Wall clock time and date at job start Tue Mar 31 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38240 * 120.00055 * 2 1 4 4 C 1.38234 * 119.99854 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99561 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00346 * 359.97438 * 4 3 2 7 7 C 1.38241 * 119.99748 * 359.97300 * 6 4 3 8 8 C 1.50695 * 119.99704 * 180.02562 * 7 6 4 9 9 H 1.09004 * 109.47366 * 339.99923 * 8 7 6 10 10 O 1.42895 * 109.47068 * 219.99809 * 8 7 6 11 11 C 1.53005 * 109.47240 * 100.00037 * 8 7 6 12 12 N 1.46895 * 109.47110 * 184.99639 * 11 8 7 13 13 C 1.47965 * 111.00064 * 170.00016 * 12 11 8 14 14 C 1.53931 * 86.18239 * 222.42041 * 13 12 11 15 15 O 1.42894 * 113.73160 * 269.25510 * 14 13 12 16 16 C 1.50703 * 113.73518 * 138.07915 * 14 13 12 17 17 H 1.08000 * 119.99719 * 17.15762 * 16 14 13 18 18 C 1.37875 * 119.99866 * 197.16125 * 16 14 13 19 19 N 1.31517 * 119.99338 * 194.40151 * 18 16 14 20 20 Si 1.86797 * 120.00469 * 14.39787 * 18 16 14 21 21 H 1.48497 * 109.47296 * 180.02562 * 20 18 16 22 22 H 1.48504 * 109.46916 * 300.00404 * 20 18 16 23 23 H 1.48498 * 109.47009 * 60.00178 * 20 18 16 24 24 C 1.48191 * 111.07148 * 70.57176 * 12 11 8 25 25 C 1.38232 * 119.99904 * 180.16863 * 2 1 3 26 26 H 1.08997 * 109.47305 * 89.99848 * 1 2 3 27 27 H 1.08996 * 109.46826 * 209.99859 * 1 2 3 28 28 H 1.09002 * 109.47144 * 329.99433 * 1 2 3 29 29 H 1.07998 * 119.99524 * 0.02562 * 3 2 1 30 30 H 1.08996 * 109.47136 * 269.97705 * 5 4 3 31 31 H 1.08994 * 109.47037 * 29.98399 * 5 4 3 32 32 H 1.08996 * 109.46723 * 149.98065 * 5 4 3 33 33 H 1.07991 * 119.99895 * 179.97438 * 6 4 3 34 34 H 0.96700 * 114.00272 * 300.00155 * 10 8 7 35 35 H 1.08998 * 109.46896 * 64.99859 * 11 8 7 36 36 H 1.08999 * 109.47094 * 305.00096 * 11 8 7 37 37 H 1.08994 * 113.75787 * 108.09572 * 13 12 11 38 38 H 1.09008 * 113.85381 * 336.75361 * 13 12 11 39 39 H 0.96707 * 114.00278 * 174.15409 * 15 14 13 40 40 H 0.96998 * 120.00402 * 354.86313 * 19 18 16 41 41 H 1.09008 * 113.75708 * 23.23197 * 24 12 11 42 42 H 1.09000 * 113.82289 * 251.80905 * 24 12 11 43 43 H 1.07998 * 120.00499 * 0.06737 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2717 0.0000 0.0016 7 6 3.5805 -1.1972 0.0027 8 6 4.3340 -2.5022 0.0045 9 1 5.3522 -2.3344 -0.3469 10 8 3.6787 -3.4317 -0.8607 11 6 4.3716 -3.0676 1.4257 12 7 5.2063 -4.2761 1.4500 13 6 5.4626 -4.7157 2.8394 14 6 6.9114 -4.9662 2.3837 15 8 7.1411 -6.2909 1.8996 16 6 7.9474 -4.5179 3.3821 17 1 7.6640 -4.3308 4.4073 18 6 9.2571 -4.3466 2.9867 19 7 10.2072 -4.2355 3.8893 20 14 9.6821 -4.2725 1.1692 21 1 11.1465 -4.0847 1.0105 22 1 9.2719 -5.5400 0.5129 23 1 8.9655 -3.1345 0.5394 24 6 6.6380 -3.9385 1.2708 25 6 2.1981 -1.1971 -0.0035 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6582 2.1324 0.0004 30 1 4.5164 2.8170 -1.0264 31 1 3.7446 3.2618 0.5146 32 1 5.2860 2.3719 0.5156 33 1 5.3517 0.0001 0.0016 34 1 2.7664 -3.6287 -0.6077 35 1 3.3597 -3.3184 1.7438 36 1 4.7909 -2.3227 2.1021 37 1 4.9269 -5.6228 3.1189 38 1 5.3659 -3.9201 3.5784 39 1 8.0242 -6.4270 1.5298 40 1 9.9794 -4.1991 4.8314 41 1 6.8857 -2.9139 1.5486 42 1 7.0399 -4.2260 0.2992 43 1 1.6582 -2.1325 -0.0074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169630580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:07 Heat of formation + Delta-G solvation = -70.935936 kcal Electronic energy + Delta-G solvation = -23499.126176 eV Core-core repulsion = 20122.894202 eV Total energy + Delta-G solvation = -3376.231974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.37643 -40.55447 -38.14123 -36.22644 -34.66223 -34.43220 -33.44043 -31.17474 -28.58551 -27.98589 -27.61119 -27.18730 -25.69192 -22.95224 -21.82193 -21.39238 -20.92182 -19.93033 -18.08771 -17.53009 -17.20145 -17.07219 -16.65434 -16.34765 -15.96687 -15.40362 -15.23255 -14.92392 -14.85220 -14.50527 -14.26005 -14.01948 -13.87848 -13.83768 -13.50038 -13.35480 -13.01701 -12.93138 -12.77142 -12.63497 -12.38485 -12.32027 -12.14132 -12.01462 -11.84726 -11.62449 -11.18274 -10.97375 -10.92573 -10.29434 -9.75306 -9.59673 -9.49941 -8.84316 -6.61207 0.33114 0.39982 1.37065 1.44620 1.63289 2.35355 2.65890 2.87829 2.89977 3.44108 3.49581 3.75299 3.79378 3.86872 3.90872 3.98982 4.05592 4.18855 4.20897 4.39542 4.44315 4.44955 4.55852 4.62400 4.64653 4.68174 4.73663 4.78187 4.79803 4.84872 4.97764 5.04210 5.17366 5.20656 5.28936 5.33677 5.56424 5.59585 5.66337 5.67502 5.85674 6.07106 6.09429 6.36978 6.77583 7.00393 7.23348 8.47981 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.004163 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.685639 B = 6723.744356 C = 7398.336601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.130 4.130 4 C -0.087 4.087 5 C -0.114 4.114 6 C -0.139 4.139 7 C -0.114 4.114 8 C 0.164 3.836 9 H 0.088 0.912 10 O -0.554 6.554 11 C -0.003 4.003 12 N -0.460 5.460 13 C 0.027 3.973 14 C 0.191 3.809 15 O -0.570 6.570 16 C -0.627 4.627 17 H 0.026 0.974 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 1.077 2.923 21 H -0.285 1.285 22 H -0.248 1.248 23 H -0.250 1.250 24 C -0.027 4.027 25 C -0.126 4.126 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.383 0.617 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.368 0.632 40 H 0.257 0.743 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.312 12.434 -10.432 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.085 4.085 3 C -0.148 4.148 4 C -0.087 4.087 5 C -0.171 4.171 6 C -0.157 4.157 7 C -0.115 4.115 8 C 0.104 3.896 9 H 0.106 0.894 10 O -0.361 6.361 11 C -0.132 4.132 12 N -0.183 5.183 13 C -0.102 4.102 14 C 0.150 3.850 15 O -0.378 6.378 16 C -0.664 4.664 17 H 0.045 0.955 18 C -0.208 4.208 19 N -0.558 5.558 20 Si 0.897 3.103 21 H -0.212 1.212 22 H -0.173 1.173 23 H -0.174 1.174 24 C -0.156 4.156 25 C -0.144 4.144 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.160 0.840 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.232 0.768 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.217 0.783 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.459 12.042 -12.022 24.379 hybrid contribution -0.331 0.506 2.583 2.653 sum -17.790 12.548 -9.439 23.728 Atomic orbital electron populations 1.20835 0.89028 1.03746 1.03210 1.20220 0.97579 0.92580 0.98141 1.21244 0.93353 0.98599 1.01619 1.20180 0.94511 0.95581 0.98471 1.20842 0.99911 0.93183 1.03133 1.21051 1.00015 0.92146 1.02461 1.20486 0.95087 0.95043 1.00918 1.20529 0.95505 0.84778 0.88768 0.89416 1.86613 1.31583 1.64106 1.53837 1.23358 1.00026 0.92504 0.97292 1.68579 1.05849 1.25556 1.18293 1.23881 0.95086 1.00215 0.91029 1.20373 0.93460 0.80548 0.90649 1.86342 1.37464 1.31873 1.82141 1.22504 0.96548 1.51042 0.96331 0.95524 1.27230 0.92215 0.91470 1.09893 1.70953 1.35089 1.47239 1.02499 0.83721 0.76534 0.79976 0.70027 1.21152 1.17331 1.17445 1.24868 0.90595 0.99801 1.00326 1.20951 0.92787 0.98914 1.01779 0.90173 0.90799 0.90407 0.83961 0.90193 0.90048 0.91668 0.86441 0.76756 0.88918 0.94015 0.89886 0.91098 0.78279 0.93413 0.91355 0.90358 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 71.24 0.71 -0.62 16 2 C -0.09 -1.56 5.88 -19.87 -0.12 -1.68 16 3 C -0.13 -2.40 9.36 22.27 0.21 -2.19 16 4 C -0.09 -1.82 5.88 -19.87 -0.12 -1.94 16 5 C -0.11 -1.79 10.01 71.24 0.71 -1.08 16 6 C -0.14 -3.45 9.33 22.27 0.21 -3.24 16 7 C -0.11 -2.88 4.97 -19.86 -0.10 -2.98 16 8 C 0.16 4.71 3.26 29.85 0.10 4.80 16 9 H 0.09 2.81 7.28 -2.39 -0.02 2.80 16 10 O -0.55 -15.79 13.13 -148.98 -1.96 -17.75 16 11 C 0.00 -0.09 4.44 86.31 0.38 0.29 16 12 N -0.46 -17.73 6.21 -910.15 -5.65 -23.38 16 13 C 0.03 1.12 7.36 86.41 0.64 1.76 16 14 C 0.19 9.19 1.07 -10.90 -0.01 9.17 16 15 O -0.57 -27.76 13.47 -148.98 -2.01 -29.77 16 16 C -0.63 -35.32 9.04 25.60 0.23 -35.09 16 17 H 0.03 1.65 8.06 -2.91 -0.02 1.62 16 18 C -0.01 -0.42 5.44 84.65 0.46 0.04 16 19 N -0.92 -56.29 13.70 21.45 0.29 -56.00 16 20 Si 1.08 47.53 24.55 68.60 1.68 49.21 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.25 -9.71 5.81 99.48 0.58 -9.14 16 23 H -0.25 -9.99 6.48 99.48 0.64 -9.35 16 24 C -0.03 -1.13 3.82 86.36 0.33 -0.80 16 25 C -0.13 -2.65 8.98 22.27 0.20 -2.45 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 28 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 29 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 32 H 0.06 1.06 8.08 -2.39 -0.02 1.04 16 33 H 0.12 2.91 8.04 -2.92 -0.02 2.89 16 34 H 0.38 7.91 7.50 -74.06 -0.56 7.36 16 35 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.04 1.37 7.70 -2.39 -0.02 1.35 16 37 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 38 H 0.07 2.93 7.75 -2.38 -0.02 2.91 16 39 H 0.37 16.63 6.07 -74.05 -0.45 16.18 16 40 H 0.26 15.90 8.73 -92.71 -0.81 15.09 16 41 H 0.07 2.91 7.62 -2.38 -0.02 2.89 16 42 H 0.08 3.22 6.86 -2.39 -0.02 3.21 16 43 H 0.14 2.26 6.78 -2.91 -0.02 2.24 16 Total: -1.00 -68.49 344.62 -4.02 -72.51 By element: Atomic # 1 Polarization: 41.40 SS G_CDS: -0.22 Total: 41.18 kcal Atomic # 6 Polarization: -39.85 SS G_CDS: 3.84 Total: -36.01 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -5.36 Total: -79.38 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -3.96 Total: -47.51 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.68 Total: 49.21 kcal Total: -68.49 -4.02 -72.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169630580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.577 kcal (2) G-P(sol) polarization free energy of solvation -68.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds