Wall clock time and date at job start Tue Mar 31 2020 07:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38166 * 120.03349 * 2 1 4 4 C 1.38242 * 120.05960 * 180.29796 * 3 2 1 5 5 C 1.38292 * 120.10864 * 359.68050 * 4 3 2 6 6 C 1.38119 * 120.05530 * 0.02562 * 5 4 3 7 7 C 1.38720 * 120.02912 * 179.67946 * 2 1 3 8 8 O 1.35905 * 120.05305 * 0.02562 * 7 2 1 9 9 C 1.42893 * 116.99771 * 185.14689 * 8 7 2 10 10 H 1.08995 * 109.47543 * 35.13572 * 9 8 7 11 11 C 1.53005 * 109.47010 * 275.12885 * 9 8 7 12 12 C 1.50702 * 109.46989 * 155.13445 * 9 8 7 13 13 O 1.21279 * 119.99914 * 4.99341 * 12 9 8 14 14 N 1.34771 * 120.00193 * 184.72230 * 12 9 8 15 15 C 1.46502 * 120.00736 * 180.27101 * 14 12 9 16 16 C 1.52997 * 109.47786 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47099 * 180.02562 * 16 15 14 18 18 C 1.50705 * 109.46984 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00030 * 359.97438 * 18 17 16 20 20 C 1.37870 * 119.99909 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00199 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00155 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47153 * 89.99764 * 22 20 18 24 24 H 1.48492 * 109.47279 * 210.00350 * 22 20 18 25 25 H 1.48508 * 109.46764 * 330.00248 * 22 20 18 26 26 H 1.09003 * 109.46961 * 270.32134 * 1 2 3 27 27 H 1.09007 * 109.47150 * 30.32037 * 1 2 3 28 28 H 1.09004 * 109.47286 * 150.31858 * 1 2 3 29 29 H 1.08001 * 119.97029 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.94464 * 179.69962 * 4 3 2 31 31 H 1.08000 * 119.96752 * 180.02562 * 5 4 3 32 32 H 1.08005 * 120.02321 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.46987 * 180.02562 * 11 9 8 34 34 H 1.08999 * 109.46995 * 300.00203 * 11 9 8 35 35 H 1.08998 * 109.47047 * 60.00527 * 11 9 8 36 36 H 0.97006 * 119.99906 * 0.27707 * 14 12 9 37 37 H 1.09001 * 109.46736 * 300.00452 * 15 14 12 38 38 H 1.09008 * 109.46561 * 59.99777 * 15 14 12 39 39 H 1.09002 * 109.46779 * 300.00273 * 16 15 14 40 40 H 1.08994 * 109.46847 * 60.00005 * 16 15 14 41 41 H 1.09002 * 109.47331 * 299.99694 * 17 16 15 42 42 H 1.09003 * 109.47397 * 60.00384 * 17 16 15 43 43 H 0.97007 * 119.99769 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5809 1.1968 -0.0062 5 6 4.2752 0.0008 -0.0058 6 6 3.5886 -1.1976 0.0003 7 6 2.2011 -1.2010 0.0067 8 8 1.5233 -2.3789 0.0128 9 6 2.2988 -3.5730 0.1337 10 1 3.1526 -3.3873 0.7853 11 6 2.7957 -4.0006 -1.2488 12 6 1.4467 -4.6679 0.7220 13 8 0.2667 -4.4751 0.9251 14 7 1.9947 -5.8633 1.0173 15 6 1.1652 -6.9298 1.5836 16 6 2.0255 -8.1718 1.8243 17 6 1.1589 -9.2857 2.4152 18 6 2.0064 -10.5090 2.6529 19 1 3.0578 -10.4936 2.4067 20 6 1.4395 -11.6477 3.1846 21 7 0.1590 -11.6666 3.4839 22 14 2.4898 -13.1642 3.4786 23 1 3.0642 -13.1109 4.8470 24 1 1.6509 -14.3817 3.3410 25 1 3.5895 -13.2056 2.4814 26 1 -0.3633 0.0058 1.0277 27 1 -0.3634 0.8871 -0.5188 28 1 -0.3634 -0.8928 -0.5089 29 1 1.6585 2.1315 -0.0004 30 1 4.1195 2.1328 -0.0111 31 1 5.3551 0.0039 -0.0102 32 1 4.1313 -2.1314 0.0011 33 1 3.3869 -4.9116 -1.1566 34 1 1.9419 -4.1863 -1.9003 35 1 3.4121 -3.2086 -1.6743 36 1 2.9386 -6.0175 0.8549 37 1 0.7386 -6.5948 2.5291 38 1 0.3617 -7.1730 0.8883 39 1 2.4524 -8.5068 0.8790 40 1 2.8286 -7.9283 2.5197 41 1 0.7315 -8.9510 3.3604 42 1 0.3559 -9.5292 1.7194 43 1 -0.2400 -12.4680 3.8577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180526357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:15 Heat of formation + Delta-G solvation = -90.684994 kcal Electronic energy + Delta-G solvation = -22234.543003 eV Core-core repulsion = 18857.454646 eV Total energy + Delta-G solvation = -3377.088357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.73583 -40.49599 -38.39779 -36.97215 -35.28529 -34.09590 -33.33729 -32.20337 -30.87008 -28.64148 -27.70665 -26.01399 -24.81107 -23.26317 -22.44457 -22.35676 -21.13490 -19.19124 -18.65793 -18.23875 -17.18387 -16.98032 -16.57663 -16.51272 -16.32577 -16.17210 -15.50337 -15.25911 -14.98173 -14.36088 -14.27684 -14.11983 -14.01989 -13.77480 -13.58845 -13.39477 -13.15854 -13.11379 -12.77165 -12.73342 -12.55613 -12.39164 -12.22107 -12.07571 -11.74011 -11.68393 -11.56481 -11.24335 -10.84545 -10.55689 -10.20662 -9.75177 -9.08656 -8.19645 -6.31233 0.38709 0.48361 1.41911 1.42926 1.43327 1.53677 1.56085 2.41353 2.57279 2.82308 3.14304 3.48071 3.68874 3.84602 3.88211 3.94664 4.13294 4.19486 4.22082 4.34785 4.42827 4.52986 4.60989 4.63762 4.71099 4.76183 4.77120 4.92528 4.93928 4.98503 5.09786 5.16428 5.30351 5.34494 5.41601 5.51669 5.53569 5.61976 5.70052 5.83982 5.87354 6.21304 6.34453 6.50861 6.86629 7.11458 7.38562 8.92462 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037101 B = 0.002312 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.525168 B =12109.330561 C =12540.863095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.139 4.139 3 C -0.088 4.088 4 C -0.157 4.157 5 C -0.089 4.089 6 C -0.213 4.213 7 C 0.102 3.898 8 O -0.311 6.311 9 C 0.072 3.928 10 H 0.125 0.875 11 C -0.169 4.169 12 C 0.509 3.491 13 O -0.575 6.575 14 N -0.704 5.704 15 C 0.130 3.870 16 C -0.100 4.100 17 C 0.022 3.978 18 C -0.539 4.539 19 H 0.069 0.931 20 C -0.005 4.005 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.259 1.259 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.419 0.581 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.071 0.929 41 H -0.009 1.009 42 H -0.008 1.008 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.084 25.724 -10.020 30.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.140 4.140 3 C -0.106 4.106 4 C -0.175 4.175 5 C -0.107 4.107 6 C -0.231 4.231 7 C 0.057 3.943 8 O -0.225 6.225 9 C 0.012 3.988 10 H 0.143 0.857 11 C -0.227 4.227 12 C 0.295 3.705 13 O -0.454 6.454 14 N -0.358 5.358 15 C 0.006 3.994 16 C -0.138 4.138 17 C -0.016 4.016 18 C -0.577 4.577 19 H 0.087 0.913 20 C -0.203 4.203 21 N -0.576 5.576 22 Si 0.792 3.208 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.183 1.183 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.169 0.831 32 H 0.166 0.834 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.257 0.743 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.898 25.705 -9.831 29.600 hybrid contribution 0.171 -1.283 0.404 1.356 sum 11.070 24.422 -9.428 28.422 Atomic orbital electron populations 1.20589 0.90717 1.02684 1.02131 1.19592 0.96978 0.91085 1.06337 1.21189 0.94883 0.96733 0.97800 1.21434 0.94008 0.99325 1.02717 1.21319 1.01231 0.91364 0.96738 1.21551 0.92066 1.01103 1.08420 1.19211 0.91613 0.85157 0.98292 1.86170 1.36033 1.12283 1.88013 1.22297 0.93339 0.82663 1.00490 0.85731 1.22347 1.02520 1.04534 0.93274 1.20769 0.88049 0.83875 0.77792 1.90721 1.18495 1.81883 1.54287 1.45794 1.14291 1.11620 1.64045 1.21284 0.93917 0.86741 0.97448 1.21595 0.98154 0.92577 1.01495 1.18959 0.94886 0.93232 0.94512 1.21680 0.96395 0.98080 1.41567 0.91318 1.26047 0.96239 1.02640 0.95367 1.70120 1.12987 1.29876 1.44653 0.85405 0.78549 0.77904 0.78922 1.19851 1.21192 1.18272 0.91905 0.89704 0.93138 0.83446 0.83368 0.83102 0.83418 0.87648 0.92304 0.88933 0.74293 0.93266 0.93120 0.90931 0.91040 0.99082 0.99001 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.18 9.79 71.23 0.70 -1.48 16 2 C -0.14 -2.95 5.89 -19.77 -0.12 -3.07 16 3 C -0.09 -1.38 9.70 22.25 0.22 -1.17 16 4 C -0.16 -2.04 10.04 22.28 0.22 -1.81 16 5 C -0.09 -1.16 10.04 22.25 0.22 -0.94 16 6 C -0.21 -3.50 8.24 22.36 0.18 -3.31 16 7 C 0.10 2.30 6.57 22.51 0.15 2.45 16 8 O -0.31 -8.40 8.38 -73.49 -0.62 -9.02 16 9 C 0.07 1.51 2.64 29.85 0.08 1.59 16 10 H 0.13 1.89 6.32 -2.39 -0.02 1.87 16 11 C -0.17 -2.56 9.12 71.98 0.66 -1.90 16 12 C 0.51 15.10 7.18 87.66 0.63 15.73 16 13 O -0.58 -23.50 16.51 15.96 0.26 -23.24 16 14 N -0.70 -18.41 5.51 -463.06 -2.55 -20.96 16 15 C 0.13 4.50 5.67 86.38 0.49 4.99 16 16 C -0.10 -3.71 5.27 30.59 0.16 -3.55 16 17 C 0.02 1.12 4.97 29.85 0.15 1.27 16 18 C -0.54 -29.66 9.11 25.60 0.23 -29.42 16 19 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 20 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 21 N -0.94 -57.11 13.29 21.44 0.28 -56.83 16 22 Si 0.97 43.40 29.54 68.60 2.03 45.42 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.31 8.09 -2.38 -0.02 1.29 16 28 H 0.05 1.26 7.53 -2.38 -0.02 1.25 16 29 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 31 H 0.15 1.11 8.06 -2.91 -0.02 1.08 16 32 H 0.15 1.73 5.43 -2.91 -0.02 1.71 16 33 H 0.10 1.06 7.91 -2.39 -0.02 1.04 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.10 6.90 -2.39 -0.02 1.08 16 36 H 0.42 7.46 8.24 -92.70 -0.76 6.70 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 41 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 Total: -1.00 -76.05 360.02 4.08 -71.97 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.23 Total: 13.13 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 4.44 Total: -20.48 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -2.27 Total: -77.79 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -0.35 Total: -32.26 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -76.05 4.08 -71.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180526357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.712 kcal (2) G-P(sol) polarization free energy of solvation -76.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds