Wall clock time and date at job start Tue Mar 31 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36359 * 119.91730 * 2 1 4 4 C 1.40874 * 119.83372 * 179.97438 * 3 2 1 5 5 C 1.41132 * 120.15260 * 180.02562 * 4 3 2 6 6 H 1.08006 * 120.00191 * 24.60037 * 5 4 3 7 7 C 1.39868 * 120.00078 * 204.60563 * 5 4 3 8 8 N 1.30903 * 119.99499 * 17.94417 * 7 5 4 9 9 Si 1.86799 * 120.00108 * 197.95311 * 7 5 4 10 10 H 1.48503 * 109.47498 * 89.99481 * 9 7 5 11 11 H 1.48500 * 109.46894 * 209.99420 * 9 7 5 12 12 H 1.48499 * 109.47114 * 329.99260 * 9 7 5 13 13 C 1.40900 * 119.68808 * 0.02562 * 4 3 2 14 14 C 1.36324 * 119.84060 * 359.71736 * 13 4 3 15 15 C 1.39544 * 119.91635 * 179.97438 * 2 1 3 16 16 N 1.38855 * 119.84515 * 0.02562 * 15 2 1 17 17 C 1.46500 * 119.99636 * 180.02562 * 16 15 2 18 18 C 1.52999 * 109.46866 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.54400 * 64.99659 * 18 17 16 20 20 C 1.53181 * 109.54542 * 304.82031 * 18 17 16 21 21 C 1.53099 * 109.16156 * 183.24178 * 20 18 17 22 22 O 1.42901 * 109.48653 * 57.47531 * 21 20 18 23 23 C 1.42905 * 114.09481 * 298.88877 * 22 21 20 24 24 C 1.53090 * 109.41702 * 61.15906 * 23 22 21 25 25 H 1.09001 * 109.46777 * 270.01789 * 1 2 3 26 26 H 1.08994 * 109.47245 * 30.01812 * 1 2 3 27 27 H 1.08997 * 109.47187 * 150.02418 * 1 2 3 28 28 H 1.07997 * 120.08215 * 359.96307 * 3 2 1 29 29 H 0.97006 * 119.99361 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.08038 * 180.02562 * 13 4 3 31 31 H 1.07998 * 119.92379 * 180.29354 * 14 13 4 32 32 H 0.96993 * 120.00052 * 359.97438 * 16 15 2 33 33 H 1.08995 * 109.47719 * 60.00070 * 17 16 15 34 34 H 1.09004 * 109.47479 * 299.99426 * 17 16 15 35 35 H 0.96696 * 113.99989 * 300.00205 * 19 18 17 36 36 H 1.09004 * 109.51894 * 303.06259 * 20 18 17 37 37 H 1.09003 * 109.51852 * 63.24200 * 20 18 17 38 38 H 1.09002 * 109.40296 * 297.49553 * 21 20 18 39 39 H 1.08995 * 109.49477 * 177.50814 * 21 20 18 40 40 H 1.09002 * 109.48622 * 301.17425 * 23 22 21 41 41 H 1.09008 * 109.48750 * 181.15002 * 23 22 21 42 42 H 1.08995 * 109.52482 * 182.48092 * 24 23 22 43 43 H 1.08997 * 109.57253 * 62.32880 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1819 0.0000 4 6 3.5959 1.1798 0.0005 5 6 4.3065 2.3992 0.0011 6 1 3.8436 3.2939 0.3905 7 6 5.6104 2.4489 -0.5027 8 7 6.0482 1.4917 -1.2809 9 14 6.7268 3.8811 -0.0650 10 1 7.4826 3.5596 1.1722 11 1 7.6795 4.1242 -1.1779 12 1 5.9060 5.0983 0.1586 13 6 4.2919 -0.0452 0.0005 14 6 3.5989 -1.2192 0.0058 15 6 2.2030 -1.2095 0.0005 16 7 1.5037 -2.4091 0.0005 17 6 2.2310 -3.6808 0.0017 18 6 1.2320 -4.8396 0.0021 19 8 0.4892 -4.8308 -1.2187 20 6 0.2726 -4.6887 1.1867 21 6 -0.6707 -5.8940 1.2260 22 8 0.0958 -7.0965 1.3176 23 6 0.9752 -7.3134 0.2123 24 6 1.9861 -6.1664 0.1335 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6471 2.1172 -0.0006 29 1 6.9527 1.5260 -1.6300 30 1 5.3719 -0.0542 0.0014 31 1 4.1311 -2.1589 0.0106 32 1 0.5338 -2.4051 0.0005 33 1 2.8567 -3.7409 0.8921 34 1 2.8581 -3.7417 -0.8879 35 1 -0.0159 -4.0195 -1.3659 36 1 0.8434 -4.6440 2.1142 37 1 -0.3081 -3.7735 1.0708 38 1 -1.2710 -5.9139 0.3164 39 1 -1.3268 -5.8142 2.0928 40 1 0.3965 -7.3519 -0.7107 41 1 1.5050 -8.2562 0.3486 42 1 2.6297 -6.3071 -0.7348 43 1 2.5934 -6.1521 1.0384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167551866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:00 Heat of formation + Delta-G solvation = -101.846035 kcal Electronic energy + Delta-G solvation = -23482.201776 eV Core-core repulsion = 20104.629440 eV Total energy + Delta-G solvation = -3377.572336 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.14241 -39.87878 -37.93649 -36.33162 -34.78978 -33.24137 -32.93450 -32.12998 -30.73174 -28.22749 -27.48975 -25.92140 -24.60258 -23.99271 -21.93439 -21.75260 -21.07471 -18.81115 -18.36224 -17.61155 -17.08586 -16.93566 -16.77990 -16.39881 -15.89843 -15.61550 -15.48248 -15.10993 -14.57981 -14.44803 -14.33499 -13.96067 -13.72769 -13.58877 -13.52222 -13.26456 -13.15414 -12.89794 -12.76196 -12.63552 -12.32843 -12.30153 -12.20803 -11.86008 -11.50199 -11.43501 -11.19331 -11.07517 -10.99778 -10.39898 -10.32943 -9.23403 -8.54871 -8.14960 -6.01985 1.10164 1.15842 1.38828 1.51325 1.57629 2.26092 2.75052 2.82160 2.95903 3.15742 3.63508 3.66728 3.77621 3.82286 4.02936 4.29922 4.34175 4.41391 4.45749 4.52340 4.62259 4.64982 4.69752 4.73817 4.77793 4.87992 4.94347 5.00605 5.05066 5.06140 5.08857 5.12978 5.23090 5.31247 5.52012 5.68129 5.86900 5.97778 6.19982 6.24382 6.39559 6.62375 6.65671 6.84813 7.07957 7.11646 7.28530 8.47057 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030839 B = 0.003324 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.736520 B = 8422.783007 C = 8974.069303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.138 4.138 3 C -0.196 4.196 4 C 0.039 3.961 5 C -0.506 4.506 6 H 0.067 0.933 7 C 0.032 3.968 8 N -0.841 5.841 9 Si 0.976 3.024 10 H -0.265 1.265 11 H -0.271 1.271 12 H -0.260 1.260 13 C -0.150 4.150 14 C -0.173 4.173 15 C 0.111 3.889 16 N -0.744 5.744 17 C 0.115 3.885 18 C 0.133 3.867 19 O -0.562 6.562 20 C -0.174 4.174 21 C 0.064 3.936 22 O -0.401 6.401 23 C 0.066 3.934 24 C -0.142 4.142 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.281 0.719 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.396 0.604 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.385 0.615 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.581 -13.861 2.922 17.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C -0.217 4.217 4 C 0.036 3.964 5 C -0.538 4.538 6 H 0.085 0.915 7 C -0.180 4.180 8 N -0.470 5.470 9 Si 0.798 3.202 10 H -0.190 1.190 11 H -0.196 1.196 12 H -0.184 1.184 13 C -0.170 4.170 14 C -0.195 4.195 15 C 0.012 3.988 16 N -0.382 5.382 17 C -0.010 4.010 18 C 0.092 3.908 19 O -0.369 6.369 20 C -0.212 4.212 21 C -0.012 4.012 22 O -0.320 6.320 23 C -0.010 4.010 24 C -0.180 4.180 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.233 0.767 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.234 0.766 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.073 0.927 41 H 0.128 0.872 42 H 0.103 0.897 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.000 -14.775 2.867 18.070 hybrid contribution 0.593 1.724 -0.215 1.836 sum -9.407 -13.051 2.652 16.305 Atomic orbital electron populations 1.20514 0.90151 1.02160 1.01797 1.19103 0.96260 0.91312 1.07537 1.20659 0.93631 0.96334 1.11027 1.17803 0.92082 0.93525 0.92958 1.19600 0.99397 0.96006 1.38748 0.91491 1.26610 0.99435 0.99831 0.92135 1.69932 1.18139 1.34414 1.24479 0.85299 0.77795 0.78391 0.78731 1.19005 1.19574 1.18428 1.20822 0.98855 0.92218 1.05129 1.20228 0.92904 0.97041 1.09351 1.17185 0.90324 0.85929 1.05321 1.43794 1.06969 1.01169 1.86275 1.21757 0.95163 0.83727 1.00386 1.21335 0.90659 0.94311 0.84505 1.86496 1.65714 1.44377 1.40306 1.22785 0.99321 1.00157 0.98963 1.22606 0.92713 0.82921 1.02963 1.87890 1.56737 1.42018 1.45378 1.22575 0.90977 0.98023 0.89442 1.22171 0.98758 0.93028 1.04020 0.91358 0.92128 0.91188 0.88746 0.90833 0.88666 0.88207 0.76693 0.92984 0.93918 0.76611 0.90515 0.89544 0.92294 0.87560 0.92657 0.87234 0.89674 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.67 9.55 71.24 0.68 -1.99 16 2 C -0.14 -5.75 5.86 -19.99 -0.12 -5.86 16 3 C -0.20 -9.69 9.37 22.48 0.21 -9.48 16 4 C 0.04 2.18 5.57 -21.27 -0.12 2.06 16 5 C -0.51 -28.64 9.03 23.38 0.21 -28.43 16 6 H 0.07 3.68 7.91 -2.91 -0.02 3.66 16 7 C 0.03 1.69 5.13 85.23 0.44 2.13 16 8 N -0.84 -46.46 10.96 21.82 0.24 -46.23 16 9 Si 0.98 40.47 29.60 68.60 2.03 42.50 16 10 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 12 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 13 C -0.15 -8.17 8.64 22.48 0.19 -7.97 16 14 C -0.17 -8.12 9.23 22.15 0.20 -7.91 16 15 C 0.11 4.56 6.65 38.67 0.26 4.81 16 16 N -0.74 -22.18 5.10 -338.99 -1.73 -23.91 16 17 C 0.12 3.11 4.07 86.38 0.35 3.46 16 18 C 0.13 2.75 0.72 -10.67 -0.01 2.75 16 19 O -0.56 -11.77 11.95 -148.98 -1.78 -13.55 16 20 C -0.17 -3.17 4.84 30.69 0.15 -3.02 16 21 C 0.06 1.10 6.69 72.02 0.48 1.58 16 22 O -0.40 -8.31 10.77 -148.98 -1.60 -9.91 16 23 C 0.07 1.18 6.69 72.01 0.48 1.67 16 24 C -0.14 -2.70 5.15 30.68 0.16 -2.54 16 25 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 27 H 0.07 1.69 6.53 -2.39 -0.02 1.68 16 28 H 0.09 4.46 8.06 -2.91 -0.02 4.43 16 29 H 0.28 14.17 8.30 -92.70 -0.77 13.40 16 30 H 0.10 5.50 6.16 -2.91 -0.02 5.48 16 31 H 0.10 4.30 6.68 -2.91 -0.02 4.28 16 32 H 0.40 9.56 4.36 -92.71 -0.40 9.16 16 33 H 0.05 1.48 7.92 -2.39 -0.02 1.46 16 34 H 0.04 1.31 7.94 -2.38 -0.02 1.29 16 35 H 0.38 6.51 8.20 -74.06 -0.61 5.90 16 36 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.09 1.41 6.70 -2.39 -0.02 1.39 16 38 H 0.06 0.97 7.82 -2.39 -0.02 0.95 16 39 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 1.03 7.82 -2.39 -0.02 1.01 16 41 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -65.00 338.23 0.74 -64.25 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: 0.01 Total: 35.59 kcal Atomic # 6 Polarization: -52.33 SS G_CDS: 3.57 Total: -48.75 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -1.49 Total: -70.13 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -3.38 Total: -23.47 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -65.00 0.74 -64.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167551866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.592 kcal (2) G-P(sol) polarization free energy of solvation -64.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds