Wall clock time and date at job start Tue Mar 31 2020 07:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38657 * 120.05474 * 2 1 4 4 O 1.35896 * 120.02788 * 0.25888 * 3 2 1 5 5 C 1.38749 * 119.94583 * 180.27185 * 3 2 1 6 6 C 1.38202 * 120.05425 * 0.02562 * 5 3 2 7 7 C 1.38156 * 120.10911 * 359.97438 * 6 5 3 8 8 C 1.50694 * 119.97278 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47285 * 96.68623 * 8 7 6 10 10 C 1.46840 * 110.99819 * 69.04230 * 9 8 7 11 11 C 1.53035 * 109.52391 * 174.16208 * 10 9 8 12 12 C 1.53120 * 109.27900 * 59.17553 * 11 10 9 13 13 C 1.53115 * 109.16339 * 302.34890 * 12 11 10 14 14 H 1.09005 * 109.50156 * 297.71155 * 13 12 11 15 15 C 1.50698 * 109.50385 * 177.63314 * 13 12 11 16 16 H 1.07993 * 120.00358 * 270.41112 * 15 13 12 17 17 C 1.37878 * 120.00037 * 90.41625 * 15 13 12 18 18 N 1.31516 * 120.00244 * 186.72337 * 17 15 13 19 19 Si 1.86802 * 119.99989 * 6.72317 * 17 15 13 20 20 H 1.48504 * 109.46800 * 91.80365 * 19 17 15 21 21 H 1.48495 * 109.47169 * 211.80198 * 19 17 15 22 22 H 1.48503 * 109.47220 * 331.80516 * 19 17 15 23 23 C 1.46854 * 110.99928 * 304.83060 * 9 8 7 24 24 C 1.38610 * 120.05628 * 180.28028 * 2 1 3 25 25 O 1.35908 * 120.02529 * 359.74272 * 24 2 1 26 26 H 1.08998 * 109.47331 * 269.72147 * 1 2 3 27 27 H 1.08996 * 109.47129 * 29.72062 * 1 2 3 28 28 H 1.08997 * 109.46839 * 149.72166 * 1 2 3 29 29 H 0.96702 * 114.00353 * 89.99408 * 4 3 2 30 30 H 1.07998 * 119.97624 * 179.97438 * 5 3 2 31 31 H 1.07999 * 119.94591 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.47440 * 216.69013 * 8 7 6 33 33 H 1.09001 * 109.47117 * 336.68895 * 8 7 6 34 34 H 1.08999 * 109.46463 * 294.17312 * 10 9 8 35 35 H 1.09001 * 109.46593 * 54.14618 * 10 9 8 36 36 H 1.09003 * 109.50737 * 179.12288 * 11 10 9 37 37 H 1.09000 * 109.50596 * 299.24035 * 11 10 9 38 38 H 1.08999 * 109.52079 * 62.25433 * 12 11 10 39 39 H 1.09007 * 109.52542 * 182.37633 * 12 11 10 40 40 H 0.96996 * 119.99860 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.46132 * 305.85245 * 23 9 8 42 42 H 1.08995 * 109.45617 * 65.82438 * 23 9 8 43 43 H 0.96700 * 113.99653 * 85.32621 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2001 0.0000 4 8 1.5237 2.3780 0.0053 5 6 3.5889 1.1975 -0.0057 6 6 4.2788 0.0000 -0.0119 7 6 3.5891 -1.1971 -0.0119 8 6 4.3444 -2.5011 -0.0193 9 7 4.4571 -3.0096 1.3543 10 6 3.1491 -3.4386 1.8655 11 6 3.3259 -4.0941 3.2370 12 6 3.9662 -3.0894 4.1988 13 6 5.3044 -2.6219 3.6198 14 1 5.9796 -3.4730 3.5309 15 6 5.9140 -1.5890 4.5322 16 1 5.6867 -0.5427 4.3915 17 6 6.7622 -1.9799 5.5465 18 7 7.1893 -1.0975 6.4232 19 14 7.3047 -3.7627 5.6755 20 1 8.5753 -3.9487 4.9297 21 1 7.5126 -4.1148 7.1031 22 1 6.2574 -4.6420 5.0963 23 6 5.0702 -2.0090 2.2372 24 6 2.2012 -1.1997 -0.0059 25 8 1.5234 -2.3777 -0.0063 26 1 -0.3634 -0.0050 1.0276 27 1 -0.3633 0.8924 -0.5095 28 1 -0.3633 -0.8875 -0.5181 29 1 1.3309 2.7169 0.8902 30 1 4.1303 2.1320 -0.0061 31 1 5.3587 0.0000 -0.0159 32 1 3.8105 -3.2268 -0.6327 33 1 5.3412 -2.3413 -0.4304 34 1 2.4938 -2.5726 1.9588 35 1 2.7065 -4.1560 1.1744 36 1 2.3531 -4.3985 3.6231 37 1 3.9701 -4.9683 3.1421 38 1 3.3043 -2.2325 4.3241 39 1 4.1328 -3.5654 5.1652 40 1 7.7857 -1.3726 7.1370 41 1 6.0229 -1.6881 1.8161 42 1 4.4058 -1.1497 2.3287 43 1 1.2614 -2.6803 -0.8866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140746242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:21 Heat of formation + Delta-G solvation = -93.091301 kcal Electronic energy + Delta-G solvation = -24425.562656 eV Core-core repulsion = 21048.369953 eV Total energy + Delta-G solvation = -3377.192702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61351 -39.77787 -38.64172 -36.85140 -35.48937 -34.15984 -32.99791 -31.93017 -30.53312 -27.84496 -27.15058 -26.69560 -23.96758 -23.08321 -22.76967 -21.72357 -20.32882 -19.80758 -18.94659 -18.33882 -17.46672 -17.04502 -16.49058 -16.06391 -15.92740 -15.68079 -15.37550 -15.00299 -14.68326 -14.53101 -14.34383 -14.28165 -13.98949 -13.70035 -13.58014 -13.27502 -12.93614 -12.82651 -12.74548 -12.56441 -12.41039 -12.08503 -11.80030 -11.72736 -11.57585 -11.49792 -11.27925 -11.00797 -10.79146 -10.61109 -9.55730 -9.48809 -9.10391 -8.28303 -6.30895 0.14518 0.24567 1.36089 1.37713 1.50759 2.37389 2.46672 3.05103 3.06889 3.22571 3.53340 3.78721 3.87390 3.97086 4.20382 4.22692 4.28989 4.35432 4.50694 4.60807 4.65665 4.72816 4.76117 4.78282 4.79025 4.91600 4.96116 5.02898 5.05083 5.15865 5.20759 5.26803 5.28400 5.30838 5.39554 5.50080 5.58144 5.67353 5.74943 5.77231 6.19915 6.33116 6.41502 6.73944 6.76705 6.86851 7.35155 8.88746 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.005033 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.086444 B = 5561.783644 C = 6163.106466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.156 4.156 3 C 0.108 3.892 4 O -0.502 6.502 5 C -0.163 4.163 6 C -0.091 4.091 7 C -0.155 4.155 8 C 0.101 3.899 9 N -0.534 5.534 10 C 0.076 3.924 11 C -0.117 4.117 12 C -0.109 4.109 13 C 0.017 3.983 14 H 0.035 0.965 15 C -0.513 4.513 16 H 0.026 0.974 17 C 0.014 3.986 18 N -0.951 5.951 19 Si 0.940 3.060 20 H -0.269 1.269 21 H -0.288 1.288 22 H -0.242 1.242 23 C 0.090 3.910 24 C 0.132 3.868 25 O -0.488 6.488 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.407 0.593 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.028 0.972 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.032 0.968 39 H 0.036 0.964 40 H 0.265 0.735 41 H 0.056 0.944 42 H 0.010 0.990 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.136 -2.045 -17.015 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.157 4.157 3 C 0.063 3.937 4 O -0.314 6.314 5 C -0.182 4.182 6 C -0.110 4.110 7 C -0.157 4.157 8 C -0.026 4.026 9 N -0.256 5.256 10 C -0.052 4.052 11 C -0.155 4.155 12 C -0.147 4.147 13 C -0.002 4.002 14 H 0.053 0.947 15 C -0.551 4.551 16 H 0.044 0.956 17 C -0.182 4.182 18 N -0.591 5.591 19 Si 0.764 3.236 20 H -0.194 1.194 21 H -0.215 1.215 22 H -0.165 1.165 23 C -0.038 4.038 24 C 0.086 3.914 25 O -0.300 6.300 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.265 0.735 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.046 0.954 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.028 0.972 43 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -12.626 -2.491 -16.877 21.224 hybrid contribution 0.111 0.844 0.835 1.192 sum -12.515 -1.647 -16.042 20.413 Atomic orbital electron populations 1.20511 0.88727 1.03572 1.02547 1.20747 0.98468 0.92073 1.04402 1.18199 0.89654 0.85250 1.00608 1.84698 1.76290 1.35345 1.35113 1.21591 0.93891 0.99319 1.03389 1.21018 1.00443 0.91421 0.98147 1.21077 0.94034 0.97668 1.02962 1.21206 0.99745 0.91119 0.90562 1.62402 1.23206 1.38017 1.01984 1.21990 0.88843 0.98802 0.95525 1.21690 1.00442 0.98176 0.95193 1.21732 0.97711 0.97372 0.97910 1.19144 0.93860 0.95065 0.92141 0.94683 1.21220 1.26960 0.93386 1.13570 0.95590 1.25884 0.95885 1.01838 0.94626 1.70071 1.35691 1.36889 1.16455 0.85825 0.79736 0.80915 0.77084 1.19439 1.21475 1.16519 1.21816 0.96997 0.91973 0.92974 1.17849 0.88895 0.85196 0.99453 1.84941 1.75034 1.35069 1.34980 0.91484 0.90823 0.90071 0.73486 0.84557 0.85113 0.88003 0.89745 0.95368 0.88994 0.90772 0.91990 0.94936 0.94542 0.92639 0.92579 0.97172 0.73803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.57 71.24 0.68 -1.12 16 2 C -0.16 -3.73 5.91 -19.68 -0.12 -3.85 16 3 C 0.11 2.72 6.67 22.49 0.15 2.87 16 4 O -0.50 -10.75 12.54 -92.38 -1.16 -11.91 16 5 C -0.16 -4.33 9.98 22.38 0.22 -4.11 16 6 C -0.09 -2.52 8.54 22.24 0.19 -2.33 16 7 C -0.15 -4.13 3.95 -19.75 -0.08 -4.20 16 8 C 0.10 2.61 5.41 85.55 0.46 3.08 16 9 N -0.53 -17.69 4.86 -900.96 -4.38 -22.07 16 10 C 0.08 2.35 3.93 86.33 0.34 2.69 16 11 C -0.12 -4.00 6.09 30.65 0.19 -3.81 16 12 C -0.11 -4.75 5.23 30.67 0.16 -4.59 16 13 C 0.02 0.82 1.82 -11.49 -0.02 0.80 16 14 H 0.04 1.70 5.35 -2.38 -0.01 1.69 16 15 C -0.51 -29.83 8.86 25.60 0.23 -29.61 16 16 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16 17 C 0.01 0.85 5.47 84.65 0.46 1.32 16 18 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 19 Si 0.94 45.23 26.84 68.60 1.84 47.08 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.24 -10.87 6.46 99.48 0.64 -10.23 16 23 C 0.09 3.72 3.86 86.32 0.33 4.06 16 24 C 0.13 3.19 5.52 22.49 0.12 3.32 16 25 O -0.49 -9.41 8.95 -92.51 -0.83 -10.24 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.29 7.53 -2.39 -0.02 1.27 16 28 H 0.08 1.23 7.53 -2.39 -0.02 1.21 16 29 H 0.41 5.56 9.06 -74.06 -0.67 4.89 16 30 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.13 3.48 8.05 -2.91 -0.02 3.46 16 32 H 0.10 2.11 7.61 -2.39 -0.02 2.09 16 33 H 0.08 2.09 8.04 -2.39 -0.02 2.07 16 34 H 0.03 0.96 5.77 -2.39 -0.01 0.94 16 35 H 0.09 2.38 7.55 -2.39 -0.02 2.36 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.04 1.64 7.71 -2.38 -0.02 1.62 16 40 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 41 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 42 H 0.01 0.45 6.73 -2.39 -0.02 0.43 16 43 H 0.40 3.80 9.06 -74.06 -0.67 3.13 16 Total: -1.00 -72.05 333.74 -1.27 -73.32 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -0.38 Total: 19.25 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 3.33 Total: -35.48 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -4.08 Total: -82.02 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -1.99 Total: -22.15 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.84 Total: 47.08 kcal Total: -72.05 -1.27 -73.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140746242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.769 kcal (2) G-P(sol) polarization free energy of solvation -72.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds