Wall clock time and date at job start Tue Mar 31 2020 07:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35670 * 117.00334 * 2 1 4 4 C 1.38037 * 120.20728 * 359.97438 * 3 2 1 5 5 C 1.39220 * 119.98136 * 180.02562 * 4 3 2 6 6 N 1.38917 * 119.79909 * 179.97438 * 5 4 3 7 7 C 1.46497 * 119.99950 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47452 * 180.02562 * 7 6 5 9 9 H 1.09006 * 112.67568 * 51.01436 * 8 7 6 10 10 C 1.53363 * 113.39598 * 181.58038 * 8 7 6 11 11 C 1.53375 * 81.25792 * 141.38740 * 10 8 7 12 12 C 1.52998 * 113.39164 * 218.61461 * 11 10 8 13 13 C 1.53001 * 113.39000 * 88.41696 * 11 10 8 14 14 O 1.43345 * 88.44762 * 333.51562 * 11 10 8 15 15 C 1.39720 * 120.40245 * 0.02562 * 5 4 3 16 16 C 1.36237 * 120.42772 * 359.68937 * 15 5 4 17 17 C 1.40848 * 120.00647 * 0.56795 * 16 15 5 18 18 C 1.40969 * 120.19708 * 179.73660 * 17 16 15 19 19 H 1.07998 * 120.00067 * 205.28329 * 18 17 16 20 20 C 1.39847 * 119.99973 * 25.29240 * 18 17 16 21 21 N 1.30948 * 120.00164 * 17.43147 * 20 18 17 22 22 Si 1.86801 * 119.99844 * 197.43432 * 20 18 17 23 23 H 1.48494 * 109.47356 * 265.18873 * 22 20 18 24 24 H 1.48496 * 109.47081 * 25.19210 * 22 20 18 25 25 H 1.48507 * 109.46645 * 145.19099 * 22 20 18 26 26 H 1.08997 * 109.46832 * 60.00450 * 1 2 3 27 27 H 1.09003 * 109.47218 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47623 * 300.00157 * 1 2 3 29 29 H 1.07999 * 120.01229 * 0.03694 * 4 3 2 30 30 H 0.97003 * 120.00261 * 0.02562 * 6 5 4 31 31 H 1.08996 * 109.47608 * 300.00820 * 7 6 5 32 32 H 1.09005 * 109.46975 * 60.00595 * 7 6 5 33 33 H 1.08994 * 114.56960 * 254.47953 * 10 8 7 34 34 H 1.08996 * 114.56483 * 28.30076 * 10 8 7 35 35 H 1.08999 * 109.47185 * 178.41811 * 12 11 10 36 36 H 1.08998 * 109.47530 * 298.42521 * 12 11 10 37 37 H 1.09004 * 109.46531 * 58.42190 * 12 11 10 38 38 H 1.08995 * 109.47137 * 301.58114 * 13 11 10 39 39 H 1.08999 * 109.47376 * 61.57614 * 13 11 10 40 40 H 1.09001 * 109.47001 * 181.58109 * 13 11 10 41 41 H 1.07996 * 119.78699 * 179.97438 * 15 5 4 42 42 H 1.08000 * 119.99164 * 180.30128 * 16 15 5 43 43 H 0.96998 * 120.00256 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2974 2.3692 -0.0005 5 6 1.9344 3.6071 -0.0011 6 7 1.1784 4.7726 -0.0021 7 6 1.8441 6.0775 -0.0021 8 6 0.7910 7.1874 -0.0028 9 1 0.0424 7.0569 0.7787 10 6 1.3925 8.5976 -0.0417 11 6 0.1932 8.8301 -0.9690 12 6 0.5112 9.7407 -2.1566 13 6 -1.0766 9.2501 -0.2259 14 8 0.2258 7.4350 -1.2967 15 6 3.3295 3.6845 -0.0016 16 6 4.0834 2.5498 0.0047 17 6 3.4574 1.2881 -0.0002 18 6 4.2336 0.1114 0.0008 19 1 3.8267 -0.8043 -0.4020 20 6 5.5306 0.1297 0.5235 21 7 5.9068 1.1088 1.3074 22 14 6.7264 -1.2426 0.1034 23 1 6.6880 -2.2761 1.1690 24 1 6.3417 -1.8545 -1.1938 25 1 8.1001 -0.6878 0.0011 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2187 2.3169 -0.0003 30 1 0.2097 4.7223 -0.0021 31 1 2.4664 6.1681 0.8882 32 1 2.4676 6.1673 -0.8918 33 1 1.3451 9.1368 0.9044 34 1 2.3637 8.6626 -0.5321 35 1 -0.3734 9.8395 -2.7858 36 1 0.8090 10.7236 -1.7914 37 1 1.3246 9.3076 -2.7388 38 1 -1.3414 8.4841 0.5028 39 1 -0.9011 10.1952 0.2880 40 1 -1.8920 9.3703 -0.9393 41 1 3.8133 4.6500 -0.0024 42 1 5.1613 2.6178 0.0092 43 1 6.8065 1.1217 1.6697 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168456581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:37 Heat of formation + Delta-G solvation = -46.169771 kcal Electronic energy + Delta-G solvation = -22930.083905 eV Core-core repulsion = 19554.925873 eV Total energy + Delta-G solvation = -3375.158032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.19957 -40.49004 -38.41933 -36.55316 -34.65686 -33.19220 -31.76071 -30.65252 -30.08683 -28.46594 -28.04699 -27.23911 -25.53408 -23.17814 -22.41137 -21.57597 -20.34931 -19.23290 -18.44310 -17.59049 -17.54059 -16.80181 -16.75238 -16.22662 -16.13446 -15.85916 -15.49341 -15.08843 -14.88411 -14.48899 -14.34640 -13.97890 -13.90353 -13.48238 -13.24911 -13.03397 -13.01776 -12.76799 -12.75633 -12.71358 -12.50942 -12.41990 -12.15293 -11.83732 -11.74480 -11.54638 -11.42040 -11.25174 -10.98375 -10.67306 -10.18004 -8.94778 -8.50318 -8.19231 -5.90391 1.10182 1.11402 1.41048 1.53048 1.58343 2.31696 2.62504 2.84094 2.90451 2.98315 3.27246 3.78177 3.80603 3.92821 3.98870 4.13645 4.34114 4.35518 4.42155 4.47509 4.49380 4.58041 4.70483 4.72101 4.73953 4.74476 4.86007 4.93275 4.96617 4.97261 5.09040 5.24145 5.28143 5.31273 5.40646 5.44779 5.46266 5.61186 5.87713 6.06889 6.26902 6.51007 6.78593 6.92578 7.07717 7.12705 7.36549 8.54782 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022525 B = 0.003333 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.786010 B = 8397.677840 C = 9329.484537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.338 6.338 3 C 0.045 3.955 4 C -0.252 4.252 5 C 0.148 3.852 6 N -0.748 5.748 7 C 0.136 3.864 8 C 0.051 3.949 9 H 0.105 0.895 10 C -0.160 4.160 11 C 0.067 3.933 12 C -0.144 4.144 13 C -0.153 4.153 14 O -0.387 6.387 15 C -0.205 4.205 16 C -0.113 4.113 17 C 0.013 3.987 18 C -0.489 4.489 19 H 0.060 0.940 20 C 0.030 3.970 21 N -0.845 5.845 22 Si 0.974 3.026 23 H -0.267 1.267 24 H -0.265 1.265 25 H -0.266 1.266 26 H 0.051 0.949 27 H 0.111 0.889 28 H 0.050 0.950 29 H 0.125 0.875 30 H 0.395 0.605 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.504 16.218 -1.104 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.252 6.252 3 C 0.000 4.000 4 C -0.275 4.275 5 C 0.048 3.952 6 N -0.382 5.382 7 C 0.011 3.989 8 C -0.007 4.007 9 H 0.122 0.878 10 C -0.198 4.198 11 C 0.028 3.972 12 C -0.201 4.201 13 C -0.211 4.211 14 O -0.307 6.307 15 C -0.227 4.227 16 C -0.134 4.134 17 C 0.010 3.990 18 C -0.521 4.521 19 H 0.079 0.921 20 C -0.181 4.181 21 N -0.475 5.475 22 Si 0.796 3.204 23 H -0.192 1.192 24 H -0.189 1.189 25 H -0.190 1.190 26 H 0.069 0.931 27 H 0.130 0.870 28 H 0.069 0.931 29 H 0.142 0.858 30 H 0.229 0.771 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.173 16.092 -1.204 19.076 hybrid contribution 0.112 -0.728 -0.047 0.738 sum -10.061 15.364 -1.252 18.408 Atomic orbital electron populations 1.23071 0.78686 1.04129 1.00888 1.85936 1.21498 1.27936 1.89872 1.19169 0.92045 0.83498 1.05298 1.20311 0.98489 0.90894 1.17848 1.17196 0.90323 0.86063 1.01642 1.43914 1.06984 1.01860 1.85450 1.21378 0.94831 0.81842 1.00802 1.23492 0.95089 0.95160 0.86967 0.87750 1.24460 0.99271 0.94108 1.01974 1.22756 0.95798 0.82918 0.95714 1.21862 1.02092 0.99459 0.96708 1.22035 0.95671 1.02949 1.00413 1.90017 1.85195 1.23193 1.32292 1.20155 0.92080 0.97727 1.12759 1.20625 0.99005 0.91052 1.02677 1.17267 0.88651 0.94524 0.98557 1.19280 0.98907 0.96436 1.37439 0.92128 1.26521 0.99851 0.99274 0.92404 1.69916 1.19855 1.33136 1.24574 0.85322 0.77349 0.78311 0.79410 1.19228 1.18919 1.18996 0.93052 0.87048 0.93136 0.85771 0.77058 0.91392 0.93712 0.87585 0.88086 0.91926 0.88831 0.92765 0.92012 0.88853 0.91567 0.87382 0.87430 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 9.81 113.37 1.11 2.04 16 2 O -0.34 -16.44 9.79 -89.86 -0.88 -17.32 16 3 C 0.05 2.39 6.71 23.02 0.15 2.54 16 4 C -0.25 -11.48 8.86 22.46 0.20 -11.28 16 5 C 0.15 6.52 6.66 38.61 0.26 6.78 16 6 N -0.75 -25.80 5.70 -339.11 -1.93 -27.73 16 7 C 0.14 3.93 4.93 86.38 0.43 4.35 16 8 C 0.05 1.12 3.77 22.45 0.08 1.20 16 9 H 0.10 2.02 7.11 -2.38 -0.02 2.01 16 10 C -0.16 -2.60 7.31 30.84 0.23 -2.37 16 11 C 0.07 1.17 1.69 -18.93 -0.03 1.14 16 12 C -0.14 -2.14 9.43 71.98 0.68 -1.46 16 13 C -0.15 -2.00 9.27 71.98 0.67 -1.33 16 14 O -0.39 -10.03 12.21 -148.98 -1.82 -11.85 16 15 C -0.20 -9.84 9.22 22.16 0.20 -9.64 16 16 C -0.11 -6.26 8.62 22.44 0.19 -6.07 16 17 C 0.01 0.77 5.58 -21.18 -0.12 0.65 16 18 C -0.49 -28.99 8.69 23.33 0.20 -28.79 16 19 H 0.06 3.62 7.66 -2.91 -0.02 3.60 16 20 C 0.03 1.65 5.13 85.21 0.44 2.09 16 21 N -0.85 -47.27 10.98 21.82 0.24 -47.03 16 22 Si 0.97 42.03 29.59 68.60 2.03 44.06 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 H 0.05 1.60 7.66 -2.39 -0.02 1.59 16 27 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.05 1.59 7.66 -2.39 -0.02 1.58 16 29 H 0.12 4.81 6.29 -2.91 -0.02 4.79 16 30 H 0.40 12.22 8.47 -92.71 -0.79 11.43 16 31 H 0.07 1.92 7.93 -2.39 -0.02 1.90 16 32 H 0.04 1.42 7.92 -2.38 -0.02 1.40 16 33 H 0.11 1.20 8.11 -2.39 -0.02 1.18 16 34 H 0.10 1.66 8.12 -2.39 -0.02 1.64 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.06 0.84 6.87 -2.39 -0.02 0.82 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.11 4.66 6.67 -2.91 -0.02 4.64 16 42 H 0.11 6.20 6.19 -2.91 -0.02 6.18 16 43 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 Total: -1.00 -70.06 349.08 2.56 -67.50 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.23 Total: 32.52 kcal Atomic # 6 Polarization: -44.85 SS G_CDS: 4.69 Total: -40.16 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -1.69 Total: -74.76 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -2.70 Total: -29.16 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -70.06 2.56 -67.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168456581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.335 kcal (2) G-P(sol) polarization free energy of solvation -70.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds