Wall clock time and date at job start Tue Mar 31 2020 07:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 113.03431 * 2 1 4 4 C 1.54030 * 113.86660 * 131.97846 * 2 1 3 5 5 C 1.54033 * 85.82385 * 91.57135 * 4 2 1 6 6 H 1.09000 * 113.86121 * 268.30291 * 5 4 2 7 7 C 1.52997 * 113.86704 * 136.72507 * 5 4 2 8 8 N 1.46499 * 109.46947 * 182.30830 * 7 5 4 9 9 C 1.39945 * 120.00052 * 179.97438 * 8 7 5 10 10 C 1.38855 * 120.01891 * 180.02562 * 9 8 7 11 11 C 1.38109 * 119.97824 * 179.97438 * 10 9 8 12 12 C 1.38699 * 120.02088 * 0.02562 * 11 10 9 13 13 O 1.36004 * 119.98183 * 179.97438 * 12 11 10 14 14 C 1.42899 * 116.99785 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46876 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.38705 * 120.03632 * 0.23668 * 12 11 10 24 24 C 1.38104 * 120.01652 * 359.48973 * 23 12 11 25 25 O 1.44182 * 85.65959 * 22.51330 * 5 4 2 26 26 H 1.08999 * 109.46827 * 288.01943 * 1 2 3 27 27 H 1.08994 * 109.47086 * 48.01965 * 1 2 3 28 28 H 1.08998 * 109.47034 * 168.02085 * 1 2 3 29 29 H 1.08998 * 109.47384 * 191.97994 * 3 2 1 30 30 H 1.09002 * 109.47114 * 311.97898 * 3 2 1 31 31 H 1.09000 * 109.47031 * 71.97603 * 3 2 1 32 32 H 1.09006 * 113.81731 * 337.34256 * 4 2 1 33 33 H 1.09005 * 113.92482 * 205.81160 * 4 2 1 34 34 H 1.09001 * 109.47208 * 62.31484 * 7 5 4 35 35 H 1.08994 * 109.47324 * 302.30954 * 7 5 4 36 36 H 0.96997 * 120.00449 * 0.02562 * 8 7 5 37 37 H 1.07997 * 120.01311 * 359.95748 * 10 9 8 38 38 H 1.08004 * 119.99214 * 179.97438 * 11 10 9 39 39 H 1.09004 * 109.47206 * 60.00288 * 14 13 12 40 40 H 1.08994 * 109.47548 * 299.99945 * 14 13 12 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.08005 * 119.98766 * 179.72434 * 23 12 11 43 43 H 1.08007 * 120.00807 * 180.26083 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1287 1.4080 0.0000 4 6 2.1532 -0.9421 1.0471 5 6 2.1464 -2.0037 -0.0689 6 1 1.2455 -2.6171 -0.0885 7 6 3.4333 -2.8274 -0.1478 8 7 3.3452 -3.7645 -1.2703 9 6 4.4104 -4.6297 -1.5448 10 6 4.3276 -5.5178 -2.6090 11 6 5.3795 -6.3708 -2.8795 12 6 6.5182 -6.3411 -2.0881 13 8 7.5534 -7.1819 -2.3548 14 6 8.6950 -7.0969 -1.4995 15 6 9.7315 -8.0963 -1.9445 16 1 9.5379 -8.7325 -2.7955 17 6 10.9295 -8.1942 -1.2689 18 7 11.1653 -7.4193 -0.2328 19 14 12.2172 -9.4277 -1.8252 20 1 12.6175 -9.1289 -3.2237 21 1 13.4056 -9.3361 -0.9393 22 1 11.6523 -10.7993 -1.7543 23 6 6.5995 -5.4581 -1.0215 24 6 5.5508 -4.6004 -0.7531 25 8 2.1117 -0.8870 -0.9803 26 1 -0.3633 0.3179 0.9773 27 1 -0.3633 0.6873 -0.7639 28 1 -0.3633 -1.0053 -0.2133 29 1 3.1960 1.3491 -0.2133 30 1 1.6383 2.0114 -0.7640 31 1 1.9782 1.8668 0.9772 32 1 1.4898 -1.1748 1.8801 33 1 3.1524 -0.6473 1.3680 34 1 3.5662 -3.3836 0.7802 35 1 4.2827 -2.1608 -0.2967 36 1 2.5490 -3.7849 -1.8239 37 1 3.4408 -5.5416 -3.2250 38 1 5.3151 -7.0620 -3.7069 39 1 8.3976 -7.3147 -0.4737 40 1 9.1134 -6.0918 -1.5508 41 1 12.0080 -7.4885 0.2427 42 1 7.4847 -5.4387 -0.4030 43 1 5.6161 -3.9100 0.0749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168461618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:47 Heat of formation + Delta-G solvation = -34.542616 kcal Electronic energy + Delta-G solvation = -22084.178653 eV Core-core repulsion = 18709.524812 eV Total energy + Delta-G solvation = -3374.653841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.11929 -39.30670 -37.22929 -34.74495 -32.84955 -32.57865 -30.60685 -30.40636 -28.37661 -27.97281 -27.17364 -25.47996 -23.48222 -22.41120 -21.08126 -20.77975 -19.63030 -17.49426 -16.86696 -16.67795 -16.51528 -16.23517 -15.62312 -14.91199 -14.62241 -14.48198 -14.32633 -14.11413 -13.70173 -13.62577 -13.26235 -12.98063 -12.74299 -12.57288 -12.50293 -12.27785 -12.04822 -11.97627 -11.89916 -11.48175 -11.06138 -11.00722 -10.93356 -10.75664 -10.40841 -10.31987 -10.07956 -9.99436 -9.18946 -8.99602 -8.52979 -8.40684 -6.58521 -6.18656 -4.21574 1.85417 2.22782 3.09599 3.29853 3.32306 3.36123 3.53402 3.92107 4.25879 4.36025 4.40705 4.43125 4.57268 4.70375 4.72605 4.93063 5.00545 5.11973 5.18264 5.18779 5.28564 5.34320 5.40983 5.42666 5.44868 5.55567 5.61305 5.82741 5.88135 5.91788 5.96991 6.05771 6.09182 6.46444 6.65153 6.72675 6.91052 7.13439 7.21880 7.26090 7.62292 7.75369 7.94606 8.05360 8.63595 8.94391 9.43358 10.92687 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035482 B = 0.002328 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.933637 B =12023.499501 C =12568.769814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.080 3.920 3 C -0.143 4.143 4 C -0.170 4.170 5 C 0.053 3.947 6 H 0.095 0.905 7 C 0.135 3.865 8 N -0.755 5.755 9 C 0.156 3.844 10 C -0.154 4.154 11 C -0.124 4.124 12 C 0.103 3.897 13 O -0.323 6.323 14 C 0.195 3.805 15 C -0.522 4.522 16 H 0.069 0.931 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.913 3.087 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.166 4.166 24 C -0.154 4.154 25 O -0.364 6.364 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.395 0.605 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.018 0.982 40 H 0.019 0.981 41 H 0.267 0.733 42 H 0.132 0.868 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.565 15.349 3.531 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 C -0.200 4.200 4 C -0.208 4.208 5 C -0.006 4.006 6 H 0.112 0.888 7 C 0.010 3.990 8 N -0.389 5.389 9 C 0.057 3.943 10 C -0.176 4.176 11 C -0.143 4.143 12 C 0.055 3.945 13 O -0.237 6.237 14 C 0.122 3.878 15 C -0.560 4.560 16 H 0.087 0.913 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.740 3.260 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.186 4.186 24 C -0.176 4.176 25 O -0.284 6.284 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.229 0.771 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.076 0.924 42 H 0.149 0.851 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -21.223 15.372 3.417 26.427 hybrid contribution 0.485 -0.436 0.020 0.652 sum -20.738 14.936 3.437 25.787 Atomic orbital electron populations 1.21958 0.93200 1.03041 1.02791 1.22760 0.93645 0.92327 0.87247 1.21795 1.01837 0.93823 1.02542 1.24792 1.03004 0.94746 0.98267 1.23601 0.98439 0.89884 0.88629 0.88766 1.21307 0.96080 0.90957 0.90656 1.44272 1.18579 1.41203 1.34887 1.17560 0.88672 0.92418 0.95625 1.20235 0.99500 0.98888 0.99026 1.20159 0.91986 1.01305 1.00860 1.19060 0.89580 0.91683 0.94224 1.86103 1.25557 1.55461 1.56531 1.20542 0.80341 0.97780 0.89145 1.20969 0.99370 1.20152 1.15496 0.91267 1.24941 0.98126 0.96472 0.94777 1.69948 1.25199 1.38712 1.19576 0.86313 0.79985 0.81099 0.78623 1.19888 1.21061 1.19893 1.21245 1.00135 0.97923 0.99251 1.20362 0.93396 1.02403 1.01437 1.89913 1.81532 1.21676 1.35294 0.91001 0.91481 0.91781 0.91307 0.91811 0.90896 0.90543 0.88301 0.91181 0.91744 0.77072 0.86455 0.85771 0.96378 0.96369 0.92382 0.85051 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.37 37.16 0.35 -0.54 16 2 C 0.08 0.60 1.82 -90.17 -0.16 0.43 16 3 C -0.14 -0.92 9.49 37.16 0.35 -0.57 16 4 C -0.17 -1.15 7.11 -25.65 -0.18 -1.33 16 5 C 0.05 0.45 4.16 -26.28 -0.11 0.34 16 6 H 0.09 0.70 7.84 -51.93 -0.41 0.30 16 7 C 0.14 1.39 4.99 -4.04 -0.02 1.37 16 8 N -0.75 -9.21 5.74 -58.59 -0.34 -9.55 16 9 C 0.16 2.41 6.66 -83.70 -0.56 1.86 16 10 C -0.15 -2.41 9.89 -39.40 -0.39 -2.80 16 11 C -0.12 -2.26 9.98 -39.46 -0.39 -2.66 16 12 C 0.10 2.22 6.69 -39.24 -0.26 1.96 16 13 O -0.32 -8.21 10.12 -19.75 -0.20 -8.41 16 14 C 0.19 5.37 4.49 36.01 0.16 5.53 16 15 C -0.52 -15.31 9.43 -34.44 -0.32 -15.64 16 16 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 19 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 23 C -0.17 -3.34 9.03 -39.46 -0.36 -3.69 16 24 C -0.15 -2.59 9.31 -39.40 -0.37 -2.96 16 25 O -0.36 -3.88 11.99 -35.23 -0.42 -4.31 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.38 7.58 -51.93 -0.39 -0.01 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 33 H 0.10 0.65 8.05 -51.93 -0.42 0.23 16 34 H 0.07 0.68 7.95 -51.93 -0.41 0.27 16 35 H 0.06 0.74 7.95 -51.93 -0.41 0.32 16 36 H 0.40 4.26 8.49 -40.82 -0.35 3.91 16 37 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.12 2.09 8.06 -52.48 -0.42 1.67 16 39 H 0.02 0.52 7.65 -51.93 -0.40 0.12 16 40 H 0.02 0.52 7.67 -51.93 -0.40 0.12 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.13 2.77 6.29 -52.48 -0.33 2.44 16 43 H 0.11 1.68 6.73 -52.48 -0.35 1.33 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -32.01 357.13 -9.02 -41.03 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.79 Total: 2.02 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -2.36 Total: -17.12 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.40 Total: -35.26 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.62 Total: -12.71 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.01 -9.02 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168461618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.483 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds