Wall clock time and date at job start Tue Mar 31 2020 06:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00310 * 2 1 4 4 H 1.09001 * 109.52151 * 29.87338 * 3 2 1 5 5 C 1.53097 * 109.52305 * 269.68856 * 3 2 1 6 6 O 1.42908 * 109.41381 * 182.48201 * 5 3 2 7 7 C 1.42900 * 114.09585 * 61.16103 * 6 5 3 8 8 C 1.53104 * 109.48711 * 298.88423 * 7 6 5 9 9 C 1.53177 * 109.15745 * 57.47841 * 8 7 6 10 10 H 1.09005 * 109.54581 * 63.05952 * 9 8 7 11 11 N 1.46493 * 109.54549 * 183.24231 * 9 8 7 12 12 C 1.38865 * 120.00078 * 274.81946 * 11 9 8 13 13 C 1.39582 * 119.83931 * 0.02639 * 12 11 9 14 14 C 1.36319 * 120.16041 * 179.75995 * 13 12 11 15 15 C 1.40904 * 119.83417 * 0.48740 * 14 13 12 16 16 C 1.41140 * 120.15499 * 179.76516 * 15 14 13 17 17 H 1.08002 * 119.99829 * 155.22166 * 16 15 14 18 18 C 1.39861 * 119.99892 * 335.21892 * 16 15 14 19 19 N 1.30904 * 120.00240 * 342.18186 * 18 16 15 20 20 Si 1.86807 * 120.00082 * 162.18862 * 18 16 15 21 21 H 1.48494 * 109.47181 * 180.02562 * 20 18 16 22 22 H 1.48506 * 109.46479 * 299.99986 * 20 18 16 23 23 H 1.48498 * 109.46755 * 59.99465 * 20 18 16 24 24 C 1.40868 * 119.68832 * 359.48886 * 15 14 13 25 25 C 1.36351 * 119.83664 * 0.25278 * 24 15 14 26 26 C 1.50703 * 119.92172 * 179.97438 * 25 24 15 27 27 H 1.09000 * 109.47122 * 59.99424 * 1 2 3 28 28 H 1.08997 * 109.47013 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47014 * 299.99931 * 1 2 3 30 30 H 1.08996 * 109.47894 * 302.46434 * 5 3 2 31 31 H 1.08998 * 109.47946 * 62.48962 * 5 3 2 32 32 H 1.08993 * 109.48220 * 58.82315 * 7 6 5 33 33 H 1.08996 * 109.47992 * 178.85698 * 7 6 5 34 34 H 1.08997 * 109.45427 * 297.61908 * 8 7 6 35 35 H 1.08997 * 109.60193 * 177.42237 * 8 7 6 36 36 H 0.97002 * 120.00212 * 94.82243 * 11 9 8 37 37 H 1.08003 * 119.92063 * 359.97438 * 13 12 11 38 38 H 1.08003 * 120.08673 * 180.22542 * 14 13 12 39 39 H 0.97003 * 120.00049 * 179.97438 * 19 18 16 40 40 H 1.08006 * 120.07998 * 180.27454 * 24 15 14 41 41 H 1.09001 * 109.46930 * 89.99709 * 26 25 24 42 42 H 1.08999 * 109.47643 * 210.00057 * 26 25 24 43 43 H 1.09002 * 109.47068 * 330.00264 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3446 2.0005 0.5117 5 6 2.2256 1.7696 -1.4429 6 8 2.8597 3.0503 -1.4403 7 6 4.1472 3.0625 -0.8204 8 6 4.0112 2.6493 0.6476 9 6 3.3608 1.2645 0.7218 10 1 4.0087 0.5311 0.2417 11 7 3.1558 0.8938 2.1242 12 6 4.1841 0.2977 2.8422 13 6 5.4118 0.0538 2.2247 14 6 6.4273 -0.5266 2.9248 15 6 6.2319 -0.8897 4.2721 16 6 7.2771 -1.4955 5.0020 17 1 7.3010 -1.4151 6.0787 18 6 8.2817 -2.2000 4.3308 19 7 8.0898 -2.5998 3.0991 20 14 9.8975 -2.5707 5.1919 21 1 10.7879 -3.3223 4.2715 22 1 10.5529 -1.2970 5.5838 23 1 9.6361 -3.3866 6.4048 24 6 4.9903 -0.6399 4.8890 25 6 3.9853 -0.0539 4.1779 26 6 2.6560 0.2137 4.8358 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.8581 1.0518 -1.9651 31 1 1.2629 1.8415 -1.9491 32 1 4.8048 2.3616 -1.3344 33 1 4.5689 4.0659 -0.8780 34 1 3.3876 3.3732 1.1721 35 1 4.9974 2.6137 1.1103 36 1 2.3017 1.0648 2.5512 37 1 5.5587 0.3286 1.1906 38 1 7.3780 -0.7115 2.4468 39 1 8.7867 -3.0881 2.6335 40 1 4.8351 -0.9116 5.9227 41 1 2.6679 1.2050 5.2887 42 1 1.8643 0.1651 4.0882 43 1 2.4746 -0.5356 5.6064 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168196836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:43 Heat of formation + Delta-G solvation = -88.782737 kcal Electronic energy + Delta-G solvation = -23774.336681 eV Core-core repulsion = 20397.330812 eV Total energy + Delta-G solvation = -3377.005869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.07671 -39.73033 -38.28379 -36.78840 -35.19589 -33.17996 -32.34959 -31.43630 -30.20072 -27.51444 -27.49026 -26.54479 -24.98883 -24.10930 -22.50843 -21.74983 -21.12663 -18.75475 -18.25079 -17.71649 -17.42587 -17.23781 -16.77808 -16.21191 -16.08337 -15.68700 -15.32351 -15.06257 -14.62621 -14.60277 -14.37998 -14.05023 -13.87180 -13.64036 -13.46245 -13.21614 -13.16488 -12.73876 -12.66096 -12.49287 -12.41781 -12.28595 -12.25993 -11.95844 -11.57672 -11.45301 -11.17384 -11.04444 -11.01684 -10.33115 -10.26621 -9.20880 -8.52455 -8.10897 -5.99460 1.12967 1.18132 1.39338 1.50399 1.60167 2.27376 2.51687 2.76482 2.84230 3.04822 3.61155 3.78837 3.86910 3.95415 4.05969 4.15798 4.31849 4.37170 4.43256 4.43607 4.53133 4.57199 4.66245 4.69064 4.73168 4.84693 4.90179 4.92872 4.96964 5.04015 5.08191 5.12981 5.20584 5.32870 5.53926 5.71263 5.89622 5.97244 6.00376 6.21621 6.29817 6.42489 6.67965 6.87833 7.09923 7.14535 7.32130 8.49300 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020535 B = 0.004049 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.195355 B = 6913.295688 C = 7500.812600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.397 6.397 3 C 0.058 3.942 4 H 0.081 0.919 5 C 0.046 3.954 6 O -0.384 6.384 7 C 0.061 3.939 8 C -0.161 4.161 9 C 0.160 3.840 10 H 0.057 0.943 11 N -0.736 5.736 12 C 0.118 3.882 13 C -0.171 4.171 14 C -0.147 4.147 15 C 0.038 3.962 16 C -0.507 4.507 17 H 0.066 0.934 18 C 0.033 3.967 19 N -0.843 5.843 20 Si 0.975 3.025 21 H -0.270 1.270 22 H -0.263 1.263 23 H -0.262 1.262 24 C -0.196 4.196 25 C -0.142 4.142 26 C -0.087 4.087 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.117 0.883 32 H 0.055 0.945 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.394 0.606 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.281 0.719 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.292 9.169 -8.072 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.316 6.316 3 C -0.001 4.001 4 H 0.099 0.901 5 C -0.031 4.031 6 O -0.303 6.303 7 C -0.016 4.016 8 C -0.201 4.201 9 C 0.054 3.946 10 H 0.075 0.925 11 N -0.370 5.370 12 C 0.019 3.981 13 C -0.193 4.193 14 C -0.167 4.167 15 C 0.035 3.965 16 C -0.539 4.539 17 H 0.085 0.915 18 C -0.179 4.179 19 N -0.471 5.471 20 Si 0.797 3.203 21 H -0.195 1.195 22 H -0.187 1.187 23 H -0.187 1.187 24 C -0.216 4.216 25 C -0.146 4.146 26 C -0.144 4.144 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.135 0.865 32 H 0.073 0.927 33 H 0.136 0.864 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.229 0.771 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.094 9.035 -8.495 17.323 hybrid contribution 0.717 -0.631 0.696 1.182 sum -11.376 8.404 -7.799 16.152 Atomic orbital electron populations 1.23022 0.79412 1.03759 1.01119 1.88003 1.21530 1.26977 1.95070 1.23021 0.94584 0.85524 0.96945 0.90060 1.23071 0.99627 0.85351 0.95090 1.87921 1.32851 1.30348 1.79164 1.22728 0.84508 1.03625 0.90747 1.22683 1.02232 0.96786 0.98351 1.20850 0.95372 0.95522 0.82900 0.92513 1.43820 1.13624 1.69719 1.09866 1.17206 0.89165 1.00827 0.90880 1.20202 0.93781 1.06817 0.98543 1.20821 0.98308 1.01700 0.95890 1.17786 0.92580 0.93060 0.93069 1.19559 1.08200 1.31578 0.94539 0.91541 1.26595 1.02623 0.93201 0.95450 1.69928 1.34478 1.29478 1.13255 0.85368 0.77078 0.79017 0.78858 1.19474 1.18732 1.18652 1.20635 0.93553 1.08255 0.99150 1.19080 0.97270 1.05217 0.93078 1.20475 0.92830 1.01493 0.99588 0.92210 0.88992 0.93212 0.92480 0.86506 0.92662 0.86418 0.90373 0.91145 0.77051 0.88099 0.88569 0.90838 0.88860 0.91442 0.91772 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.82 113.37 1.23 1.62 16 2 O -0.40 -10.24 10.28 -148.98 -1.53 -11.78 16 3 C 0.06 1.36 2.31 30.69 0.07 1.43 16 4 H 0.08 1.69 7.79 -2.39 -0.02 1.67 16 5 C 0.05 0.94 6.47 72.01 0.47 1.41 16 6 O -0.38 -8.49 10.77 -148.98 -1.60 -10.09 16 7 C 0.06 1.28 6.84 72.02 0.49 1.78 16 8 C -0.16 -4.09 5.66 30.69 0.17 -3.92 16 9 C 0.16 4.67 1.89 45.11 0.09 4.76 16 10 H 0.06 1.96 6.45 -2.38 -0.02 1.94 16 11 N -0.74 -24.63 5.05 -317.97 -1.61 -26.24 16 12 C 0.12 5.09 6.63 38.67 0.26 5.35 16 13 C -0.17 -8.20 8.79 22.15 0.19 -8.01 16 14 C -0.15 -8.11 8.64 22.48 0.19 -7.92 16 15 C 0.04 2.15 5.57 -21.27 -0.12 2.03 16 16 C -0.51 -29.09 9.03 23.38 0.21 -28.88 16 17 H 0.07 3.69 7.91 -2.91 -0.02 3.67 16 18 C 0.03 1.78 5.13 85.22 0.44 2.21 16 19 N -0.84 -47.11 10.96 21.81 0.24 -46.87 16 20 Si 0.98 40.83 29.60 68.60 2.03 42.86 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 24 C -0.20 -9.97 9.37 22.47 0.21 -9.76 16 25 C -0.14 -6.25 5.86 -19.99 -0.12 -6.37 16 26 C -0.09 -2.86 9.55 71.24 0.68 -2.18 16 27 H 0.06 0.77 7.96 -2.39 -0.02 0.75 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 0.76 8.09 -2.39 -0.02 0.74 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.12 1.84 7.96 -2.39 -0.02 1.82 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 2.05 7.67 -2.39 -0.02 2.03 16 36 H 0.39 11.67 6.56 -92.71 -0.61 11.06 16 37 H 0.10 4.43 6.02 -2.91 -0.02 4.41 16 38 H 0.10 5.60 6.17 -2.91 -0.02 5.58 16 39 H 0.28 14.36 8.30 -92.71 -0.77 13.59 16 40 H 0.09 4.54 8.06 -2.91 -0.02 4.52 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 1.84 6.53 -2.39 -0.02 1.83 16 43 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 Total: -1.00 -65.80 342.92 2.39 -63.41 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.40 Total: 35.15 kcal Atomic # 6 Polarization: -50.91 SS G_CDS: 4.46 Total: -46.44 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -1.37 Total: -73.11 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -3.14 Total: -21.87 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -65.80 2.39 -63.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168196836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.372 kcal (2) G-P(sol) polarization free energy of solvation -65.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds