Wall clock time and date at job start Tue Mar 31 2020 07:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38166 * 120.03349 * 2 1 4 4 C 1.38242 * 120.05960 * 180.29796 * 3 2 1 5 5 C 1.38292 * 120.10864 * 359.68050 * 4 3 2 6 6 C 1.38119 * 120.05530 * 0.02562 * 5 4 3 7 7 C 1.38720 * 120.02912 * 179.67946 * 2 1 3 8 8 O 1.35905 * 120.05305 * 0.02562 * 7 2 1 9 9 C 1.42893 * 116.99771 * 185.14689 * 8 7 2 10 10 H 1.08995 * 109.47543 * 35.13572 * 9 8 7 11 11 C 1.53005 * 109.47010 * 275.12885 * 9 8 7 12 12 C 1.50702 * 109.46989 * 155.13445 * 9 8 7 13 13 O 1.21279 * 119.99914 * 4.99341 * 12 9 8 14 14 N 1.34771 * 120.00193 * 184.72230 * 12 9 8 15 15 C 1.46502 * 120.00736 * 180.27101 * 14 12 9 16 16 C 1.52997 * 109.47786 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47099 * 180.02562 * 16 15 14 18 18 C 1.50705 * 109.46984 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00030 * 359.97438 * 18 17 16 20 20 C 1.37870 * 119.99909 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00199 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00155 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47153 * 89.99764 * 22 20 18 24 24 H 1.48492 * 109.47279 * 210.00350 * 22 20 18 25 25 H 1.48508 * 109.46764 * 330.00248 * 22 20 18 26 26 H 1.09003 * 109.46961 * 270.32134 * 1 2 3 27 27 H 1.09007 * 109.47150 * 30.32037 * 1 2 3 28 28 H 1.09004 * 109.47286 * 150.31858 * 1 2 3 29 29 H 1.08001 * 119.97029 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.94464 * 179.69962 * 4 3 2 31 31 H 1.08000 * 119.96752 * 180.02562 * 5 4 3 32 32 H 1.08005 * 120.02321 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.46987 * 180.02562 * 11 9 8 34 34 H 1.08999 * 109.46995 * 300.00203 * 11 9 8 35 35 H 1.08998 * 109.47047 * 60.00527 * 11 9 8 36 36 H 0.97006 * 119.99906 * 0.27707 * 14 12 9 37 37 H 1.09001 * 109.46736 * 300.00452 * 15 14 12 38 38 H 1.09008 * 109.46561 * 59.99777 * 15 14 12 39 39 H 1.09002 * 109.46779 * 300.00273 * 16 15 14 40 40 H 1.08994 * 109.46847 * 60.00005 * 16 15 14 41 41 H 1.09002 * 109.47331 * 299.99694 * 17 16 15 42 42 H 1.09003 * 109.47397 * 60.00384 * 17 16 15 43 43 H 0.97007 * 119.99769 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5809 1.1968 -0.0062 5 6 4.2752 0.0008 -0.0058 6 6 3.5886 -1.1976 0.0003 7 6 2.2011 -1.2010 0.0067 8 8 1.5233 -2.3789 0.0128 9 6 2.2988 -3.5730 0.1337 10 1 3.1526 -3.3873 0.7853 11 6 2.7957 -4.0006 -1.2488 12 6 1.4467 -4.6679 0.7220 13 8 0.2667 -4.4751 0.9251 14 7 1.9947 -5.8633 1.0173 15 6 1.1652 -6.9298 1.5836 16 6 2.0255 -8.1718 1.8243 17 6 1.1589 -9.2857 2.4152 18 6 2.0064 -10.5090 2.6529 19 1 3.0578 -10.4936 2.4067 20 6 1.4395 -11.6477 3.1846 21 7 0.1590 -11.6666 3.4839 22 14 2.4898 -13.1642 3.4786 23 1 3.0642 -13.1109 4.8470 24 1 1.6509 -14.3817 3.3410 25 1 3.5895 -13.2056 2.4814 26 1 -0.3633 0.0058 1.0277 27 1 -0.3634 0.8871 -0.5188 28 1 -0.3634 -0.8928 -0.5089 29 1 1.6585 2.1315 -0.0004 30 1 4.1195 2.1328 -0.0111 31 1 5.3551 0.0039 -0.0102 32 1 4.1313 -2.1314 0.0011 33 1 3.3869 -4.9116 -1.1566 34 1 1.9419 -4.1863 -1.9003 35 1 3.4121 -3.2086 -1.6743 36 1 2.9386 -6.0175 0.8549 37 1 0.7386 -6.5948 2.5291 38 1 0.3617 -7.1730 0.8883 39 1 2.4524 -8.5068 0.8790 40 1 2.8286 -7.9283 2.5197 41 1 0.7315 -8.9510 3.3604 42 1 0.3559 -9.5292 1.7194 43 1 -0.2400 -12.4680 3.8577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180526357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:15 Heat of formation + Delta-G solvation = -70.573840 kcal Electronic energy + Delta-G solvation = -22233.670918 eV Core-core repulsion = 18857.454646 eV Total energy + Delta-G solvation = -3376.216272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85915 -39.43645 -37.56574 -35.44619 -33.58702 -33.17961 -32.08801 -30.86979 -30.17065 -26.99989 -26.89493 -24.92868 -23.36544 -22.24835 -21.74796 -20.78476 -19.88630 -18.40630 -17.38780 -16.41275 -16.08955 -15.97673 -15.87894 -15.22073 -15.09035 -14.70012 -14.48075 -14.08929 -13.87294 -13.43620 -13.33535 -13.30725 -12.70871 -12.46047 -12.41106 -12.31048 -12.00690 -11.87934 -11.77225 -11.56485 -11.30371 -11.03672 -10.92924 -10.78073 -10.62490 -9.91546 -9.88233 -9.41619 -9.15554 -9.09040 -8.89170 -8.39993 -8.35288 -6.04453 -4.07859 1.04004 1.17047 2.51463 2.59885 3.28860 3.35381 3.37786 3.48388 3.54268 4.35847 4.41770 4.52307 4.55441 4.59987 4.66901 4.79528 5.00905 5.03089 5.21913 5.29907 5.31344 5.37660 5.44026 5.57750 5.61863 5.64807 5.71491 5.75283 6.03494 6.06467 6.09943 6.20112 6.27218 6.36856 6.51296 6.53865 6.75224 6.94576 7.13618 7.56570 7.60113 7.72142 7.93843 8.24049 8.34871 8.98740 9.56524 11.06769 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037101 B = 0.002312 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.525168 B =12109.330561 C =12540.863095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.114 4.114 3 C -0.085 4.085 4 C -0.157 4.157 5 C -0.087 4.087 6 C -0.209 4.209 7 C 0.130 3.870 8 O -0.281 6.281 9 C 0.066 3.934 10 H 0.097 0.903 11 C -0.176 4.176 12 C 0.512 3.488 13 O -0.519 6.519 14 N -0.721 5.721 15 C 0.117 3.883 16 C -0.120 4.120 17 C 0.023 3.977 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.399 0.601 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.429 24.745 -9.308 27.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.114 4.114 3 C -0.103 4.103 4 C -0.175 4.175 5 C -0.105 4.105 6 C -0.228 4.228 7 C 0.085 3.915 8 O -0.193 6.193 9 C 0.006 3.994 10 H 0.115 0.885 11 C -0.233 4.233 12 C 0.296 3.704 13 O -0.394 6.394 14 N -0.373 5.373 15 C -0.005 4.005 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.148 0.852 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.232 0.768 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.182 24.713 -9.100 27.297 hybrid contribution 1.322 -1.070 0.178 1.710 sum 8.504 23.644 -8.922 26.663 Atomic orbital electron populations 1.20639 0.90290 1.02885 1.02618 1.19329 0.96794 0.90215 1.05087 1.20901 0.94147 0.96740 0.98471 1.21039 0.94218 0.98079 1.04187 1.20921 0.99766 0.91841 0.97941 1.21305 0.92975 0.99626 1.08892 1.18915 0.90462 0.85685 0.96458 1.86214 1.34478 1.11256 1.87357 1.22242 0.94056 0.84343 0.98789 0.88540 1.22335 1.02783 1.02858 0.95343 1.19998 0.88341 0.83161 0.78917 1.90745 1.15835 1.80867 1.51983 1.46094 1.13644 1.12681 1.64904 1.21707 0.94111 0.86286 0.98368 1.21895 0.98956 0.94146 1.00844 1.19035 0.94827 0.91414 0.96145 1.21187 0.95569 0.97282 1.42097 0.92637 1.25035 0.94975 0.98892 0.95592 1.69967 1.10906 1.28839 1.43498 0.86576 0.80225 0.82510 0.78563 1.20646 1.21190 1.19898 0.91203 0.91792 0.90757 0.85433 0.85984 0.85839 0.85218 0.90047 0.90545 0.90708 0.76750 0.91562 0.91518 0.92633 0.92653 0.96239 0.96217 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.79 36.00 0.35 -0.72 16 2 C -0.11 -1.22 5.89 -104.47 -0.62 -1.83 16 3 C -0.08 -0.74 9.70 -39.61 -0.38 -1.12 16 4 C -0.16 -1.25 10.04 -39.56 -0.40 -1.65 16 5 C -0.09 -0.71 10.04 -39.61 -0.40 -1.11 16 6 C -0.21 -1.97 8.24 -39.44 -0.32 -2.29 16 7 C 0.13 1.50 6.57 -39.22 -0.26 1.25 16 8 O -0.28 -3.73 8.38 -39.30 -0.33 -4.06 16 9 C 0.07 0.73 2.64 -27.88 -0.07 0.66 16 10 H 0.10 0.85 6.32 -51.93 -0.33 0.53 16 11 C -0.18 -1.50 9.12 37.16 0.34 -1.17 16 12 C 0.51 7.59 7.18 -10.99 -0.08 7.51 16 13 O -0.52 -10.13 16.51 -14.30 -0.24 -10.37 16 14 N -0.72 -9.80 5.51 -60.29 -0.33 -10.13 16 15 C 0.12 2.01 5.67 -4.04 -0.02 1.99 16 16 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 17 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 18 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 22 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 28 H 0.07 0.85 7.53 -51.93 -0.39 0.46 16 29 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 31 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.13 0.98 5.43 -52.48 -0.28 0.69 16 33 H 0.08 0.55 7.91 -51.93 -0.41 0.14 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.55 6.90 -51.93 -0.36 0.19 16 36 H 0.40 4.10 8.24 -40.82 -0.34 3.76 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -33.53 360.02 -9.03 -42.56 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.72 Total: -0.13 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -2.55 Total: -13.68 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.40 Total: -36.03 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.57 Total: -14.43 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.53 -9.03 -42.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180526357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.011 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds