Wall clock time and date at job start Tue Mar 31 2020 06:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00310 * 2 1 4 4 H 1.09001 * 109.52151 * 29.87338 * 3 2 1 5 5 C 1.53097 * 109.52305 * 269.68856 * 3 2 1 6 6 O 1.42908 * 109.41381 * 182.48201 * 5 3 2 7 7 C 1.42900 * 114.09585 * 61.16103 * 6 5 3 8 8 C 1.53104 * 109.48711 * 298.88423 * 7 6 5 9 9 C 1.53177 * 109.15745 * 57.47841 * 8 7 6 10 10 H 1.09005 * 109.54581 * 63.05952 * 9 8 7 11 11 N 1.46493 * 109.54549 * 183.24231 * 9 8 7 12 12 C 1.38865 * 120.00078 * 274.81946 * 11 9 8 13 13 C 1.39582 * 119.83931 * 0.02639 * 12 11 9 14 14 C 1.36319 * 120.16041 * 179.75995 * 13 12 11 15 15 C 1.40904 * 119.83417 * 0.48740 * 14 13 12 16 16 C 1.41140 * 120.15499 * 179.76516 * 15 14 13 17 17 H 1.08002 * 119.99829 * 155.22166 * 16 15 14 18 18 C 1.39861 * 119.99892 * 335.21892 * 16 15 14 19 19 N 1.30904 * 120.00240 * 342.18186 * 18 16 15 20 20 Si 1.86807 * 120.00082 * 162.18862 * 18 16 15 21 21 H 1.48494 * 109.47181 * 180.02562 * 20 18 16 22 22 H 1.48506 * 109.46479 * 299.99986 * 20 18 16 23 23 H 1.48498 * 109.46755 * 59.99465 * 20 18 16 24 24 C 1.40868 * 119.68832 * 359.48886 * 15 14 13 25 25 C 1.36351 * 119.83664 * 0.25278 * 24 15 14 26 26 C 1.50703 * 119.92172 * 179.97438 * 25 24 15 27 27 H 1.09000 * 109.47122 * 59.99424 * 1 2 3 28 28 H 1.08997 * 109.47013 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47014 * 299.99931 * 1 2 3 30 30 H 1.08996 * 109.47894 * 302.46434 * 5 3 2 31 31 H 1.08998 * 109.47946 * 62.48962 * 5 3 2 32 32 H 1.08993 * 109.48220 * 58.82315 * 7 6 5 33 33 H 1.08996 * 109.47992 * 178.85698 * 7 6 5 34 34 H 1.08997 * 109.45427 * 297.61908 * 8 7 6 35 35 H 1.08997 * 109.60193 * 177.42237 * 8 7 6 36 36 H 0.97002 * 120.00212 * 94.82243 * 11 9 8 37 37 H 1.08003 * 119.92063 * 359.97438 * 13 12 11 38 38 H 1.08003 * 120.08673 * 180.22542 * 14 13 12 39 39 H 0.97003 * 120.00049 * 179.97438 * 19 18 16 40 40 H 1.08006 * 120.07998 * 180.27454 * 24 15 14 41 41 H 1.09001 * 109.46930 * 89.99709 * 26 25 24 42 42 H 1.08999 * 109.47643 * 210.00057 * 26 25 24 43 43 H 1.09002 * 109.47068 * 330.00264 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3446 2.0005 0.5117 5 6 2.2256 1.7696 -1.4429 6 8 2.8597 3.0503 -1.4403 7 6 4.1472 3.0625 -0.8204 8 6 4.0112 2.6493 0.6476 9 6 3.3608 1.2645 0.7218 10 1 4.0087 0.5311 0.2417 11 7 3.1558 0.8938 2.1242 12 6 4.1841 0.2977 2.8422 13 6 5.4118 0.0538 2.2247 14 6 6.4273 -0.5266 2.9248 15 6 6.2319 -0.8897 4.2721 16 6 7.2771 -1.4955 5.0020 17 1 7.3010 -1.4151 6.0787 18 6 8.2817 -2.2000 4.3308 19 7 8.0898 -2.5998 3.0991 20 14 9.8975 -2.5707 5.1919 21 1 10.7879 -3.3223 4.2715 22 1 10.5529 -1.2970 5.5838 23 1 9.6361 -3.3866 6.4048 24 6 4.9903 -0.6399 4.8890 25 6 3.9853 -0.0539 4.1779 26 6 2.6560 0.2137 4.8358 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.8581 1.0518 -1.9651 31 1 1.2629 1.8415 -1.9491 32 1 4.8048 2.3616 -1.3344 33 1 4.5689 4.0659 -0.8780 34 1 3.3876 3.3732 1.1721 35 1 4.9974 2.6137 1.1103 36 1 2.3017 1.0648 2.5512 37 1 5.5587 0.3286 1.1906 38 1 7.3780 -0.7115 2.4468 39 1 8.7867 -3.0881 2.6335 40 1 4.8351 -0.9116 5.9227 41 1 2.6679 1.2050 5.2887 42 1 1.8643 0.1651 4.0882 43 1 2.4746 -0.5356 5.6064 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168196836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:44 Heat of formation + Delta-G solvation = -70.757096 kcal Electronic energy + Delta-G solvation = -23773.555030 eV Core-core repulsion = 20397.330812 eV Total energy + Delta-G solvation = -3376.224219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.95630 -38.04859 -37.32301 -35.21510 -33.49994 -31.45913 -30.85930 -30.41893 -28.48305 -26.69697 -25.76128 -24.99682 -23.54940 -23.05079 -21.04746 -19.92061 -19.72654 -17.09686 -16.78818 -16.54139 -16.24408 -16.01609 -15.25309 -15.02071 -14.79020 -14.52065 -14.00827 -13.58244 -13.29401 -13.19046 -12.89463 -12.78800 -12.39555 -12.20494 -11.93393 -11.70451 -11.50215 -11.46688 -11.34115 -11.16606 -10.98966 -10.81432 -10.75133 -10.53199 -10.29032 -10.10443 -9.65210 -9.37170 -9.23895 -9.15631 -8.52174 -7.32139 -6.59673 -6.32978 -4.00386 2.95431 3.08288 3.15614 3.18896 3.37395 3.44552 3.93157 4.07379 4.17523 4.62871 4.74440 4.84089 4.99250 5.04082 5.17327 5.23256 5.25304 5.41587 5.52536 5.56706 5.59327 5.72102 5.78666 5.87821 5.94840 6.05824 6.12043 6.25427 6.34786 6.39183 6.58002 6.89584 6.91046 6.97348 7.21772 7.25869 7.41512 7.58622 7.74382 7.88040 8.18156 8.32610 8.50614 8.71987 8.82700 9.09023 9.18424 10.40418 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020535 B = 0.004049 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.195355 B = 6913.295688 C = 7500.812600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.050 3.950 4 H 0.068 0.932 5 C 0.045 3.955 6 O -0.380 6.380 7 C 0.058 3.942 8 C -0.169 4.169 9 C 0.167 3.833 10 H 0.082 0.918 11 N -0.746 5.746 12 C 0.102 3.898 13 C -0.163 4.163 14 C -0.125 4.125 15 C 0.077 3.923 16 C -0.468 4.468 17 H 0.071 0.929 18 C 0.076 3.924 19 N -0.808 5.808 20 Si 0.902 3.098 21 H -0.281 1.281 22 H -0.266 1.266 23 H -0.268 1.268 24 C -0.184 4.184 25 C -0.133 4.133 26 C -0.093 4.093 27 H 0.038 0.962 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.383 0.617 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.276 0.724 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.502 7.935 -7.525 15.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.009 4.009 4 H 0.086 0.914 5 C -0.033 4.033 6 O -0.299 6.299 7 C -0.019 4.019 8 C -0.208 4.208 9 C 0.059 3.941 10 H 0.100 0.900 11 N -0.381 5.381 12 C 0.005 3.995 13 C -0.185 4.185 14 C -0.145 4.145 15 C 0.074 3.926 16 C -0.499 4.499 17 H 0.089 0.911 18 C -0.139 4.139 19 N -0.435 5.435 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.191 1.191 23 H -0.193 1.193 24 C -0.204 4.204 25 C -0.136 4.136 26 C -0.150 4.150 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.217 0.783 37 H 0.106 0.894 38 H 0.135 0.865 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.254 7.777 -7.928 15.116 hybrid contribution 0.362 -0.309 0.604 0.769 sum -9.892 7.468 -7.324 14.397 Atomic orbital electron populations 1.22811 0.81435 1.02806 0.99646 1.88040 1.19229 1.26424 1.94843 1.23110 0.96059 0.85381 0.96325 0.91420 1.23005 0.98571 0.85788 0.95960 1.87916 1.32709 1.29955 1.79301 1.22685 0.84500 1.02363 0.92341 1.22798 1.03377 0.97858 0.96799 1.20668 0.93715 0.95299 0.84389 0.90037 1.43801 1.14368 1.70885 1.09028 1.17103 0.88945 1.02744 0.90735 1.20073 0.93529 1.06948 0.97940 1.20922 0.98140 0.99811 0.95621 1.17456 0.91328 0.91564 0.92279 1.19322 1.06331 1.29735 0.94535 0.91068 1.25776 0.99502 0.93893 0.94764 1.69852 1.33259 1.28648 1.11781 0.86484 0.81779 0.79109 0.79926 1.20603 1.19120 1.19295 1.20430 0.93409 1.07842 0.98732 1.18614 0.95775 1.06444 0.92816 1.20469 0.95238 1.00219 0.99097 0.94333 0.89547 0.94082 0.92013 0.88922 0.92732 0.88549 0.91106 0.89356 0.78272 0.89442 0.86489 0.91313 0.89134 0.93381 0.93756 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.39 16 2 O -0.37 -5.15 10.28 -35.23 -0.36 -5.51 16 3 C 0.05 0.65 2.31 -26.59 -0.06 0.59 16 4 H 0.07 0.82 7.79 -51.93 -0.40 0.42 16 5 C 0.04 0.51 6.47 37.21 0.24 0.76 16 6 O -0.38 -4.74 10.77 -35.23 -0.38 -5.12 16 7 C 0.06 0.67 6.84 37.21 0.25 0.93 16 8 C -0.17 -2.27 5.66 -26.59 -0.15 -2.43 16 9 C 0.17 2.55 1.89 -67.75 -0.13 2.42 16 10 H 0.08 1.41 6.45 -51.93 -0.34 1.08 16 11 N -0.75 -13.12 5.05 -51.86 -0.26 -13.38 16 12 C 0.10 2.21 6.63 -83.69 -0.56 1.65 16 13 C -0.16 -3.80 8.79 -39.77 -0.35 -4.15 16 14 C -0.13 -3.28 8.64 -39.26 -0.34 -3.62 16 15 C 0.08 2.08 5.57 -106.79 -0.60 1.49 16 16 C -0.47 -12.81 9.03 -37.87 -0.34 -13.15 16 17 H 0.07 1.88 7.91 -52.49 -0.41 1.47 16 18 C 0.08 1.97 5.13 -17.34 -0.09 1.88 16 19 N -0.81 -21.66 10.96 55.54 0.61 -21.05 16 20 Si 0.90 19.39 29.60 -169.99 -5.03 14.35 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 C -0.18 -4.58 9.37 -39.27 -0.37 -4.94 16 25 C -0.13 -2.95 5.86 -104.81 -0.61 -3.57 16 26 C -0.09 -1.65 9.55 36.01 0.34 -1.31 16 27 H 0.04 0.32 7.96 -51.93 -0.41 -0.10 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.90 7.96 -51.93 -0.41 0.49 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.31 7.67 -51.93 -0.40 0.91 16 36 H 0.38 6.23 6.56 -40.82 -0.27 5.97 16 37 H 0.09 1.86 6.02 -52.48 -0.32 1.55 16 38 H 0.12 3.19 6.17 -52.48 -0.32 2.87 16 39 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 40 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.71 6.53 -51.93 -0.34 0.37 16 43 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -29.27 342.92 -8.48 -37.74 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.56 Total: 9.85 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -1.66 Total: -22.06 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.35 Total: -34.43 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.74 Total: -10.63 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.27 -8.48 -37.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168196836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.012 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds