37853 -7.72667 -6.03765 -4.01929 1.13652 1.22582 3.34060 3.42497 3.44626 3.48303 3.93145 4.39583 4.48311 4.58657 4.72173 4.86492 4.96623 5.27588 5.30937 5.45530 5.51960 5.58866 5.64174 5.69377 5.74480 5.78819 5.99562 6.03848 6.07586 6.23690 6.25579 6.31078 6.37052 6.45029 6.48748 6.57285 6.63434 6.67973 6.77907 6.93056 7.00801 7.38809 7.50371 7.54480 7.62475 7.66688 7.70802 7.94064 8.58180 9.01396 9.60892 11.09531 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.005033 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.086444 B = 5561.783644 C = 6163.106466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.143 4.143 3 C 0.111 3.889 4 O -0.498 6.498 5 C -0.147 4.147 6 C -0.079 4.079 7 C -0.139 4.139 8 C 0.099 3.901 9 N -0.530 5.530 10 C 0.069 3.931 11 C -0.123 4.123 12 C -0.111 4.111 13 C 0.019 3.981 14 H 0.038 0.962 15 C -0.510 4.510 16 H 0.069 0.931 17 C 0.072 3.928 18 N -0.903 5.903 19 Si 0.875 3.125 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.259 1.259 23 C 0.073 3.927 24 C 0.126 3.874 25 O -0.483 6.483 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.390 0.610 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.262 0.738 41 H 0.063 0.937 42 H 0.027 0.973 43 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.680 0.192 -15.343 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.144 4.144 3 C 0.066 3.934 4 O -0.308 6.308 5 C -0.165 4.165 6 C -0.097 4.097 7 C -0.142 4.142 8 C -0.029 4.029 9 N -0.252 5.252 10 C -0.058 4.058 11 C -0.160 4.160 12 C -0.149 4.149 13 C 0.000 4.000 14 H 0.057 0.943 15 C -0.548 4.548 16 H 0.087 0.913 17 C -0.129 4.129 18 N -0.541 5.541 19 Si 0.702 3.298 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.183 1.183 23 C -0.054 4.054 24 C 0.081 3.919 25 O -0.293 6.293 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.246 0.754 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -11.142 -0.251 -15.172 18.825 hybrid contribution -0.265 0.017 0.347 0.437 sum -11.407 -0.234 -14.825 18.707 Atomic orbital electron populations 1.20503 0.90418 1.02556 1.02397 1.20456 0.97128 0.92272 1.04568 1.18057 0.89628 0.84491 1.01207 1.84751 1.76600 1.35887 1.33571 1.21421 0.93319 0.99062 1.02723 1.20892 1.00241 0.90860 0.97755 1.21067 0.93462 0.97941 1.01682 1.21140 0.98802 0.90374 0.92572 1.62471 1.22705 1.39045 1.01003 1.22004 0.89358 0.98746 0.95733 1.21719 0.99561 0.99398 0.95363 1.21858 0.98778 0.96827 0.97458 1.19179 0.93279 0.96484 0.91062 0.94349 1.20958 1.26939 0.94205 1.12718 0.91284 1.25025 0.95726 0.97141 0.95050 1.69926 1.34372 1.34409 1.15367 0.86869 0.79613 0.86388 0.76888 1.20382 1.21758 1.18327 1.22223 0.97251 0.92036 0.93919 1.17829 0.89143 0.84488 1.00456 1.85025 1.75377 1.35947 1.32953 0.91327 0.91246 0.91644 0.75437 0.85263 0.85014 0.90614 0.90263 0.94306 0.91890 0.93175 0.92318 0.93483 0.93252 0.92791 0.91867 0.95482 0.76454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 9.57 36.01 0.34 -0.72 16 2 C -0.14 -1.83 5.91 -104.33 -0.62 -2.45 16 3 C 0.11 1.44 6.67 -39.24 -0.26 1.18 16 4 O -0.50 -5.60 12.54 -19.41 -0.24 -5.84 16 5 C -0.15 -1.94 9.98 -39.41 -0.39 -2.33 16 6 C -0.08 -1.09 8.54 -39.62 -0.34 -1.42 16 7 C -0.14 -1.94 3.95 -104.45 -0.41 -2.36 16 8 C 0.10 1.40 5.41 -4.98 -0.03 1.38 16 9 N -0.53 -9.37 4.86 -236.12 -1.15 -10.52 16 10 C 0.07 1.18 3.93 -3.84 -0.02 1.17 16 11 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 12 C -0.11 -2.46 5.23 -26.61 -0.14 -2.60 16 13 C 0.02 0.46 1.82 -91.70 -0.17 0.29 16 14 H 0.04 0.96 5.35 -51.93 -0.28 0.68 16 15 C -0.51 -14.35 8.86 -34.44 -0.31 -14.65 16 16 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 19 Si 0.88 21.88 26.84 -169.99 -4.56 17.32 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.26 -6.24 6.46 56.52 0.37 -5.88 16 23 C 0.07 1.50 3.86 -3.83 -0.01 1.49 16 24 C 0.13 1.66 5.52 -39.24 -0.22 1.45 16 25 O -0.48 -5.51 8.95 -19.45 -0.17 -5.69 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.68 7.53 -51.93 -0.39 0.29 16 28 H 0.06 0.59 7.53 -51.93 -0.39 0.20 16 29 H 0.39 2.86 9.06 45.56 0.41 3.27 16 30 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.13 1.70 8.05 -52.49 -0.42 1.28 16 32 H 0.08 0.94 7.61 -51.93 -0.39 0.54 16 33 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16 34 H 0.04 0.71 5.77 -51.93 -0.30 0.41 16 35 H 0.06 0.97 7.55 -51.93 -0.39 0.58 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 1.13 7.71 -51.93 -0.40 0.73 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.06 1.31 8.12 -51.93 -0.42 0.89 16 42 H 0.03 0.59 6.73 -51.93 -0.35 0.24 16 43 H 0.38 2.58 9.06 45.56 0.41 3.00 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -32.90 333.74 -8.19 -41.08 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.04 Total: 5.58 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -2.82 Total: -20.02 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.37 Total: -37.46 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.42 Total: -11.53 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.56 Total: 17.32 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.90 -8.19 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140746242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.854 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds