Wall clock time and date at job start Tue Mar 31 2020 06:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 117.00049 * 2 1 4 4 C 1.38748 * 120.05538 * 359.73131 * 3 2 1 5 5 C 1.38123 * 119.94318 * 180.25154 * 4 3 2 6 6 C 1.38282 * 120.05864 * 0.04105 * 5 4 3 7 7 C 1.38248 * 120.11148 * 359.95155 * 6 5 4 8 8 C 1.50697 * 119.97290 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47167 * 264.97792 * 8 7 6 10 10 O 1.21285 * 120.00296 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00136 * 179.97438 * 9 8 7 12 12 C 1.46495 * 119.99978 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.47318 * 180.02562 * 12 11 9 14 14 C 1.52993 * 109.47223 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.46912 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99657 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99679 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00403 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99770 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47112 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47106 * 119.99920 * 19 17 15 22 22 H 1.48497 * 109.47653 * 240.00389 * 19 17 15 23 23 C 1.38165 * 120.05352 * 0.02944 * 7 6 5 24 24 C 1.50705 * 120.02914 * 179.97438 * 23 7 6 25 25 H 1.09002 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47202 * 299.99846 * 1 2 3 27 27 H 1.08999 * 109.47281 * 59.99918 * 1 2 3 28 28 H 1.07998 * 120.02904 * 0.24228 * 4 3 2 29 29 H 1.08004 * 119.96722 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.94449 * 179.97438 * 6 5 4 31 31 H 1.08992 * 109.47086 * 24.98273 * 8 7 6 32 32 H 1.09005 * 109.46757 * 144.98120 * 8 7 6 33 33 H 0.96993 * 119.99807 * 0.02562 * 11 9 8 34 34 H 1.09000 * 109.47277 * 299.99861 * 12 11 9 35 35 H 1.08998 * 109.47483 * 60.00178 * 12 11 9 36 36 H 1.09000 * 109.46724 * 300.00066 * 13 12 11 37 37 H 1.08998 * 109.46808 * 59.99631 * 13 12 11 38 38 H 1.09000 * 109.47227 * 299.99638 * 14 13 12 39 39 H 1.08998 * 109.47628 * 60.00013 * 14 13 12 40 40 H 0.97002 * 119.99913 * 180.02562 * 18 17 15 41 41 H 1.08993 * 109.46778 * 270.02066 * 24 23 7 42 42 H 1.08998 * 109.46911 * 30.02242 * 24 23 7 43 43 H 1.09005 * 109.46956 * 150.01896 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0056 5 6 1.9209 3.6047 -0.0109 6 6 3.3019 3.6758 -0.0114 7 6 4.0560 2.5171 -0.0056 8 6 5.5608 2.5981 -0.0056 9 6 6.0695 2.4942 -1.4203 10 8 5.2871 2.3673 -2.3383 11 7 7.3938 2.5433 -1.6656 12 6 7.8883 2.4428 -3.0409 13 6 9.4161 2.5250 -3.0409 14 6 9.9325 2.4207 -4.4773 15 6 11.4373 2.5023 -4.4774 16 1 11.9718 2.6166 -3.5460 17 6 12.1315 2.4299 -5.6664 18 7 11.4806 2.2901 -6.8005 19 14 13.9968 2.5317 -5.6665 20 1 14.4841 2.6871 -4.2723 21 1 14.5604 1.2886 -6.2517 22 1 14.4288 3.6997 -6.4753 23 6 3.4311 1.2848 0.0000 24 6 4.2537 0.0221 0.0057 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2128 2.3203 -0.0061 29 1 1.3340 4.5113 -0.0157 30 1 3.7922 4.6380 -0.0159 31 1 5.8733 3.5499 0.4239 32 1 5.9687 1.7801 0.5882 33 1 8.0195 2.6452 -0.9315 34 1 7.5760 1.4910 -3.4707 35 1 7.4801 3.2608 -3.6345 36 1 9.7288 3.4766 -2.6110 37 1 9.8240 1.7068 -2.4475 38 1 9.6198 1.4693 -4.9076 39 1 9.5246 3.2392 -5.0705 40 1 11.9691 2.2388 -7.6370 41 1 4.4522 -0.2868 -1.0205 42 1 5.1976 0.2057 0.5190 43 1 3.7062 -0.7659 0.5229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186476029.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:52 Heat of formation + Delta-G solvation = -72.977144 kcal Electronic energy + Delta-G solvation = -22230.232753 eV Core-core repulsion = 18853.912266 eV Total energy + Delta-G solvation = -3376.320487 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.61696 -39.40593 -37.64838 -35.36318 -33.50463 -33.27895 -31.82202 -31.05600 -28.24652 -27.84988 -26.79879 -26.03347 -23.14219 -21.93926 -21.27465 -20.67458 -19.76341 -17.85344 -16.86220 -16.75299 -16.40710 -15.95295 -15.84235 -15.39255 -15.30350 -14.48864 -14.43117 -13.97505 -13.80194 -13.69595 -13.21913 -13.09551 -12.56806 -12.33084 -12.26410 -12.18387 -11.98511 -11.81918 -11.54943 -11.41301 -11.25351 -10.92085 -10.87533 -10.72838 -10.56778 -9.86995 -9.86448 -9.38959 -9.11028 -8.75988 -8.74204 -8.37609 -8.22881 -6.01902 -4.05001 1.15404 1.33590 2.82563 3.05652 3.29871 3.35381 3.37687 3.41167 3.75215 4.44285 4.47457 4.60132 4.78714 4.81555 4.87499 4.96767 4.99030 5.09007 5.17194 5.25597 5.30465 5.33917 5.54192 5.56617 5.66914 5.73829 5.77250 5.79487 6.14756 6.17725 6.19936 6.30635 6.46250 6.51228 6.60956 6.62978 6.85121 7.01343 7.22733 7.63979 7.74412 7.76381 7.97055 8.37522 8.45015 9.02019 9.59269 11.09420 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035615 B = 0.002325 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.004470 B =12038.260468 C =12250.066924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.124 3.876 4 C -0.207 4.207 5 C -0.087 4.087 6 C -0.139 4.139 7 C -0.028 4.028 8 C -0.108 4.108 9 C 0.509 3.491 10 O -0.533 6.533 11 N -0.728 5.728 12 C 0.117 3.883 13 C -0.120 4.120 14 C 0.023 3.977 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.097 4.097 24 C -0.109 4.109 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.398 0.602 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.260 0.740 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.513 -0.737 18.856 27.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.079 3.921 4 C -0.225 4.225 5 C -0.105 4.105 6 C -0.157 4.157 7 C -0.028 4.028 8 C -0.147 4.147 9 C 0.295 3.705 10 O -0.410 6.410 11 N -0.379 5.379 12 C -0.006 4.006 13 C -0.158 4.158 14 C -0.015 4.015 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.098 4.098 24 C -0.165 4.165 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.232 0.768 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.968 -1.048 17.977 27.639 hybrid contribution 1.032 0.346 0.128 1.096 sum -19.936 -0.702 18.104 26.939 Atomic orbital electron populations 1.23031 0.78662 1.03791 1.01226 1.86057 1.21071 1.26901 1.88830 1.18723 0.91640 0.84154 0.97588 1.21159 0.99746 0.92430 1.09202 1.20821 0.94444 0.96896 0.98361 1.20882 0.93818 0.97729 1.03308 1.18935 0.93735 0.92127 0.98015 1.20747 0.92877 1.05258 0.95847 1.20388 0.82563 0.76912 0.90680 1.90732 1.55599 1.48474 1.46174 1.46211 1.06717 1.74379 1.10632 1.21628 0.96059 1.01817 0.81071 1.21882 0.90830 1.00830 1.02284 1.19038 0.95752 0.97613 0.89076 1.21242 0.91785 1.50120 0.92819 0.92583 1.25040 0.98526 0.95304 0.95679 1.69979 1.35410 1.50161 0.97727 0.86526 0.85723 0.77627 0.78042 1.19756 1.21003 1.21006 1.18994 0.90570 0.95625 1.04587 1.20678 0.98621 0.94408 1.02798 0.88344 0.92829 0.92705 0.85702 0.85870 0.85954 0.87865 0.87605 0.76848 0.91852 0.91867 0.92747 0.92727 0.96281 0.96293 0.92980 0.90899 0.91651 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.53 9.54 -19.43 -0.19 -3.72 16 3 C 0.12 1.51 6.66 -39.22 -0.26 1.25 16 4 C -0.21 -2.19 9.04 -39.44 -0.36 -2.54 16 5 C -0.09 -0.90 10.04 -39.61 -0.40 -1.30 16 6 C -0.14 -1.56 9.68 -39.56 -0.38 -1.95 16 7 C -0.03 -0.33 4.37 -104.65 -0.46 -0.79 16 8 C -0.11 -1.11 5.33 -29.04 -0.15 -1.27 16 9 C 0.51 7.40 7.82 -10.99 -0.09 7.31 16 10 O -0.53 -10.17 16.03 5.55 0.09 -10.08 16 11 N -0.73 -10.16 5.56 -60.29 -0.33 -10.49 16 12 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 13 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.10 -1.23 5.89 -104.47 -0.62 -1.85 16 24 C -0.11 -1.24 9.38 36.01 0.34 -0.91 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.30 7.67 -51.93 -0.40 -0.10 16 27 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 28 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 29 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 31 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 32 H 0.11 0.87 6.16 -51.93 -0.32 0.55 16 33 H 0.40 4.29 8.47 -40.82 -0.35 3.95 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.63 6.03 -51.93 -0.31 0.31 16 43 H 0.07 0.73 7.54 -51.93 -0.39 0.34 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -34.51 358.96 -8.09 -42.59 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.68 Total: 0.22 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -2.10 Total: -14.23 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.40 Total: -36.67 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.10 Total: -13.80 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.51 -8.09 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186476029.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.386 kcal (2) G-P(sol) polarization free energy of solvation -34.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds