Wall clock time and date at job start Tue Mar 31 2020 07:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35670 * 117.00334 * 2 1 4 4 C 1.38037 * 120.20728 * 359.97438 * 3 2 1 5 5 C 1.39220 * 119.98136 * 180.02562 * 4 3 2 6 6 N 1.38917 * 119.79909 * 179.97438 * 5 4 3 7 7 C 1.46497 * 119.99950 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47452 * 180.02562 * 7 6 5 9 9 H 1.09006 * 112.67568 * 51.01436 * 8 7 6 10 10 C 1.53363 * 113.39598 * 181.58038 * 8 7 6 11 11 C 1.53375 * 81.25792 * 141.38740 * 10 8 7 12 12 C 1.52998 * 113.39164 * 218.61461 * 11 10 8 13 13 C 1.53001 * 113.39000 * 88.41696 * 11 10 8 14 14 O 1.43345 * 88.44762 * 333.51562 * 11 10 8 15 15 C 1.39720 * 120.40245 * 0.02562 * 5 4 3 16 16 C 1.36237 * 120.42772 * 359.68937 * 15 5 4 17 17 C 1.40848 * 120.00647 * 0.56795 * 16 15 5 18 18 C 1.40969 * 120.19708 * 179.73660 * 17 16 15 19 19 H 1.07998 * 120.00067 * 205.28329 * 18 17 16 20 20 C 1.39847 * 119.99973 * 25.29240 * 18 17 16 21 21 N 1.30948 * 120.00164 * 17.43147 * 20 18 17 22 22 Si 1.86801 * 119.99844 * 197.43432 * 20 18 17 23 23 H 1.48494 * 109.47356 * 265.18873 * 22 20 18 24 24 H 1.48496 * 109.47081 * 25.19210 * 22 20 18 25 25 H 1.48507 * 109.46645 * 145.19099 * 22 20 18 26 26 H 1.08997 * 109.46832 * 60.00450 * 1 2 3 27 27 H 1.09003 * 109.47218 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47623 * 300.00157 * 1 2 3 29 29 H 1.07999 * 120.01229 * 0.03694 * 4 3 2 30 30 H 0.97003 * 120.00261 * 0.02562 * 6 5 4 31 31 H 1.08996 * 109.47608 * 300.00820 * 7 6 5 32 32 H 1.09005 * 109.46975 * 60.00595 * 7 6 5 33 33 H 1.08994 * 114.56960 * 254.47953 * 10 8 7 34 34 H 1.08996 * 114.56483 * 28.30076 * 10 8 7 35 35 H 1.08999 * 109.47185 * 178.41811 * 12 11 10 36 36 H 1.08998 * 109.47530 * 298.42521 * 12 11 10 37 37 H 1.09004 * 109.46531 * 58.42190 * 12 11 10 38 38 H 1.08995 * 109.47137 * 301.58114 * 13 11 10 39 39 H 1.08999 * 109.47376 * 61.57614 * 13 11 10 40 40 H 1.09001 * 109.47001 * 181.58109 * 13 11 10 41 41 H 1.07996 * 119.78699 * 179.97438 * 15 5 4 42 42 H 1.08000 * 119.99164 * 180.30128 * 16 15 5 43 43 H 0.96998 * 120.00256 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2974 2.3692 -0.0005 5 6 1.9344 3.6071 -0.0011 6 7 1.1784 4.7726 -0.0021 7 6 1.8441 6.0775 -0.0021 8 6 0.7910 7.1874 -0.0028 9 1 0.0424 7.0569 0.7787 10 6 1.3925 8.5976 -0.0417 11 6 0.1932 8.8301 -0.9690 12 6 0.5112 9.7407 -2.1566 13 6 -1.0766 9.2501 -0.2259 14 8 0.2258 7.4350 -1.2967 15 6 3.3295 3.6845 -0.0016 16 6 4.0834 2.5498 0.0047 17 6 3.4574 1.2881 -0.0002 18 6 4.2336 0.1114 0.0008 19 1 3.8267 -0.8043 -0.4020 20 6 5.5306 0.1297 0.5235 21 7 5.9068 1.1088 1.3074 22 14 6.7264 -1.2426 0.1034 23 1 6.6880 -2.2761 1.1690 24 1 6.3417 -1.8545 -1.1938 25 1 8.1001 -0.6878 0.0011 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2187 2.3169 -0.0003 30 1 0.2097 4.7223 -0.0021 31 1 2.4664 6.1681 0.8882 32 1 2.4676 6.1673 -0.8918 33 1 1.3451 9.1368 0.9044 34 1 2.3637 8.6626 -0.5321 35 1 -0.3734 9.8395 -2.7858 36 1 0.8090 10.7236 -1.7914 37 1 1.3246 9.3076 -2.7388 38 1 -1.3414 8.4841 0.5028 39 1 -0.9011 10.1952 0.2880 40 1 -1.8920 9.3703 -0.9393 41 1 3.8133 4.6500 -0.0024 42 1 5.1613 2.6178 0.0092 43 1 6.8065 1.1217 1.6697 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168456581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:38 Heat of formation + Delta-G solvation = -26.478180 kcal Electronic energy + Delta-G solvation = -22929.230013 eV Core-core repulsion = 19554.925873 eV Total energy + Delta-G solvation = -3374.304141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33173 -38.66298 -36.70456 -34.80340 -32.98150 -32.27045 -30.36138 -28.78163 -28.64788 -27.83351 -26.43916 -25.93715 -23.77396 -21.83819 -20.71167 -19.92420 -19.57781 -17.29429 -16.72238 -16.61405 -16.19943 -15.80144 -14.98410 -14.62283 -14.54495 -14.38512 -14.10080 -13.75092 -13.66296 -13.22176 -13.08188 -12.66862 -12.50112 -12.24539 -12.13415 -12.10380 -11.75126 -11.64077 -11.37373 -11.07394 -10.98796 -10.87297 -10.65154 -10.47148 -10.39404 -10.17263 -9.82214 -9.64987 -9.47677 -9.06455 -8.35744 -7.07805 -6.57098 -6.34032 -3.88098 2.95411 3.05844 3.21568 3.27588 3.37082 3.61069 3.90736 4.14957 4.33945 4.54531 4.60358 4.67627 4.82244 4.91117 5.01714 5.17635 5.25480 5.29271 5.42914 5.48766 5.64063 5.64873 5.73714 5.82494 5.83615 5.92106 5.95308 6.00898 6.03397 6.16240 6.22643 6.33457 6.44654 6.80368 7.04237 7.17580 7.39291 7.56283 7.80090 8.01004 8.17895 8.43936 8.59317 8.70128 8.90180 9.09521 9.27293 10.47852 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022525 B = 0.003333 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.786010 B = 8397.677840 C = 9329.484537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C 0.050 3.950 4 C -0.243 4.243 5 C 0.129 3.871 6 N -0.758 5.758 7 C 0.141 3.859 8 C 0.049 3.951 9 H 0.091 0.909 10 C -0.172 4.172 11 C 0.074 3.926 12 C -0.144 4.144 13 C -0.156 4.156 14 O -0.352 6.352 15 C -0.191 4.191 16 C -0.101 4.101 17 C 0.060 3.940 18 C -0.450 4.450 19 H 0.076 0.924 20 C 0.071 3.929 21 N -0.814 5.814 22 Si 0.903 3.097 23 H -0.274 1.274 24 H -0.263 1.263 25 H -0.279 1.279 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.095 0.905 30 H 0.385 0.615 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.125 0.875 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.157 14.554 -1.433 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.224 6.224 3 C 0.005 3.995 4 C -0.266 4.266 5 C 0.031 3.969 6 N -0.393 5.393 7 C 0.015 3.985 8 C -0.009 4.009 9 H 0.109 0.891 10 C -0.210 4.210 11 C 0.034 3.966 12 C -0.201 4.201 13 C -0.213 4.213 14 O -0.271 6.271 15 C -0.213 4.213 16 C -0.121 4.121 17 C 0.057 3.943 18 C -0.481 4.481 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.442 5.442 22 Si 0.728 3.272 23 H -0.200 1.200 24 H -0.187 1.187 25 H -0.204 1.204 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.113 0.887 30 H 0.218 0.782 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.108 0.892 42 H 0.143 0.857 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.782 14.383 -1.533 16.922 hybrid contribution -0.089 -0.345 0.078 0.365 sum -8.871 14.038 -1.456 16.670 Atomic orbital electron populations 1.22711 0.81932 1.01570 0.99844 1.85989 1.18079 1.28294 1.90016 1.18977 0.92181 0.82080 1.06262 1.20049 0.97094 0.91500 1.17993 1.17043 0.90433 0.84662 1.04797 1.43814 1.06524 1.02003 1.86932 1.21202 0.93748 0.82303 1.01241 1.23463 0.95330 0.95119 0.86960 0.89112 1.24488 0.99511 0.96101 1.00852 1.22468 0.94724 0.84429 0.94988 1.21831 1.02477 0.98679 0.97129 1.22023 0.96724 1.01993 1.00567 1.90038 1.84944 1.20659 1.31468 1.20011 0.91264 0.97775 1.12256 1.20693 0.99512 0.90248 1.01667 1.16917 0.87056 0.94064 0.96251 1.19196 0.97134 0.96598 1.35203 0.90548 1.25759 0.98785 0.96629 0.93067 1.69866 1.19151 1.31386 1.23837 0.86390 0.79446 0.81425 0.79906 1.19972 1.18716 1.20425 0.94318 0.90151 0.94243 0.88652 0.78244 0.91908 0.92453 0.90083 0.87987 0.92053 0.91147 0.91423 0.91726 0.91105 0.91581 0.89237 0.85687 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.81 101.05 0.99 1.63 16 2 O -0.31 -7.46 9.79 -18.71 -0.18 -7.65 16 3 C 0.05 1.30 6.71 -38.43 -0.26 1.04 16 4 C -0.24 -5.62 8.86 -39.29 -0.35 -5.97 16 5 C 0.13 2.88 6.66 -83.73 -0.56 2.32 16 6 N -0.76 -13.73 5.70 -58.54 -0.33 -14.06 16 7 C 0.14 2.14 4.93 -4.04 -0.02 2.12 16 8 C 0.05 0.60 3.77 -39.30 -0.15 0.45 16 9 H 0.09 1.01 7.11 -51.93 -0.37 0.64 16 10 C -0.17 -1.63 7.31 -26.35 -0.19 -1.82 16 11 C 0.07 0.73 1.69 -103.18 -0.17 0.56 16 12 C -0.14 -1.22 9.43 37.16 0.35 -0.87 16 13 C -0.16 -1.25 9.27 37.16 0.34 -0.90 16 14 O -0.35 -4.85 12.21 -35.23 -0.43 -5.28 16 15 C -0.19 -4.54 9.22 -39.75 -0.37 -4.91 16 16 C -0.10 -2.68 8.62 -39.31 -0.34 -3.02 16 17 C 0.06 1.69 5.58 -106.65 -0.59 1.09 16 18 C -0.45 -12.72 8.69 -37.95 -0.33 -13.05 16 19 H 0.08 2.16 7.66 -52.49 -0.40 1.76 16 20 C 0.07 1.89 5.13 -17.33 -0.09 1.80 16 21 N -0.81 -21.98 10.98 55.54 0.61 -21.37 16 22 Si 0.90 19.91 29.59 -169.99 -5.03 14.88 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H 0.04 0.64 7.66 -51.93 -0.40 0.25 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.04 0.66 7.66 -51.93 -0.40 0.26 16 29 H 0.10 1.95 6.29 -52.49 -0.33 1.62 16 30 H 0.39 6.41 8.47 -40.82 -0.35 6.07 16 31 H 0.06 0.95 7.93 -51.93 -0.41 0.53 16 32 H 0.06 0.94 7.92 -51.93 -0.41 0.53 16 33 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 34 H 0.10 0.95 8.12 -51.93 -0.42 0.53 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.53 6.87 -51.93 -0.36 0.18 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 1.92 6.67 -52.49 -0.35 1.57 16 42 H 0.13 3.42 6.19 -52.49 -0.32 3.09 16 43 H 0.27 6.78 8.30 -40.82 -0.34 6.44 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -30.98 349.08 -8.45 -39.43 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.61 Total: 8.34 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -1.73 Total: -19.54 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.28 Total: -35.43 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.61 Total: -12.93 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.98 -8.45 -39.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168456581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.948 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds