Wall clock time and date at job start Tue Mar 31 2020 07:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38648 * 120.05890 * 2 1 4 4 O 1.35904 * 120.02654 * 359.97438 * 3 2 1 5 5 C 1.38752 * 119.94720 * 179.97438 * 3 2 1 6 6 C 1.38198 * 120.05681 * 0.02562 * 5 3 2 7 7 C 1.38158 * 120.10490 * 359.97438 * 6 5 3 8 8 C 1.50703 * 119.96985 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47107 * 259.99967 * 8 7 6 10 10 C 1.46847 * 111.00044 * 66.04660 * 9 8 7 11 11 C 1.53038 * 109.52866 * 185.83761 * 10 9 8 12 12 C 1.53117 * 109.27421 * 300.82510 * 11 10 9 13 13 C 1.53115 * 109.16360 * 57.65205 * 12 11 10 14 14 H 1.09002 * 109.50586 * 62.32365 * 13 12 11 15 15 C 1.50699 * 109.50177 * 182.40199 * 13 12 11 16 16 H 1.08003 * 120.00004 * 120.00371 * 15 13 12 17 17 C 1.37878 * 120.00232 * 299.99831 * 15 13 12 18 18 N 1.31507 * 119.99874 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99997 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47065 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46936 * 120.00067 * 19 17 15 22 22 H 1.48491 * 109.47036 * 239.99739 * 19 17 15 23 23 C 1.46844 * 110.99944 * 190.25611 * 9 8 7 24 24 C 1.38622 * 120.05151 * 180.25447 * 2 1 3 25 25 O 1.35895 * 120.02926 * 359.97438 * 24 2 1 26 26 H 1.08991 * 109.47036 * 89.99829 * 1 2 3 27 27 H 1.09002 * 109.47252 * 210.00323 * 1 2 3 28 28 H 1.09000 * 109.46582 * 330.00082 * 1 2 3 29 29 H 0.96696 * 113.99926 * 270.02499 * 4 3 2 30 30 H 1.08001 * 119.97620 * 179.97438 * 5 3 2 31 31 H 1.08000 * 119.94599 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.47152 * 140.00054 * 8 7 6 33 33 H 1.09001 * 109.46980 * 20.00155 * 8 7 6 34 34 H 1.09001 * 109.46436 * 305.85995 * 10 9 8 35 35 H 1.09007 * 109.46424 * 65.82219 * 10 9 8 36 36 H 1.09005 * 109.49841 * 60.75956 * 11 10 9 37 37 H 1.08994 * 109.50372 * 180.87942 * 11 10 9 38 38 H 1.09003 * 109.52002 * 177.55557 * 12 11 10 39 39 H 1.08995 * 109.52510 * 297.67406 * 12 11 10 40 40 H 0.97003 * 120.00092 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.46477 * 294.17796 * 23 9 8 42 42 H 1.08993 * 109.46460 * 54.14969 * 23 9 8 43 43 H 0.96699 * 114.00356 * 270.25474 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.2000 0.0000 4 8 1.5237 2.3780 -0.0005 5 6 3.5890 1.1973 0.0005 6 6 4.2788 -0.0002 0.0005 7 6 3.5891 -1.1973 0.0005 8 6 4.3444 -2.5013 0.0000 9 7 4.3812 -3.0453 -1.3641 10 6 5.1710 -2.1837 -2.2531 11 6 5.0676 -2.6998 -3.6902 12 6 5.5873 -4.1388 -3.7491 13 6 4.7797 -5.0051 -2.7786 14 1 3.7340 -5.0177 -3.0859 15 6 5.3235 -6.4105 -2.7868 16 1 5.7075 -6.8463 -1.8763 17 6 5.3308 -7.1401 -3.9567 18 7 4.8637 -6.6093 -5.0656 19 14 6.0043 -8.8825 -3.9667 20 1 6.4650 -9.2429 -2.6018 21 1 4.9372 -9.8231 -4.3929 22 1 7.1453 -8.9667 -4.9132 23 6 4.8916 -4.4222 -1.3680 24 6 2.2012 -1.1999 -0.0053 25 8 1.5234 -2.3777 -0.0100 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3632 0.8900 0.5138 29 1 1.3276 2.7185 -0.8840 30 1 4.1304 2.1318 0.0001 31 1 5.3589 -0.0002 0.0005 32 1 3.8456 -3.2105 0.6606 33 1 5.3623 -2.3318 0.3511 34 1 4.7884 -1.1642 -2.2049 35 1 6.2143 -2.1952 -1.9374 36 1 4.0262 -2.6756 -4.0114 37 1 5.6664 -2.0692 -4.3472 38 1 5.4753 -4.5253 -4.7621 39 1 6.6398 -4.1578 -3.4665 40 1 4.8685 -7.1227 -5.8886 41 1 5.9362 -4.4232 -1.0564 42 1 4.3061 -5.0285 -0.6771 43 1 1.3241 -2.7204 0.8720 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140746243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:24 Heat of formation + Delta-G solvation = -91.977807 kcal Electronic energy + Delta-G solvation = -23735.113445 eV Core-core repulsion = 20357.969027 eV Total energy + Delta-G solvation = -3377.144418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.35355 -39.71317 -38.66529 -36.82211 -35.53966 -33.90264 -32.93943 -31.69071 -30.59348 -27.78773 -26.90247 -26.70270 -23.80814 -23.34752 -22.71799 -21.59218 -20.34258 -19.77502 -18.42434 -18.25077 -17.46955 -16.88367 -16.40323 -16.29490 -15.91118 -15.51341 -15.31096 -14.92307 -14.81513 -14.40958 -14.24800 -13.98195 -13.93960 -13.63527 -13.41524 -13.22014 -12.87006 -12.76977 -12.71433 -12.63231 -12.41010 -12.15371 -11.80497 -11.72225 -11.54294 -11.46231 -11.31861 -10.86506 -10.65138 -10.37395 -9.50925 -9.39604 -9.03408 -8.06716 -6.21216 0.19740 0.30532 1.40889 1.42324 1.53894 2.42341 2.50270 3.13073 3.20125 3.27125 3.60840 3.79475 3.88685 4.04780 4.20869 4.23526 4.37758 4.39879 4.52578 4.61060 4.63403 4.74699 4.76733 4.79539 4.83588 4.89202 4.95954 4.99810 5.10271 5.19344 5.27119 5.34250 5.38693 5.44084 5.51786 5.59369 5.64457 5.78949 5.98061 6.14371 6.23089 6.38912 6.48089 6.83843 6.92044 6.94646 7.46758 8.98155 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029178 B = 0.003611 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.394395 B = 7751.215362 C = 7998.294247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.156 4.156 3 C 0.113 3.887 4 O -0.501 6.501 5 C -0.153 4.153 6 C -0.090 4.090 7 C -0.117 4.117 8 C 0.103 3.897 9 N -0.537 5.537 10 C 0.070 3.930 11 C -0.110 4.110 12 C -0.102 4.102 13 C 0.054 3.946 14 H -0.008 1.008 15 C -0.534 4.534 16 H 0.053 0.947 17 C 0.013 3.987 18 N -0.917 5.917 19 Si 0.956 3.044 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.280 1.280 23 C 0.085 3.915 24 C 0.133 3.867 25 O -0.496 6.496 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.408 0.592 30 H 0.149 0.851 31 H 0.142 0.858 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.029 0.971 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.025 0.975 40 H 0.260 0.740 41 H 0.017 0.983 42 H 0.056 0.944 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.269 17.049 11.359 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.157 4.157 3 C 0.068 3.932 4 O -0.314 6.314 5 C -0.171 4.171 6 C -0.109 4.109 7 C -0.118 4.118 8 C -0.024 4.024 9 N -0.262 5.262 10 C -0.058 4.058 11 C -0.148 4.148 12 C -0.140 4.140 13 C 0.035 3.965 14 H 0.010 0.990 15 C -0.573 4.573 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.781 3.219 20 H -0.190 1.190 21 H -0.207 1.207 22 H -0.206 1.206 23 C -0.043 4.043 24 C 0.087 3.913 25 O -0.307 6.307 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.267 0.733 30 H 0.167 0.833 31 H 0.159 0.841 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.035 0.965 42 H 0.075 0.925 43 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -4.717 16.984 11.009 20.782 hybrid contribution 0.976 -1.247 -0.165 1.592 sum -3.742 15.737 10.844 19.474 Atomic orbital electron populations 1.20506 0.89303 1.03244 1.02538 1.20707 0.98227 0.92130 1.04663 1.18149 0.89928 0.84739 1.00346 1.84719 1.76391 1.35021 1.35284 1.21557 0.93286 0.99292 1.02974 1.21008 1.00648 0.90689 0.98565 1.20215 0.93282 0.95452 1.02859 1.20835 0.97931 0.93363 0.90250 1.61887 1.53901 1.02002 1.08393 1.21989 0.94681 0.96474 0.92667 1.21571 1.00178 0.96846 0.96178 1.21445 0.96958 0.93648 1.01988 1.18570 0.94241 0.92905 0.90814 0.99012 1.21556 1.40947 0.99711 0.95069 0.92910 1.25743 0.95606 1.01941 0.95309 1.70056 1.47285 1.38129 1.00147 0.85543 0.77991 0.80089 0.78238 1.19032 1.20726 1.20601 1.21951 0.95776 0.87835 0.98688 1.18075 0.89150 0.85067 0.99003 1.84909 1.76011 1.35635 1.34180 0.91392 0.91123 0.90427 0.73280 0.83282 0.84056 0.90146 0.93630 0.90268 0.95301 0.93902 0.91329 0.92517 0.95654 0.93132 0.96475 0.92523 0.74202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 9.57 71.24 0.68 -1.25 16 2 C -0.16 -3.64 5.91 -19.67 -0.12 -3.75 16 3 C 0.11 2.38 6.67 22.49 0.15 2.53 16 4 O -0.50 -8.49 12.55 -92.46 -1.16 -9.66 16 5 C -0.15 -3.01 9.98 22.38 0.22 -2.79 16 6 C -0.09 -1.97 8.56 22.24 0.19 -1.78 16 7 C -0.12 -3.05 4.60 -19.75 -0.09 -3.15 16 8 C 0.10 3.01 4.75 85.56 0.41 3.41 16 9 N -0.54 -19.96 4.65 -900.92 -4.19 -24.15 16 10 C 0.07 2.43 5.26 86.33 0.45 2.89 16 11 C -0.11 -4.45 6.09 30.65 0.19 -4.26 16 12 C -0.10 -5.06 5.02 30.67 0.15 -4.90 16 13 C 0.05 2.82 2.26 -11.49 -0.03 2.79 16 14 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 15 C -0.53 -30.23 8.56 25.60 0.22 -30.01 16 16 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 17 C 0.01 0.71 5.30 84.66 0.45 1.16 16 18 N -0.92 -54.42 11.35 21.45 0.24 -54.18 16 19 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 C 0.08 3.68 4.68 86.33 0.40 4.08 16 24 C 0.13 3.50 6.65 22.49 0.15 3.65 16 25 O -0.50 -13.36 11.78 -92.37 -1.09 -14.44 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.30 7.54 -2.39 -0.02 1.28 16 28 H 0.08 1.33 7.53 -2.39 -0.02 1.32 16 29 H 0.41 3.37 9.06 -74.06 -0.67 2.69 16 30 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.14 2.60 8.03 -2.91 -0.02 2.58 16 32 H 0.08 2.26 7.70 -2.39 -0.02 2.25 16 33 H 0.05 1.22 7.98 -2.39 -0.02 1.20 16 34 H 0.08 2.46 6.31 -2.39 -0.02 2.45 16 35 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.06 3.18 6.15 -2.39 -0.01 3.16 16 39 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.06 2.43 8.01 -2.39 -0.02 2.41 16 43 H 0.40 6.94 9.06 -74.06 -0.67 6.27 16 Total: -1.00 -69.28 343.54 -1.05 -70.32 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -0.32 Total: 17.13 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 3.44 Total: -31.38 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -3.94 Total: -78.32 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -2.25 Total: -24.10 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -69.28 -1.05 -70.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140746243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.653 kcal (2) G-P(sol) polarization free energy of solvation -69.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds