Wall clock time and date at job start Tue Mar 31 2020 07:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35958 * 116.99534 * 2 1 4 4 C 1.39416 * 119.82579 * 0.02562 * 3 2 1 5 5 C 1.38090 * 120.57569 * 180.02562 * 4 3 2 6 6 C 1.38721 * 120.20094 * 0.02562 * 5 4 3 7 7 N 1.38853 * 120.18447 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99953 * 359.72489 * 7 6 5 9 9 C 1.52999 * 109.47285 * 180.27371 * 8 7 6 10 10 H 1.08997 * 112.68237 * 313.98831 * 9 8 7 11 11 C 1.53364 * 113.39256 * 183.41831 * 9 8 7 12 12 C 1.53359 * 81.26257 * 218.61782 * 11 9 8 13 13 C 1.52997 * 113.39402 * 271.58757 * 12 11 9 14 14 C 1.53001 * 113.43644 * 141.38937 * 12 11 9 15 15 O 1.43351 * 113.38934 * 84.50680 * 9 8 7 16 16 C 1.41544 * 119.63293 * 0.22903 * 6 5 4 17 17 C 1.41028 * 120.27110 * 179.74722 * 16 6 5 18 18 H 1.08003 * 120.00449 * 25.47182 * 17 16 6 19 19 C 1.39906 * 119.99759 * 205.46391 * 17 16 6 20 20 N 1.30892 * 120.00162 * 15.18903 * 19 17 16 21 21 Si 1.86802 * 119.99846 * 195.18789 * 19 17 16 22 22 H 1.48502 * 109.46990 * 94.97089 * 21 19 17 23 23 H 1.48507 * 109.47099 * 214.96702 * 21 19 17 24 24 H 1.48494 * 109.47307 * 334.96701 * 21 19 17 25 25 C 1.37840 * 119.81819 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.47453 * 59.99904 * 1 2 3 27 27 H 1.09005 * 109.46545 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47094 * 299.99997 * 1 2 3 29 29 H 1.08004 * 119.71203 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.90744 * 179.97438 * 5 4 3 31 31 H 0.97003 * 120.00154 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.46946 * 300.27641 * 8 7 6 33 33 H 1.09007 * 109.47155 * 60.27164 * 8 7 6 34 34 H 1.09004 * 114.56837 * 331.70862 * 11 9 8 35 35 H 1.09004 * 114.56921 * 105.52168 * 11 9 8 36 36 H 1.09001 * 109.47758 * 178.41495 * 13 12 11 37 37 H 1.09002 * 109.47467 * 298.41623 * 13 12 11 38 38 H 1.09003 * 109.46969 * 58.41412 * 13 12 11 39 39 H 1.08997 * 109.47631 * 301.56182 * 14 12 11 40 40 H 1.09000 * 109.46865 * 61.56014 * 14 12 11 41 41 H 1.09002 * 109.47544 * 181.55818 * 14 12 11 42 42 H 0.96999 * 119.99838 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.10914 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2832 2.3783 0.0005 5 6 1.8939 3.6168 0.0000 6 6 3.2778 3.7125 -0.0016 7 7 3.8914 4.9581 -0.0027 8 6 3.0771 6.1759 -0.0082 9 6 3.9926 7.4017 -0.0151 10 1 4.8043 7.3241 0.7082 11 6 3.2313 8.7307 0.0627 12 6 4.3275 9.1477 -0.9255 13 6 5.5896 9.6798 -0.2437 14 6 3.8250 10.0694 -2.0385 15 8 4.4330 7.7756 -1.3271 16 6 4.0608 2.5334 -0.0076 17 6 5.4687 2.6151 -0.0147 18 1 5.9611 3.4886 0.3865 19 6 6.2276 1.5643 -0.5413 20 7 5.6555 0.6533 -1.2869 21 14 8.0576 1.4616 -0.1804 22 1 8.2827 0.5703 0.9859 23 1 8.7659 0.9145 -1.3654 24 1 8.5788 2.8180 0.1253 25 6 3.4229 1.2793 -0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2051 2.3130 0.0005 30 1 1.2923 4.5138 0.0000 31 1 4.8594 5.0219 -0.0042 32 1 2.4472 6.1877 -0.8977 33 1 2.4486 6.1968 0.8823 34 1 2.2269 8.7031 -0.3599 35 1 3.2827 9.2264 1.0322 36 1 6.3335 9.9296 -1.0002 37 1 5.3430 10.5721 0.3319 38 1 5.9915 8.9169 0.4231 39 1 3.0283 9.5712 -2.5909 40 1 3.4422 10.9916 -1.6014 41 1 4.6464 10.3021 -2.7162 42 1 6.1818 -0.0750 -1.6523 43 1 4.0100 0.3728 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168455620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:34 Heat of formation + Delta-G solvation = -48.718074 kcal Electronic energy + Delta-G solvation = -23199.570123 eV Core-core repulsion = 19824.301588 eV Total energy + Delta-G solvation = -3375.268535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.17282 -40.41226 -38.63505 -35.99751 -34.95255 -33.18314 -31.71798 -31.19519 -29.54000 -28.45725 -27.71758 -26.97488 -26.14171 -23.30843 -21.96380 -21.68936 -20.31859 -19.42764 -18.08438 -17.58854 -17.48439 -17.16590 -16.58333 -16.34084 -16.24930 -15.95269 -15.29921 -14.94639 -14.81651 -14.39772 -14.22491 -13.98835 -13.71102 -13.43885 -13.19584 -13.08272 -12.97624 -12.88700 -12.78009 -12.73116 -12.59585 -12.48625 -12.23951 -11.85223 -11.82318 -11.59626 -11.27508 -11.16598 -10.97250 -10.65068 -10.03104 -9.31111 -8.57491 -7.76509 -6.11121 0.99152 1.32785 1.38416 1.51475 1.53368 2.23259 2.73207 2.82998 2.91467 3.00766 3.32752 3.78579 3.83306 3.95273 4.01069 4.15769 4.35850 4.39461 4.46818 4.51030 4.55096 4.58555 4.70642 4.72629 4.74650 4.76741 4.86753 4.95025 4.98464 5.08363 5.10482 5.15072 5.30920 5.32596 5.42326 5.48638 5.60161 5.74157 5.83376 6.02383 6.21346 6.38704 6.80510 6.97342 7.04098 7.22870 7.33233 8.43861 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012106 B = 0.004829 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.385678 B = 5796.344964 C = 7799.051881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.078 3.922 4 C -0.270 4.270 5 C -0.157 4.157 6 C 0.089 3.911 7 N -0.748 5.748 8 C 0.138 3.862 9 C 0.047 3.953 10 H 0.096 0.904 11 C -0.152 4.152 12 C 0.064 3.936 13 C -0.155 4.155 14 C -0.142 4.142 15 O -0.392 6.392 16 C 0.064 3.936 17 C -0.485 4.485 18 H 0.079 0.921 19 C 0.030 3.970 20 N -0.832 5.832 21 Si 0.980 3.020 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.255 1.255 25 C -0.203 4.203 26 H 0.050 0.950 27 H 0.113 0.887 28 H 0.055 0.945 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.391 0.609 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.059 0.941 42 H 0.282 0.718 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.192 15.686 3.278 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.033 3.967 4 C -0.290 4.290 5 C -0.180 4.180 6 C -0.011 4.011 7 N -0.382 5.382 8 C 0.013 3.987 9 C -0.011 4.011 10 H 0.114 0.886 11 C -0.190 4.190 12 C 0.025 3.975 13 C -0.212 4.212 14 C -0.199 4.199 15 O -0.312 6.312 16 C 0.059 3.941 17 C -0.515 4.515 18 H 0.097 0.903 19 C -0.183 4.183 20 N -0.459 5.459 21 Si 0.801 3.199 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.179 1.179 25 C -0.224 4.224 26 H 0.068 0.932 27 H 0.131 0.869 28 H 0.074 0.926 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.226 0.774 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.137 15.290 2.882 16.100 hybrid contribution 0.917 -0.548 -0.195 1.086 sum -3.220 14.742 2.687 15.327 Atomic orbital electron populations 1.23073 0.78102 1.04199 1.01204 1.85952 1.22347 1.28450 1.90320 1.18905 0.92120 0.83844 1.01786 1.20519 0.98394 0.91475 1.18644 1.20093 0.91982 0.96830 1.09139 1.18048 0.91744 0.85831 1.05479 1.44007 1.07551 1.01549 1.85130 1.21379 0.93528 0.83041 1.00729 1.23502 0.96721 0.94942 0.85916 0.88636 1.24429 0.99410 0.93432 1.01725 1.22777 0.95746 0.83765 0.95204 1.22047 0.95968 1.02305 1.00896 1.21853 1.01355 0.99263 0.97468 1.90049 1.90008 1.21439 1.29724 1.17319 0.93675 0.89478 0.93588 1.19404 0.91256 1.03976 1.36909 0.90324 1.26704 1.05456 0.94060 0.92114 1.69963 1.39971 1.11726 1.24221 0.85227 0.76388 0.79703 0.78565 1.19040 1.19817 1.17861 1.20301 0.90522 0.98117 1.13506 0.93162 0.86881 0.92622 0.85857 0.86288 0.77428 0.93838 0.90739 0.87564 0.87441 0.91794 0.88496 0.92468 0.92607 0.88520 0.92193 0.90723 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.81 113.37 1.11 2.06 16 2 O -0.36 -16.63 10.49 -93.07 -0.98 -17.61 16 3 C 0.08 4.05 6.67 22.46 0.15 4.20 16 4 C -0.27 -12.40 9.03 22.52 0.20 -12.20 16 5 C -0.16 -7.12 9.28 22.35 0.21 -6.91 16 6 C 0.09 4.42 6.68 38.96 0.26 4.68 16 7 N -0.75 -31.51 5.63 -337.97 -1.90 -33.41 16 8 C 0.14 4.45 4.95 86.38 0.43 4.88 16 9 C 0.05 1.25 3.77 22.45 0.08 1.33 16 10 H 0.10 2.44 7.11 -2.39 -0.02 2.43 16 11 C -0.15 -2.77 7.31 30.84 0.23 -2.55 16 12 C 0.06 1.33 1.69 -18.94 -0.03 1.29 16 13 C -0.15 -2.62 9.27 71.98 0.67 -1.96 16 14 C -0.14 -2.43 9.43 71.98 0.68 -1.76 16 15 O -0.39 -12.20 12.21 -148.98 -1.82 -14.02 16 16 C 0.06 3.60 5.58 -21.18 -0.12 3.48 16 17 C -0.49 -26.66 8.51 23.36 0.20 -26.46 16 18 H 0.08 4.07 6.67 -2.91 -0.02 4.05 16 19 C 0.03 1.59 5.19 85.24 0.44 2.03 16 20 N -0.83 -46.87 10.88 21.82 0.24 -46.63 16 21 Si 0.98 40.32 29.59 68.60 2.03 42.34 16 22 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 25 C -0.20 -11.74 8.60 22.78 0.20 -11.54 16 26 H 0.05 1.55 7.65 -2.39 -0.02 1.53 16 27 H 0.11 2.88 8.14 -2.38 -0.02 2.86 16 28 H 0.06 1.65 7.65 -2.39 -0.02 1.63 16 29 H 0.12 4.78 6.26 -2.91 -0.02 4.76 16 30 H 0.12 4.61 6.70 -2.91 -0.02 4.59 16 31 H 0.39 16.90 6.68 -92.71 -0.62 16.28 16 32 H 0.04 1.50 7.94 -2.39 -0.02 1.48 16 33 H 0.07 2.16 7.94 -2.38 -0.02 2.14 16 34 H 0.11 1.81 8.12 -2.39 -0.02 1.79 16 35 H 0.11 1.38 8.11 -2.38 -0.02 1.37 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.06 6.87 -2.39 -0.02 1.05 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.28 14.56 8.30 -92.71 -0.77 13.79 16 43 H 0.10 6.20 6.15 -2.91 -0.02 6.18 16 Total: -1.00 -69.57 346.87 2.66 -66.91 By element: Atomic # 1 Polarization: 41.44 SS G_CDS: 0.39 Total: 41.83 kcal Atomic # 6 Polarization: -44.12 SS G_CDS: 4.70 Total: -39.42 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -1.67 Total: -80.04 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -2.80 Total: -31.63 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Total: -69.57 2.66 -66.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168455620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.187 kcal (2) G-P(sol) polarization free energy of solvation -69.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds