Wall clock time and date at job start Tue Mar 31 2020 07:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 113.03431 * 2 1 4 4 C 1.54030 * 113.86660 * 131.97846 * 2 1 3 5 5 C 1.54033 * 85.82385 * 91.57135 * 4 2 1 6 6 H 1.09000 * 113.86121 * 268.30291 * 5 4 2 7 7 C 1.52997 * 113.86704 * 136.72507 * 5 4 2 8 8 N 1.46499 * 109.46947 * 182.30830 * 7 5 4 9 9 C 1.39945 * 120.00052 * 179.97438 * 8 7 5 10 10 C 1.38855 * 120.01891 * 180.02562 * 9 8 7 11 11 C 1.38109 * 119.97824 * 179.97438 * 10 9 8 12 12 C 1.38699 * 120.02088 * 0.02562 * 11 10 9 13 13 O 1.36004 * 119.98183 * 179.97438 * 12 11 10 14 14 C 1.42899 * 116.99785 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46876 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.38705 * 120.03632 * 0.23668 * 12 11 10 24 24 C 1.38104 * 120.01652 * 359.48973 * 23 12 11 25 25 O 1.44182 * 85.65959 * 22.51330 * 5 4 2 26 26 H 1.08999 * 109.46827 * 288.01943 * 1 2 3 27 27 H 1.08994 * 109.47086 * 48.01965 * 1 2 3 28 28 H 1.08998 * 109.47034 * 168.02085 * 1 2 3 29 29 H 1.08998 * 109.47384 * 191.97994 * 3 2 1 30 30 H 1.09002 * 109.47114 * 311.97898 * 3 2 1 31 31 H 1.09000 * 109.47031 * 71.97603 * 3 2 1 32 32 H 1.09006 * 113.81731 * 337.34256 * 4 2 1 33 33 H 1.09005 * 113.92482 * 205.81160 * 4 2 1 34 34 H 1.09001 * 109.47208 * 62.31484 * 7 5 4 35 35 H 1.08994 * 109.47324 * 302.30954 * 7 5 4 36 36 H 0.96997 * 120.00449 * 0.02562 * 8 7 5 37 37 H 1.07997 * 120.01311 * 359.95748 * 10 9 8 38 38 H 1.08004 * 119.99214 * 179.97438 * 11 10 9 39 39 H 1.09004 * 109.47206 * 60.00288 * 14 13 12 40 40 H 1.08994 * 109.47548 * 299.99945 * 14 13 12 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.08005 * 119.98766 * 179.72434 * 23 12 11 43 43 H 1.08007 * 120.00807 * 180.26083 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1287 1.4080 0.0000 4 6 2.1532 -0.9421 1.0471 5 6 2.1464 -2.0037 -0.0689 6 1 1.2455 -2.6171 -0.0885 7 6 3.4333 -2.8274 -0.1478 8 7 3.3452 -3.7645 -1.2703 9 6 4.4104 -4.6297 -1.5448 10 6 4.3276 -5.5178 -2.6090 11 6 5.3795 -6.3708 -2.8795 12 6 6.5182 -6.3411 -2.0881 13 8 7.5534 -7.1819 -2.3548 14 6 8.6950 -7.0969 -1.4995 15 6 9.7315 -8.0963 -1.9445 16 1 9.5379 -8.7325 -2.7955 17 6 10.9295 -8.1942 -1.2689 18 7 11.1653 -7.4193 -0.2328 19 14 12.2172 -9.4277 -1.8252 20 1 12.6175 -9.1289 -3.2237 21 1 13.4056 -9.3361 -0.9393 22 1 11.6523 -10.7993 -1.7543 23 6 6.5995 -5.4581 -1.0215 24 6 5.5508 -4.6004 -0.7531 25 8 2.1117 -0.8870 -0.9803 26 1 -0.3633 0.3179 0.9773 27 1 -0.3633 0.6873 -0.7639 28 1 -0.3633 -1.0053 -0.2133 29 1 3.1960 1.3491 -0.2133 30 1 1.6383 2.0114 -0.7640 31 1 1.9782 1.8668 0.9772 32 1 1.4898 -1.1748 1.8801 33 1 3.1524 -0.6473 1.3680 34 1 3.5662 -3.3836 0.7802 35 1 4.2827 -2.1608 -0.2967 36 1 2.5490 -3.7849 -1.8239 37 1 3.4408 -5.5416 -3.2250 38 1 5.3151 -7.0620 -3.7069 39 1 8.3976 -7.3147 -0.4737 40 1 9.1134 -6.0918 -1.5508 41 1 12.0080 -7.4885 0.2427 42 1 7.4847 -5.4387 -0.4030 43 1 5.6161 -3.9100 0.0749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168461618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:47 Heat of formation + Delta-G solvation = -54.876789 kcal Electronic energy + Delta-G solvation = -22085.060409 eV Core-core repulsion = 18709.524812 eV Total energy + Delta-G solvation = -3375.535597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.75365 -40.82316 -38.79105 -36.01078 -34.95404 -33.23494 -31.96455 -31.45077 -29.98160 -28.70169 -28.40998 -26.51861 -25.37376 -23.62493 -22.33717 -22.10204 -20.19029 -19.17492 -18.44811 -17.98702 -17.50791 -17.25226 -16.67039 -16.47388 -16.35627 -15.87925 -15.58962 -15.09696 -14.93367 -14.48135 -14.41355 -14.17753 -13.86336 -13.62558 -13.51553 -13.22844 -13.15991 -13.09621 -12.91425 -12.81202 -12.72461 -12.48151 -12.26015 -12.08045 -11.77792 -11.68721 -11.29509 -11.27979 -10.76490 -10.63055 -10.30169 -9.89562 -8.37941 -7.96750 -6.52249 0.43566 0.75810 1.39067 1.44534 1.52893 2.29503 2.36030 2.69361 2.90797 2.94573 2.97596 3.30932 3.74251 3.89690 3.95822 4.00062 4.05689 4.12801 4.32245 4.39560 4.41532 4.52039 4.63153 4.69861 4.71334 4.72907 4.79165 4.85632 4.91307 4.99873 5.00976 5.06135 5.09559 5.25550 5.32778 5.35553 5.40406 5.48041 5.50378 5.62949 5.77302 5.88723 6.38129 6.55231 6.87591 6.94272 7.20663 8.74357 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035482 B = 0.002328 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.933637 B =12023.499501 C =12568.769814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.072 3.928 3 C -0.144 4.144 4 C -0.162 4.162 5 C 0.054 3.946 6 H 0.110 0.890 7 C 0.130 3.870 8 N -0.742 5.742 9 C 0.174 3.826 10 C -0.147 4.147 11 C -0.119 4.119 12 C 0.049 3.951 13 O -0.344 6.344 14 C 0.215 3.785 15 C -0.558 4.558 16 H 0.066 0.934 17 C 0.009 3.991 18 N -0.927 5.927 19 Si 0.990 3.010 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.264 1.264 23 C -0.178 4.178 24 C -0.160 4.160 25 O -0.398 6.398 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.407 0.593 37 H 0.157 0.843 38 H 0.136 0.864 39 H -0.003 1.003 40 H -0.005 1.005 41 H 0.274 0.726 42 H 0.107 0.893 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.517 15.827 3.622 28.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.033 3.967 3 C -0.201 4.201 4 C -0.200 4.200 5 C -0.004 4.004 6 H 0.127 0.873 7 C 0.006 3.994 8 N -0.376 5.376 9 C 0.073 3.927 10 C -0.169 4.169 11 C -0.138 4.138 12 C 0.003 3.997 13 O -0.258 6.258 14 C 0.141 3.859 15 C -0.595 4.595 16 H 0.084 0.916 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.812 3.188 20 H -0.189 1.189 21 H -0.197 1.197 22 H -0.188 1.188 23 C -0.198 4.198 24 C -0.182 4.182 25 O -0.318 6.318 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.242 0.758 37 H 0.174 0.826 38 H 0.154 0.846 39 H 0.015 0.985 40 H 0.013 0.987 41 H 0.082 0.918 42 H 0.125 0.875 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.239 15.893 3.515 28.372 hybrid contribution 0.882 -0.401 0.023 0.969 sum -22.357 15.492 3.538 27.429 Atomic orbital electron populations 1.21966 0.91853 1.03057 1.03887 1.23027 0.94678 0.92357 0.86592 1.21830 1.00848 0.93710 1.03703 1.24735 1.03427 0.93527 0.98305 1.23644 0.97757 0.89771 0.89226 0.87272 1.21469 0.97022 0.90712 0.90242 1.44372 1.17781 1.40167 1.35239 1.17678 0.88674 0.91904 0.94493 1.20599 0.99758 0.97492 0.99081 1.20404 0.91270 1.01755 1.00408 1.19474 0.90128 0.93322 0.96820 1.86012 1.25995 1.57366 1.56470 1.20062 0.81167 0.96161 0.88482 1.21322 1.00790 1.21169 1.16218 0.91557 1.26014 1.00195 0.98401 0.94443 1.70063 1.26102 1.39965 1.20392 0.85138 0.76818 0.78300 0.78577 1.18900 1.19727 1.18821 1.21145 1.00516 0.99043 0.99056 1.20487 0.93092 1.02150 1.02491 1.89888 1.82120 1.22926 1.36895 0.89130 0.91616 0.91880 0.92710 0.91769 0.88975 0.88480 0.88409 0.90084 0.92894 0.75757 0.82564 0.84569 0.98535 0.98679 0.91750 0.87526 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.37 71.98 0.67 -0.69 16 2 C 0.07 0.93 1.82 -10.50 -0.02 0.91 16 3 C -0.14 -1.64 9.49 71.98 0.68 -0.96 16 4 C -0.16 -1.78 7.11 31.29 0.22 -1.56 16 5 C 0.05 0.78 4.16 30.88 0.13 0.91 16 6 H 0.11 1.27 7.84 -2.39 -0.02 1.25 16 7 C 0.13 2.40 4.99 86.38 0.43 2.83 16 8 N -0.74 -16.09 5.74 -339.28 -1.95 -18.04 16 9 C 0.17 5.05 6.66 38.14 0.25 5.31 16 10 C -0.15 -4.27 9.89 22.39 0.22 -4.05 16 11 C -0.12 -4.32 9.98 22.35 0.22 -4.10 16 12 C 0.05 2.22 6.69 22.49 0.15 2.37 16 13 O -0.34 -18.57 10.12 -93.60 -0.95 -19.51 16 14 C 0.21 12.69 4.49 71.24 0.32 13.01 16 15 C -0.56 -34.08 9.43 25.60 0.24 -33.83 16 16 H 0.07 3.97 7.81 -2.91 -0.02 3.95 16 17 C 0.01 0.51 5.46 84.66 0.46 0.97 16 18 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 19 Si 0.99 44.69 29.54 68.60 2.03 46.72 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 23 C -0.18 -7.55 9.03 22.35 0.20 -7.35 16 24 C -0.16 -5.37 9.31 22.39 0.21 -5.16 16 25 O -0.40 -7.79 11.99 -148.98 -1.79 -9.58 16 26 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.59 7.58 -2.39 -0.02 0.57 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.68 8.10 -2.38 -0.02 0.66 16 33 H 0.10 1.10 8.05 -2.38 -0.02 1.08 16 34 H 0.08 1.37 7.95 -2.39 -0.02 1.35 16 35 H 0.05 1.13 7.95 -2.39 -0.02 1.12 16 36 H 0.41 7.34 8.49 -92.71 -0.79 6.56 16 37 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 38 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 39 H 0.00 -0.19 7.65 -2.38 -0.02 -0.21 16 40 H 0.00 -0.28 7.67 -2.39 -0.02 -0.30 16 41 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 42 H 0.11 4.94 6.29 -2.91 -0.02 4.92 16 43 H 0.13 3.87 6.73 -2.91 -0.02 3.85 16 Total: -1.00 -72.13 357.13 2.24 -69.89 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.21 Total: 17.79 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 4.40 Total: -31.39 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -1.66 Total: -73.92 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -2.73 Total: -29.09 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -72.13 2.24 -69.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168461618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.016 kcal (2) G-P(sol) polarization free energy of solvation -72.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds