Wall clock time and date at job start Tue Mar 31 2020 07:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35958 * 116.99534 * 2 1 4 4 C 1.39416 * 119.82579 * 0.02562 * 3 2 1 5 5 C 1.38090 * 120.57569 * 180.02562 * 4 3 2 6 6 C 1.38721 * 120.20094 * 0.02562 * 5 4 3 7 7 N 1.38853 * 120.18447 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99953 * 359.72489 * 7 6 5 9 9 C 1.52999 * 109.47285 * 180.27371 * 8 7 6 10 10 H 1.08997 * 112.68237 * 313.98831 * 9 8 7 11 11 C 1.53364 * 113.39256 * 183.41831 * 9 8 7 12 12 C 1.53359 * 81.26257 * 218.61782 * 11 9 8 13 13 C 1.52997 * 113.39402 * 271.58757 * 12 11 9 14 14 C 1.53001 * 113.43644 * 141.38937 * 12 11 9 15 15 O 1.43351 * 113.38934 * 84.50680 * 9 8 7 16 16 C 1.41544 * 119.63293 * 0.22903 * 6 5 4 17 17 C 1.41028 * 120.27110 * 179.74722 * 16 6 5 18 18 H 1.08003 * 120.00449 * 25.47182 * 17 16 6 19 19 C 1.39906 * 119.99759 * 205.46391 * 17 16 6 20 20 N 1.30892 * 120.00162 * 15.18903 * 19 17 16 21 21 Si 1.86802 * 119.99846 * 195.18789 * 19 17 16 22 22 H 1.48502 * 109.46990 * 94.97089 * 21 19 17 23 23 H 1.48507 * 109.47099 * 214.96702 * 21 19 17 24 24 H 1.48494 * 109.47307 * 334.96701 * 21 19 17 25 25 C 1.37840 * 119.81819 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.47453 * 59.99904 * 1 2 3 27 27 H 1.09005 * 109.46545 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47094 * 299.99997 * 1 2 3 29 29 H 1.08004 * 119.71203 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.90744 * 179.97438 * 5 4 3 31 31 H 0.97003 * 120.00154 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.46946 * 300.27641 * 8 7 6 33 33 H 1.09007 * 109.47155 * 60.27164 * 8 7 6 34 34 H 1.09004 * 114.56837 * 331.70862 * 11 9 8 35 35 H 1.09004 * 114.56921 * 105.52168 * 11 9 8 36 36 H 1.09001 * 109.47758 * 178.41495 * 13 12 11 37 37 H 1.09002 * 109.47467 * 298.41623 * 13 12 11 38 38 H 1.09003 * 109.46969 * 58.41412 * 13 12 11 39 39 H 1.08997 * 109.47631 * 301.56182 * 14 12 11 40 40 H 1.09000 * 109.46865 * 61.56014 * 14 12 11 41 41 H 1.09002 * 109.47544 * 181.55818 * 14 12 11 42 42 H 0.96999 * 119.99838 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.10914 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2832 2.3783 0.0005 5 6 1.8939 3.6168 0.0000 6 6 3.2778 3.7125 -0.0016 7 7 3.8914 4.9581 -0.0027 8 6 3.0771 6.1759 -0.0082 9 6 3.9926 7.4017 -0.0151 10 1 4.8043 7.3241 0.7082 11 6 3.2313 8.7307 0.0627 12 6 4.3275 9.1477 -0.9255 13 6 5.5896 9.6798 -0.2437 14 6 3.8250 10.0694 -2.0385 15 8 4.4330 7.7756 -1.3271 16 6 4.0608 2.5334 -0.0076 17 6 5.4687 2.6151 -0.0147 18 1 5.9611 3.4886 0.3865 19 6 6.2276 1.5643 -0.5413 20 7 5.6555 0.6533 -1.2869 21 14 8.0576 1.4616 -0.1804 22 1 8.2827 0.5703 0.9859 23 1 8.7659 0.9145 -1.3654 24 1 8.5788 2.8180 0.1253 25 6 3.4229 1.2793 -0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2051 2.3130 0.0005 30 1 1.2923 4.5138 0.0000 31 1 4.8594 5.0219 -0.0042 32 1 2.4472 6.1877 -0.8977 33 1 2.4486 6.1968 0.8823 34 1 2.2269 8.7031 -0.3599 35 1 3.2827 9.2264 1.0322 36 1 6.3335 9.9296 -1.0002 37 1 5.3430 10.5721 0.3319 38 1 5.9915 8.9169 0.4231 39 1 3.0283 9.5712 -2.5909 40 1 3.4422 10.9916 -1.6014 41 1 4.6464 10.3021 -2.7162 42 1 6.1818 -0.0750 -1.6523 43 1 4.0100 0.3728 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168455620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:34 Heat of formation + Delta-G solvation = -29.444279 kcal Electronic energy + Delta-G solvation = -23198.734348 eV Core-core repulsion = 19824.301588 eV Total energy + Delta-G solvation = -3374.432760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.18563 -38.60415 -36.89482 -34.29491 -33.16104 -32.22688 -30.16429 -29.52876 -28.04825 -27.70239 -26.30278 -25.20961 -24.55337 -21.83462 -20.40516 -19.92194 -19.42356 -17.56352 -16.51004 -16.31313 -15.99229 -15.80198 -15.04199 -14.84336 -14.64645 -14.46933 -14.01982 -13.77237 -13.20359 -13.07968 -12.97190 -12.53454 -12.37935 -12.11651 -11.98765 -11.98205 -11.63069 -11.54707 -11.40418 -11.23896 -11.08093 -10.94699 -10.73385 -10.53168 -10.34569 -10.12833 -9.87011 -9.64947 -9.31056 -9.06387 -8.30968 -7.33626 -6.65141 -5.92464 -4.13242 2.84973 3.13932 3.16533 3.23349 3.30487 3.76927 4.01597 4.04812 4.48194 4.58919 4.67961 4.75577 4.81683 5.07664 5.19115 5.29893 5.38297 5.42353 5.52953 5.58681 5.71580 5.74715 5.77658 5.79884 5.86823 5.96454 6.01336 6.06020 6.11866 6.24626 6.29375 6.44139 6.49575 6.93951 7.05481 7.24381 7.52219 7.60470 7.70117 7.98029 8.12398 8.32505 8.66671 8.86727 8.92522 9.04187 9.19370 10.33529 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012106 B = 0.004829 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.385678 B = 5796.344964 C = 7799.051881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.331 6.331 3 C 0.091 3.909 4 C -0.277 4.277 5 C -0.151 4.151 6 C 0.095 3.905 7 N -0.747 5.747 8 C 0.139 3.861 9 C 0.051 3.949 10 H 0.093 0.907 11 C -0.172 4.172 12 C 0.073 3.927 13 C -0.156 4.156 14 C -0.143 4.143 15 O -0.350 6.350 16 C 0.097 3.903 17 C -0.460 4.460 18 H 0.074 0.926 19 C 0.076 3.924 20 N -0.793 5.793 21 Si 0.906 3.094 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.264 1.264 25 C -0.171 4.171 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.396 0.604 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.278 0.722 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 13.421 2.446 14.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.246 6.246 3 C 0.047 3.953 4 C -0.297 4.297 5 C -0.174 4.174 6 C -0.004 4.004 7 N -0.384 5.384 8 C 0.014 3.986 9 C -0.007 4.007 10 H 0.110 0.890 11 C -0.210 4.210 12 C 0.033 3.967 13 C -0.214 4.214 14 C -0.201 4.201 15 O -0.269 6.269 16 C 0.092 3.908 17 C -0.490 4.490 18 H 0.092 0.908 19 C -0.142 4.142 20 N -0.419 5.419 21 Si 0.731 3.269 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.192 4.192 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.231 0.769 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.306 12.989 2.047 13.559 hybrid contribution 0.823 0.137 0.086 0.838 sum -2.484 13.126 2.133 13.528 Atomic orbital electron populations 1.22693 0.81313 1.01497 1.00236 1.85997 1.18996 1.29189 1.90422 1.18813 0.92425 0.82340 1.01692 1.20164 0.96879 0.92165 1.20533 1.19741 0.92200 0.95663 1.09827 1.17851 0.91056 0.85136 1.06321 1.43839 1.07346 1.01267 1.85900 1.21166 0.93217 0.83648 1.00616 1.23448 0.96333 0.94693 0.86214 0.88982 1.24493 0.99740 0.96247 1.00516 1.22449 0.94599 0.85277 0.94340 1.22028 0.96817 1.01561 1.00961 1.21825 1.01739 0.98630 0.97866 1.90072 1.89665 1.18525 1.28623 1.16964 0.92782 0.88540 0.92480 1.19139 0.90838 1.03054 1.35959 0.90807 1.25804 1.00696 0.94808 0.92854 1.69862 1.38035 1.10903 1.23053 0.86344 0.82442 0.79412 0.78715 1.19507 1.20430 1.18827 1.20349 0.89243 0.98668 1.10979 0.93953 0.90222 0.94014 0.88997 0.89268 0.76888 0.92852 0.92425 0.88188 0.90200 0.91568 0.91233 0.91588 0.91508 0.91264 0.92039 0.91068 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 9.81 101.05 0.99 1.66 16 2 O -0.33 -7.71 10.49 -19.61 -0.21 -7.91 16 3 C 0.09 2.33 6.67 -39.29 -0.26 2.07 16 4 C -0.28 -6.50 9.03 -39.20 -0.35 -6.85 16 5 C -0.15 -3.50 9.28 -39.46 -0.37 -3.86 16 6 C 0.10 2.33 6.68 -83.24 -0.56 1.77 16 7 N -0.75 -15.68 5.63 -58.17 -0.33 -16.01 16 8 C 0.14 2.33 4.95 -4.04 -0.02 2.31 16 9 C 0.05 0.71 3.77 -39.30 -0.15 0.57 16 10 H 0.09 1.23 7.11 -51.93 -0.37 0.86 16 11 C -0.17 -1.82 7.31 -26.36 -0.19 -2.01 16 12 C 0.07 0.83 1.69 -103.19 -0.17 0.66 16 13 C -0.16 -1.50 9.27 37.16 0.34 -1.16 16 14 C -0.14 -1.38 9.43 37.16 0.35 -1.03 16 15 O -0.35 -5.54 12.21 -35.23 -0.43 -5.97 16 16 C 0.10 2.62 5.58 -106.65 -0.60 2.03 16 17 C -0.46 -12.15 8.51 -37.90 -0.32 -12.48 16 18 H 0.07 1.85 6.67 -52.48 -0.35 1.50 16 19 C 0.08 1.94 5.19 -17.33 -0.09 1.85 16 20 N -0.79 -21.32 10.88 55.55 0.60 -20.71 16 21 Si 0.91 19.18 29.59 -169.99 -5.03 14.15 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 25 C -0.17 -4.72 8.60 -38.80 -0.33 -5.06 16 26 H 0.04 0.70 7.65 -51.93 -0.40 0.30 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 29 H 0.09 1.91 6.26 -52.48 -0.33 1.58 16 30 H 0.09 1.83 6.70 -52.49 -0.35 1.48 16 31 H 0.40 8.37 6.68 -40.82 -0.27 8.10 16 32 H 0.05 0.95 7.94 -51.93 -0.41 0.53 16 33 H 0.06 0.90 7.94 -51.93 -0.41 0.49 16 34 H 0.10 1.01 8.12 -51.93 -0.42 0.58 16 35 H 0.08 0.69 8.11 -51.93 -0.42 0.26 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.67 6.87 -51.93 -0.36 0.31 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 43 H 0.13 3.70 6.15 -52.49 -0.32 3.38 16 LS Contribution 346.87 15.07 5.23 5.23 Total: -1.00 -30.49 346.87 -8.37 -38.87 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.48 Total: 11.90 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -1.73 Total: -19.54 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.28 Total: -36.72 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.64 Total: -13.89 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.49 -8.37 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168455620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.422 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds