Wall clock time and date at job start Tue Mar 31 2020 06:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36359 * 119.91730 * 2 1 4 4 C 1.40874 * 119.83372 * 179.97438 * 3 2 1 5 5 C 1.41132 * 120.15260 * 180.02562 * 4 3 2 6 6 H 1.08006 * 120.00191 * 24.60037 * 5 4 3 7 7 C 1.39868 * 120.00078 * 204.60563 * 5 4 3 8 8 N 1.30903 * 119.99499 * 17.94417 * 7 5 4 9 9 Si 1.86799 * 120.00108 * 197.95311 * 7 5 4 10 10 H 1.48503 * 109.47498 * 89.99481 * 9 7 5 11 11 H 1.48500 * 109.46894 * 209.99420 * 9 7 5 12 12 H 1.48499 * 109.47114 * 329.99260 * 9 7 5 13 13 C 1.40900 * 119.68808 * 0.02562 * 4 3 2 14 14 C 1.36324 * 119.84060 * 359.71736 * 13 4 3 15 15 C 1.39544 * 119.91635 * 179.97438 * 2 1 3 16 16 N 1.38855 * 119.84515 * 0.02562 * 15 2 1 17 17 C 1.46500 * 119.99636 * 180.02562 * 16 15 2 18 18 C 1.52999 * 109.46866 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.54400 * 64.99659 * 18 17 16 20 20 C 1.53181 * 109.54542 * 304.82031 * 18 17 16 21 21 C 1.53099 * 109.16156 * 183.24178 * 20 18 17 22 22 O 1.42901 * 109.48653 * 57.47531 * 21 20 18 23 23 C 1.42905 * 114.09481 * 298.88877 * 22 21 20 24 24 C 1.53090 * 109.41702 * 61.15906 * 23 22 21 25 25 H 1.09001 * 109.46777 * 270.01789 * 1 2 3 26 26 H 1.08994 * 109.47245 * 30.01812 * 1 2 3 27 27 H 1.08997 * 109.47187 * 150.02418 * 1 2 3 28 28 H 1.07997 * 120.08215 * 359.96307 * 3 2 1 29 29 H 0.97006 * 119.99361 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.08038 * 180.02562 * 13 4 3 31 31 H 1.07998 * 119.92379 * 180.29354 * 14 13 4 32 32 H 0.96993 * 120.00052 * 359.97438 * 16 15 2 33 33 H 1.08995 * 109.47719 * 60.00070 * 17 16 15 34 34 H 1.09004 * 109.47479 * 299.99426 * 17 16 15 35 35 H 0.96696 * 113.99989 * 300.00205 * 19 18 17 36 36 H 1.09004 * 109.51894 * 303.06259 * 20 18 17 37 37 H 1.09003 * 109.51852 * 63.24200 * 20 18 17 38 38 H 1.09002 * 109.40296 * 297.49553 * 21 20 18 39 39 H 1.08995 * 109.49477 * 177.50814 * 21 20 18 40 40 H 1.09002 * 109.48622 * 301.17425 * 23 22 21 41 41 H 1.09008 * 109.48750 * 181.15002 * 23 22 21 42 42 H 1.08995 * 109.52482 * 182.48092 * 24 23 22 43 43 H 1.08997 * 109.57253 * 62.32880 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1819 0.0000 4 6 3.5959 1.1798 0.0005 5 6 4.3065 2.3992 0.0011 6 1 3.8436 3.2939 0.3905 7 6 5.6104 2.4489 -0.5027 8 7 6.0482 1.4917 -1.2809 9 14 6.7268 3.8811 -0.0650 10 1 7.4826 3.5596 1.1722 11 1 7.6795 4.1242 -1.1779 12 1 5.9060 5.0983 0.1586 13 6 4.2919 -0.0452 0.0005 14 6 3.5989 -1.2192 0.0058 15 6 2.2030 -1.2095 0.0005 16 7 1.5037 -2.4091 0.0005 17 6 2.2310 -3.6808 0.0017 18 6 1.2320 -4.8396 0.0021 19 8 0.4892 -4.8308 -1.2187 20 6 0.2726 -4.6887 1.1867 21 6 -0.6707 -5.8940 1.2260 22 8 0.0958 -7.0965 1.3176 23 6 0.9752 -7.3134 0.2123 24 6 1.9861 -6.1664 0.1335 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6471 2.1172 -0.0006 29 1 6.9527 1.5260 -1.6300 30 1 5.3719 -0.0542 0.0014 31 1 4.1311 -2.1589 0.0106 32 1 0.5338 -2.4051 0.0005 33 1 2.8567 -3.7409 0.8921 34 1 2.8581 -3.7417 -0.8879 35 1 -0.0159 -4.0195 -1.3659 36 1 0.8434 -4.6440 2.1142 37 1 -0.3081 -3.7735 1.0708 38 1 -1.2710 -5.9139 0.3164 39 1 -1.3268 -5.8142 2.0928 40 1 0.3965 -7.3519 -0.7107 41 1 1.5050 -8.2562 0.3486 42 1 2.6297 -6.3071 -0.7348 43 1 2.5934 -6.1521 1.0384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167551866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:01 Heat of formation + Delta-G solvation = -82.916169 kcal Electronic energy + Delta-G solvation = -23481.380915 eV Core-core repulsion = 20104.629440 eV Total energy + Delta-G solvation = -3376.751476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.18388 -38.25222 -36.88711 -34.72768 -33.24225 -32.06765 -31.33855 -31.28121 -29.02576 -26.93010 -25.83282 -24.35357 -23.68156 -22.81005 -20.47275 -20.03437 -19.92018 -17.16030 -16.79035 -16.71243 -16.17297 -15.56520 -15.39731 -14.97635 -14.91699 -14.54132 -14.10418 -13.54899 -13.26827 -13.09207 -12.83086 -12.71872 -12.52921 -12.41082 -12.06256 -11.84990 -11.73941 -11.51924 -11.48310 -11.13280 -11.04874 -10.85097 -10.71564 -10.53890 -10.42516 -10.17437 -9.68638 -9.50920 -9.32503 -9.25301 -8.57717 -7.38728 -6.65493 -6.41279 -4.06242 2.89499 3.02252 3.13930 3.17328 3.32088 3.70703 4.00609 4.03831 4.10775 4.55000 4.63470 4.67235 4.72320 4.85357 5.08188 5.28961 5.39934 5.43600 5.49333 5.60981 5.69395 5.75959 5.82634 5.85064 5.88887 5.99773 6.04496 6.08455 6.26467 6.27632 6.50515 6.82768 6.92022 7.02089 7.20376 7.35313 7.47811 7.51543 7.67435 7.80960 8.13089 8.24867 8.42788 8.61592 8.75773 9.03750 9.12212 10.35136 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030839 B = 0.003324 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.736520 B = 8422.783007 C = 8974.069303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.132 4.132 3 C -0.185 4.185 4 C 0.078 3.922 5 C -0.467 4.467 6 H 0.073 0.927 7 C 0.075 3.925 8 N -0.806 5.806 9 Si 0.903 3.097 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.264 1.264 13 C -0.126 4.126 14 C -0.160 4.160 15 C 0.094 3.906 16 N -0.760 5.760 17 C 0.116 3.884 18 C 0.124 3.876 19 O -0.556 6.556 20 C -0.178 4.178 21 C 0.065 3.935 22 O -0.386 6.386 23 C 0.065 3.935 24 C -0.139 4.139 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.091 0.909 29 H 0.276 0.724 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.380 0.620 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.377 0.623 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.824 -12.766 2.544 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C -0.205 4.205 4 C 0.075 3.925 5 C -0.498 4.498 6 H 0.091 0.909 7 C -0.141 4.141 8 N -0.434 5.434 9 Si 0.729 3.271 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.189 1.189 13 C -0.146 4.146 14 C -0.182 4.182 15 C -0.003 4.003 16 N -0.398 5.398 17 C -0.010 4.010 18 C 0.083 3.917 19 O -0.362 6.362 20 C -0.217 4.217 21 C -0.012 4.012 22 O -0.304 6.304 23 C -0.012 4.012 24 C -0.178 4.178 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.105 0.895 32 H 0.215 0.785 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.225 0.775 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.196 -13.648 2.491 16.114 hybrid contribution 0.187 1.541 -0.087 1.554 sum -8.009 -12.108 2.403 14.714 Atomic orbital electron populations 1.20476 0.94119 1.00406 1.00047 1.18623 0.93320 0.92326 1.09264 1.20434 0.94242 0.94831 1.11030 1.17479 0.90646 0.93204 0.91139 1.19377 0.97777 0.95832 1.36826 0.90926 1.25799 0.98485 0.96975 0.92791 1.69861 1.17556 1.32438 1.23499 0.86399 0.79951 0.81940 0.78856 1.19536 1.20573 1.18855 1.20932 0.99672 0.91103 1.02906 1.20077 0.91576 0.97472 1.09072 1.17082 0.90819 0.84110 1.08286 1.43860 1.06234 1.02069 1.87678 1.21664 0.94464 0.83617 1.01285 1.21430 0.91057 0.95226 0.83959 1.86488 1.65719 1.43766 1.40248 1.22821 0.99493 0.99322 1.00017 1.22504 0.92885 0.83791 1.01974 1.87902 1.56397 1.41356 1.44792 1.22507 0.91258 0.97518 0.89868 1.22127 0.98558 0.93343 1.03725 0.93279 0.92774 0.93932 0.89048 0.91304 0.86426 0.89466 0.78506 0.92659 0.92442 0.77527 0.89858 0.90431 0.92728 0.89075 0.92347 0.88962 0.89813 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.56 9.55 36.01 0.34 -1.21 16 2 C -0.13 -2.83 5.86 -104.81 -0.61 -3.44 16 3 C -0.19 -4.51 9.37 -39.26 -0.37 -4.88 16 4 C 0.08 2.10 5.57 -106.79 -0.60 1.50 16 5 C -0.47 -12.63 9.03 -37.87 -0.34 -12.98 16 6 H 0.07 1.90 7.91 -52.48 -0.41 1.49 16 7 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 8 N -0.81 -21.37 10.96 55.54 0.61 -20.76 16 9 Si 0.90 19.20 29.60 -169.99 -5.03 14.17 16 10 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 13 C -0.13 -3.29 8.64 -39.26 -0.34 -3.63 16 14 C -0.16 -3.71 9.23 -39.76 -0.37 -4.07 16 15 C 0.09 1.97 6.65 -83.69 -0.56 1.42 16 16 N -0.76 -12.28 5.10 -58.50 -0.30 -12.58 16 17 C 0.12 1.66 4.07 -4.04 -0.02 1.65 16 18 C 0.12 1.44 0.72 -90.44 -0.07 1.37 16 19 O -0.56 -6.59 11.95 -35.23 -0.42 -7.01 16 20 C -0.18 -1.89 4.84 -26.59 -0.13 -2.01 16 21 C 0.07 0.65 6.69 37.21 0.25 0.90 16 22 O -0.39 -4.48 10.77 -35.23 -0.38 -4.86 16 23 C 0.07 0.66 6.69 37.20 0.25 0.91 16 24 C -0.14 -1.47 5.15 -26.59 -0.14 -1.61 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 27 H 0.04 0.61 6.53 -51.93 -0.34 0.27 16 28 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 30 H 0.12 3.19 6.16 -52.49 -0.32 2.87 16 31 H 0.09 1.86 6.68 -52.49 -0.35 1.51 16 32 H 0.38 5.32 4.36 -40.82 -0.18 5.14 16 33 H 0.06 0.83 7.92 -51.93 -0.41 0.41 16 34 H 0.06 0.92 7.94 -51.93 -0.41 0.50 16 35 H 0.38 3.81 8.20 45.56 0.37 4.18 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.78 6.70 -51.93 -0.35 0.43 16 38 H 0.05 0.53 7.82 -51.93 -0.41 0.13 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 41 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -29.04 338.23 -8.93 -37.97 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -5.73 Total: 12.22 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -2.78 Total: -24.25 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.31 Total: -33.34 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.80 Total: -11.87 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.04 -8.93 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167551866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.947 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds