Wall clock time and date at job start Tue Mar 31 2020 06:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 117.00049 * 2 1 4 4 C 1.38748 * 120.05538 * 359.73131 * 3 2 1 5 5 C 1.38123 * 119.94318 * 180.25154 * 4 3 2 6 6 C 1.38282 * 120.05864 * 0.04105 * 5 4 3 7 7 C 1.38248 * 120.11148 * 359.95155 * 6 5 4 8 8 C 1.50697 * 119.97290 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47167 * 264.97792 * 8 7 6 10 10 O 1.21285 * 120.00296 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00136 * 179.97438 * 9 8 7 12 12 C 1.46495 * 119.99978 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.47318 * 180.02562 * 12 11 9 14 14 C 1.52993 * 109.47223 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.46912 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99657 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99679 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00403 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99770 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47112 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47106 * 119.99920 * 19 17 15 22 22 H 1.48497 * 109.47653 * 240.00389 * 19 17 15 23 23 C 1.38165 * 120.05352 * 0.02944 * 7 6 5 24 24 C 1.50705 * 120.02914 * 179.97438 * 23 7 6 25 25 H 1.09002 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47202 * 299.99846 * 1 2 3 27 27 H 1.08999 * 109.47281 * 59.99918 * 1 2 3 28 28 H 1.07998 * 120.02904 * 0.24228 * 4 3 2 29 29 H 1.08004 * 119.96722 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.94449 * 179.97438 * 6 5 4 31 31 H 1.08992 * 109.47086 * 24.98273 * 8 7 6 32 32 H 1.09005 * 109.46757 * 144.98120 * 8 7 6 33 33 H 0.96993 * 119.99807 * 0.02562 * 11 9 8 34 34 H 1.09000 * 109.47277 * 299.99861 * 12 11 9 35 35 H 1.08998 * 109.47483 * 60.00178 * 12 11 9 36 36 H 1.09000 * 109.46724 * 300.00066 * 13 12 11 37 37 H 1.08998 * 109.46808 * 59.99631 * 13 12 11 38 38 H 1.09000 * 109.47227 * 299.99638 * 14 13 12 39 39 H 1.08998 * 109.47628 * 60.00013 * 14 13 12 40 40 H 0.97002 * 119.99913 * 180.02562 * 18 17 15 41 41 H 1.08993 * 109.46778 * 270.02066 * 24 23 7 42 42 H 1.08998 * 109.46911 * 30.02242 * 24 23 7 43 43 H 1.09005 * 109.46956 * 150.01896 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0056 5 6 1.9209 3.6047 -0.0109 6 6 3.3019 3.6758 -0.0114 7 6 4.0560 2.5171 -0.0056 8 6 5.5608 2.5981 -0.0056 9 6 6.0695 2.4942 -1.4203 10 8 5.2871 2.3673 -2.3383 11 7 7.3938 2.5433 -1.6656 12 6 7.8883 2.4428 -3.0409 13 6 9.4161 2.5250 -3.0409 14 6 9.9325 2.4207 -4.4773 15 6 11.4373 2.5023 -4.4774 16 1 11.9718 2.6166 -3.5460 17 6 12.1315 2.4299 -5.6664 18 7 11.4806 2.2901 -6.8005 19 14 13.9968 2.5317 -5.6665 20 1 14.4841 2.6871 -4.2723 21 1 14.5604 1.2886 -6.2517 22 1 14.4288 3.6997 -6.4753 23 6 3.4311 1.2848 0.0000 24 6 4.2537 0.0221 0.0057 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2128 2.3203 -0.0061 29 1 1.3340 4.5113 -0.0157 30 1 3.7922 4.6380 -0.0159 31 1 5.8733 3.5499 0.4239 32 1 5.9687 1.7801 0.5882 33 1 8.0195 2.6452 -0.9315 34 1 7.5760 1.4910 -3.4707 35 1 7.4801 3.2608 -3.6345 36 1 9.7288 3.4766 -2.6110 37 1 9.8240 1.7068 -2.4475 38 1 9.6198 1.4693 -4.9076 39 1 9.5246 3.2392 -5.0705 40 1 11.9691 2.2388 -7.6370 41 1 4.4522 -0.2868 -1.0205 42 1 5.1976 0.2057 0.5190 43 1 3.7062 -0.7659 0.5229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186476029.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:51 Heat of formation + Delta-G solvation = -95.148481 kcal Electronic energy + Delta-G solvation = -22231.194174 eV Core-core repulsion = 18853.912266 eV Total energy + Delta-G solvation = -3377.281908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.47281 -40.49563 -38.48692 -36.90360 -35.16605 -34.34217 -33.13502 -32.36652 -29.40666 -28.49284 -28.11890 -27.13785 -24.90222 -22.76805 -22.29337 -22.25878 -20.95603 -18.70968 -18.47224 -17.94289 -17.56947 -16.79060 -16.70529 -16.64862 -16.50055 -16.39417 -15.57242 -14.94461 -14.92055 -14.63330 -14.32484 -14.10159 -13.96321 -13.72743 -13.59597 -13.33211 -13.03195 -12.88091 -12.77822 -12.56537 -12.54181 -12.34020 -12.20340 -11.96034 -11.66793 -11.64506 -11.56939 -11.21976 -10.85356 -10.56340 -10.05404 -9.61405 -9.04548 -8.19550 -6.31136 0.32275 0.50839 1.42037 1.42176 1.55518 1.69614 2.23167 2.40345 2.43926 2.84880 3.14267 3.65579 3.85959 3.99987 4.06270 4.17941 4.20254 4.23422 4.28124 4.34175 4.38180 4.50510 4.54177 4.56602 4.71748 4.76222 4.78651 4.83143 4.89346 4.95604 5.03678 5.18068 5.30413 5.40240 5.46942 5.50641 5.54885 5.63981 5.71022 5.84506 5.86313 6.22235 6.47632 6.64621 6.87035 7.33524 7.38713 8.92843 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035615 B = 0.002325 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.004470 B =12038.260468 C =12250.066924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.106 3.894 4 C -0.212 4.212 5 C -0.092 4.092 6 C -0.153 4.153 7 C -0.044 4.044 8 C -0.097 4.097 9 C 0.509 3.491 10 O -0.584 6.584 11 N -0.715 5.715 12 C 0.131 3.869 13 C -0.101 4.101 14 C 0.022 3.978 15 C -0.538 4.538 16 H 0.068 0.932 17 C -0.006 4.006 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.257 1.257 21 H -0.281 1.281 22 H -0.280 1.280 23 C -0.125 4.125 24 C -0.104 4.104 25 H 0.117 0.883 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.417 0.583 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.069 0.931 38 H -0.010 1.010 39 H -0.009 1.009 40 H 0.263 0.737 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.040 0.030 21.290 29.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.061 3.939 4 C -0.231 4.231 5 C -0.110 4.110 6 C -0.171 4.171 7 C -0.044 4.044 8 C -0.136 4.136 9 C 0.297 3.703 10 O -0.464 6.464 11 N -0.368 5.368 12 C 0.006 3.994 13 C -0.138 4.138 14 C -0.016 4.016 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.577 5.577 19 Si 0.793 3.207 20 H -0.180 1.180 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.125 4.125 24 C -0.160 4.160 25 H 0.135 0.865 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.165 0.835 29 H 0.167 0.833 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.255 0.745 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.102 0.898 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.485 -0.278 20.466 28.958 hybrid contribution 0.766 0.094 -0.648 1.008 sum -19.719 -0.184 19.818 27.957 Atomic orbital electron populations 1.23309 0.76698 1.05402 1.02087 1.86025 1.23218 1.26865 1.88831 1.18998 0.91971 0.84997 0.97915 1.21480 1.00969 0.92098 1.08504 1.21207 0.94591 0.97840 0.97347 1.21215 0.94468 0.98237 1.03172 1.19194 0.94702 0.92238 0.98305 1.20779 0.91921 1.08072 0.92844 1.21141 0.81901 0.75253 0.92027 1.90717 1.56799 1.50669 1.48191 1.45969 1.07284 1.74034 1.09514 1.21177 0.94863 1.00205 0.83118 1.21587 0.91692 1.02193 0.98373 1.18962 0.95245 0.94924 0.92455 1.21717 0.92998 1.49561 0.93370 0.91385 1.26055 1.04138 0.94852 0.95282 1.70127 1.37678 1.51351 0.98531 0.85348 0.78990 0.77601 0.78788 1.18048 1.20638 1.20611 1.19293 0.91315 0.96252 1.05689 1.20625 0.99528 0.94386 1.01467 0.86500 0.91353 0.92351 0.83500 0.83339 0.84346 0.84513 0.85110 0.74534 0.93711 0.93590 0.91188 0.91242 0.99150 0.99106 0.92843 0.93330 0.89842 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.45 9.54 -92.45 -0.88 -8.33 16 3 C 0.11 2.55 6.66 22.51 0.15 2.70 16 4 C -0.21 -4.23 9.04 22.36 0.20 -4.03 16 5 C -0.09 -1.75 10.04 22.25 0.22 -1.53 16 6 C -0.15 -3.19 9.68 22.28 0.22 -2.97 16 7 C -0.04 -1.01 4.37 -19.88 -0.09 -1.09 16 8 C -0.10 -1.78 5.33 29.10 0.16 -1.62 16 9 C 0.51 14.25 7.82 87.66 0.69 14.94 16 10 O -0.58 -22.59 16.03 -3.05 -0.05 -22.64 16 11 N -0.72 -18.88 5.56 -463.06 -2.57 -21.45 16 12 C 0.13 4.64 5.67 86.38 0.49 5.13 16 13 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 14 C 0.02 1.14 4.97 29.85 0.15 1.29 16 15 C -0.54 -30.07 9.11 25.60 0.23 -29.83 16 16 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 17 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 18 N -0.94 -57.61 13.29 21.45 0.28 -57.33 16 19 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 C -0.12 -3.13 5.89 -19.77 -0.12 -3.25 16 24 C -0.10 -2.37 9.38 71.24 0.67 -1.71 16 25 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 0.65 7.67 -2.39 -0.02 0.64 16 27 H 0.06 0.69 7.65 -2.39 -0.02 0.67 16 28 H 0.15 2.10 6.30 -2.91 -0.02 2.08 16 29 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 30 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.14 1.60 8.05 -2.39 -0.02 1.58 16 32 H 0.13 1.73 6.16 -2.38 -0.01 1.72 16 33 H 0.42 7.78 8.47 -92.71 -0.79 6.99 16 34 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.50 6.03 -2.39 -0.01 1.48 16 43 H 0.07 1.53 7.54 -2.38 -0.02 1.51 16 Total: -1.00 -77.12 358.96 3.73 -73.39 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.22 Total: 14.65 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 4.70 Total: -24.17 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -2.29 Total: -78.78 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.93 Total: -30.97 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -77.12 3.73 -73.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186476029.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.757 kcal (2) G-P(sol) polarization free energy of solvation -77.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds