Wall clock time and date at job start Tue Mar 31 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38240 * 120.00055 * 2 1 4 4 C 1.38234 * 119.99854 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99561 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00346 * 359.97438 * 4 3 2 7 7 C 1.38241 * 119.99748 * 359.97300 * 6 4 3 8 8 C 1.50695 * 119.99704 * 180.02562 * 7 6 4 9 9 H 1.09004 * 109.47366 * 339.99923 * 8 7 6 10 10 O 1.42895 * 109.47068 * 219.99809 * 8 7 6 11 11 C 1.53005 * 109.47240 * 100.00037 * 8 7 6 12 12 N 1.46895 * 109.47110 * 184.99639 * 11 8 7 13 13 C 1.47965 * 111.00064 * 170.00016 * 12 11 8 14 14 C 1.53931 * 86.18239 * 222.42041 * 13 12 11 15 15 O 1.42894 * 113.73160 * 269.25510 * 14 13 12 16 16 C 1.50703 * 113.73518 * 138.07915 * 14 13 12 17 17 H 1.08000 * 119.99719 * 17.15762 * 16 14 13 18 18 C 1.37875 * 119.99866 * 197.16125 * 16 14 13 19 19 N 1.31517 * 119.99338 * 194.40151 * 18 16 14 20 20 Si 1.86797 * 120.00469 * 14.39787 * 18 16 14 21 21 H 1.48497 * 109.47296 * 180.02562 * 20 18 16 22 22 H 1.48504 * 109.46916 * 300.00404 * 20 18 16 23 23 H 1.48498 * 109.47009 * 60.00178 * 20 18 16 24 24 C 1.48191 * 111.07148 * 70.57176 * 12 11 8 25 25 C 1.38232 * 119.99904 * 180.16863 * 2 1 3 26 26 H 1.08997 * 109.47305 * 89.99848 * 1 2 3 27 27 H 1.08996 * 109.46826 * 209.99859 * 1 2 3 28 28 H 1.09002 * 109.47144 * 329.99433 * 1 2 3 29 29 H 1.07998 * 119.99524 * 0.02562 * 3 2 1 30 30 H 1.08996 * 109.47136 * 269.97705 * 5 4 3 31 31 H 1.08994 * 109.47037 * 29.98399 * 5 4 3 32 32 H 1.08996 * 109.46723 * 149.98065 * 5 4 3 33 33 H 1.07991 * 119.99895 * 179.97438 * 6 4 3 34 34 H 0.96700 * 114.00272 * 300.00155 * 10 8 7 35 35 H 1.08998 * 109.46896 * 64.99859 * 11 8 7 36 36 H 1.08999 * 109.47094 * 305.00096 * 11 8 7 37 37 H 1.08994 * 113.75787 * 108.09572 * 13 12 11 38 38 H 1.09008 * 113.85381 * 336.75361 * 13 12 11 39 39 H 0.96707 * 114.00278 * 174.15409 * 15 14 13 40 40 H 0.96998 * 120.00402 * 354.86313 * 19 18 16 41 41 H 1.09008 * 113.75708 * 23.23197 * 24 12 11 42 42 H 1.09000 * 113.82289 * 251.80905 * 24 12 11 43 43 H 1.07998 * 120.00499 * 0.06737 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2717 0.0000 0.0016 7 6 3.5805 -1.1972 0.0027 8 6 4.3340 -2.5022 0.0045 9 1 5.3522 -2.3344 -0.3469 10 8 3.6787 -3.4317 -0.8607 11 6 4.3716 -3.0676 1.4257 12 7 5.2063 -4.2761 1.4500 13 6 5.4626 -4.7157 2.8394 14 6 6.9114 -4.9662 2.3837 15 8 7.1411 -6.2909 1.8996 16 6 7.9474 -4.5179 3.3821 17 1 7.6640 -4.3308 4.4073 18 6 9.2571 -4.3466 2.9867 19 7 10.2072 -4.2355 3.8893 20 14 9.6821 -4.2725 1.1692 21 1 11.1465 -4.0847 1.0105 22 1 9.2719 -5.5400 0.5129 23 1 8.9655 -3.1345 0.5394 24 6 6.6380 -3.9385 1.2708 25 6 2.1981 -1.1971 -0.0035 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6582 2.1324 0.0004 30 1 4.5164 2.8170 -1.0264 31 1 3.7446 3.2618 0.5146 32 1 5.2860 2.3719 0.5156 33 1 5.3517 0.0001 0.0016 34 1 2.7664 -3.6287 -0.6077 35 1 3.3597 -3.3184 1.7438 36 1 4.7909 -2.3227 2.1021 37 1 4.9269 -5.6228 3.1189 38 1 5.3659 -3.9201 3.5784 39 1 8.0242 -6.4270 1.5298 40 1 9.9794 -4.1991 4.8314 41 1 6.8857 -2.9139 1.5486 42 1 7.0399 -4.2260 0.2992 43 1 1.6582 -2.1325 -0.0074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169630580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:08 Heat of formation + Delta-G solvation = -45.202663 kcal Electronic energy + Delta-G solvation = -23498.010298 eV Core-core repulsion = 20122.894202 eV Total energy + Delta-G solvation = -3375.116095 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.14164 -39.21020 -36.95393 -34.42318 -33.68975 -32.50983 -32.45746 -29.74671 -27.60507 -26.88743 -26.49482 -25.45045 -24.17678 -21.45614 -20.98819 -20.38945 -19.05954 -17.86223 -17.03530 -16.19586 -16.03599 -15.62033 -15.10269 -14.85307 -14.71385 -14.21920 -14.00410 -13.74201 -13.42203 -13.40469 -13.07708 -12.92233 -12.76390 -12.70322 -12.19277 -12.07675 -11.94854 -11.79487 -11.53613 -11.26095 -11.16472 -10.92416 -10.89801 -10.54122 -10.30468 -9.84078 -9.65956 -9.28863 -8.88258 -8.71942 -8.67999 -8.37982 -7.97836 -6.62581 -4.35857 1.20670 1.23685 3.20000 3.28849 3.44762 3.54206 4.27774 4.32022 4.53614 4.59961 4.63196 4.79471 4.97084 4.99542 5.07988 5.12405 5.17057 5.31289 5.34935 5.38313 5.43231 5.44508 5.56530 5.61699 5.66916 5.76576 5.78693 5.91551 5.93267 5.97348 6.07460 6.19995 6.38940 6.40993 6.43504 6.53416 6.54578 6.87581 6.92148 7.00313 7.65736 7.73984 7.79339 8.16357 8.66769 8.91695 9.39032 10.72313 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.004163 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.685639 B = 6723.744356 C = 7398.336601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.082 4.082 3 C -0.126 4.126 4 C -0.080 4.080 5 C -0.115 4.115 6 C -0.115 4.115 7 C -0.101 4.101 8 C 0.153 3.847 9 H 0.106 0.894 10 O -0.541 6.541 11 C -0.006 4.006 12 N -0.464 5.464 13 C 0.023 3.977 14 C 0.207 3.793 15 O -0.564 6.564 16 C -0.619 4.619 17 H 0.064 0.936 18 C 0.035 3.965 19 N -0.893 5.893 20 Si 1.045 2.955 21 H -0.282 1.282 22 H -0.278 1.278 23 H -0.275 1.275 24 C -0.038 4.038 25 C -0.118 4.118 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.123 0.877 34 H 0.368 0.632 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.363 0.637 40 H 0.271 0.729 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.049 11.426 -8.479 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.082 4.082 3 C -0.144 4.144 4 C -0.080 4.080 5 C -0.172 4.172 6 C -0.133 4.133 7 C -0.102 4.102 8 C 0.094 3.906 9 H 0.124 0.876 10 O -0.345 6.345 11 C -0.135 4.135 12 N -0.186 5.186 13 C -0.105 4.105 14 C 0.166 3.834 15 O -0.371 6.371 16 C -0.657 4.657 17 H 0.082 0.918 18 C -0.172 4.172 19 N -0.526 5.526 20 Si 0.874 3.126 21 H -0.208 1.208 22 H -0.205 1.205 23 H -0.201 1.201 24 C -0.167 4.167 25 C -0.136 4.136 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.141 0.859 34 H 0.215 0.785 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.212 0.788 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.155 11.041 -10.083 21.290 hybrid contribution -0.950 0.798 1.889 2.260 sum -16.105 11.839 -8.194 21.602 Atomic orbital electron populations 1.20782 0.91191 1.02742 1.02277 1.19837 0.95943 0.92994 0.99433 1.20882 0.93500 0.97441 1.02543 1.19886 0.93798 0.95244 0.99080 1.20801 1.00090 0.93925 1.02347 1.20922 0.99970 0.91334 1.01115 1.20628 0.94361 0.96021 0.99153 1.20781 0.95840 0.83870 0.90129 0.87638 1.86655 1.30254 1.63960 1.53639 1.23305 0.99938 0.94191 0.96095 1.68634 1.06549 1.23692 1.19725 1.23928 0.96863 0.99804 0.89944 1.20259 0.92984 0.80243 0.89925 1.86360 1.37052 1.31608 1.82117 1.22338 0.95063 1.51179 0.97075 0.91811 1.25834 0.92239 0.92769 1.06403 1.70822 1.34222 1.44647 1.02929 0.84063 0.76540 0.77572 0.74462 1.20810 1.20532 1.20128 1.25077 0.89300 1.01000 1.01313 1.20716 0.93375 0.97578 1.01901 0.91197 0.91495 0.91637 0.86271 0.91146 0.91604 0.91288 0.85865 0.78548 0.90939 0.93405 0.90360 0.91279 0.78834 0.91835 0.91081 0.91020 0.86278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.08 -0.86 5.88 -104.62 -0.62 -1.48 16 3 C -0.13 -1.32 9.36 -39.58 -0.37 -1.69 16 4 C -0.08 -0.90 5.88 -104.62 -0.62 -1.52 16 5 C -0.11 -1.01 10.01 36.01 0.36 -0.64 16 6 C -0.12 -1.48 9.33 -39.58 -0.37 -1.85 16 7 C -0.10 -1.33 4.97 -104.62 -0.52 -1.85 16 8 C 0.15 2.30 3.26 -27.88 -0.09 2.21 16 9 H 0.11 1.73 7.28 -51.93 -0.38 1.35 16 10 O -0.54 -8.23 13.13 -35.23 -0.46 -8.69 16 11 C -0.01 -0.10 4.44 -3.82 -0.02 -0.11 16 12 N -0.46 -9.28 6.21 -238.02 -1.48 -10.76 16 13 C 0.02 0.50 7.36 -2.76 -0.02 0.47 16 14 C 0.21 5.04 1.07 -90.84 -0.10 4.94 16 15 O -0.56 -14.05 13.47 -35.23 -0.47 -14.52 16 16 C -0.62 -17.07 9.04 -34.44 -0.31 -17.38 16 17 H 0.06 1.89 8.06 -52.49 -0.42 1.47 16 18 C 0.03 0.96 5.44 -17.82 -0.10 0.86 16 19 N -0.89 -26.48 13.70 55.43 0.76 -25.72 16 20 Si 1.05 24.05 24.55 -169.99 -4.17 19.88 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -5.91 5.81 56.52 0.33 -5.58 16 23 H -0.28 -5.90 6.48 56.52 0.37 -5.53 16 24 C -0.04 -0.83 3.82 -2.63 -0.01 -0.84 16 25 C -0.12 -1.36 8.98 -39.58 -0.36 -1.72 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.12 1.51 8.04 -52.49 -0.42 1.09 16 34 H 0.37 4.25 7.50 45.56 0.34 4.59 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.81 7.70 -51.93 -0.40 0.41 16 37 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.07 1.43 7.75 -51.92 -0.40 1.03 16 39 H 0.36 8.48 6.07 45.56 0.28 8.76 16 40 H 0.27 8.03 8.73 -40.82 -0.36 7.67 16 41 H 0.07 1.54 7.62 -51.92 -0.40 1.15 16 42 H 0.07 1.56 6.86 -51.93 -0.36 1.20 16 43 H 0.12 1.16 6.78 -52.49 -0.36 0.80 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -31.58 344.62 -8.97 -40.55 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -5.57 Total: 15.17 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -2.77 Total: -21.10 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.72 Total: -36.48 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.94 Total: -23.21 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -4.17 Total: 19.88 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.58 -8.97 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169630580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.656 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds