Wall clock time and date at job start Tue Mar 31 2020 06:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37681 * 119.95142 * 2 1 4 4 C 1.39795 * 119.90366 * 180.02562 * 3 2 1 5 5 C 1.47494 * 120.09464 * 179.97438 * 4 3 2 6 6 O 1.21624 * 120.00513 * 214.21294 * 5 4 3 7 7 N 1.34778 * 119.99990 * 34.21576 * 5 4 3 8 8 C 1.46502 * 119.99774 * 6.30561 * 7 5 4 9 9 C 1.36905 * 120.00487 * 186.30993 * 7 5 4 10 10 H 1.08001 * 119.99782 * 336.03074 * 9 7 5 11 11 C 1.39015 * 120.00259 * 156.03373 * 9 7 5 12 12 N 1.31387 * 120.00385 * 356.57955 * 11 9 7 13 13 Si 1.86804 * 120.00012 * 176.57712 * 11 9 7 14 14 H 1.48501 * 109.46980 * 90.00021 * 13 11 9 15 15 H 1.48504 * 109.47020 * 210.00001 * 13 11 9 16 16 H 1.48502 * 109.47119 * 329.99829 * 13 11 9 17 17 C 1.39792 * 119.81572 * 0.02562 * 4 3 2 18 18 C 1.37689 * 119.90400 * 0.02562 * 17 4 3 19 19 C 1.50699 * 119.95493 * 180.02562 * 18 17 4 20 20 C 1.39009 * 120.09260 * 359.97337 * 18 17 4 21 21 O 1.35721 * 119.90881 * 179.97438 * 20 18 17 22 22 C 1.42895 * 116.99943 * 263.35671 * 21 20 18 23 23 C 1.53001 * 109.47668 * 96.17609 * 22 21 20 24 24 C 1.53002 * 109.46799 * 216.17475 * 22 21 20 25 25 H 1.08996 * 109.47574 * 89.99364 * 1 2 3 26 26 H 1.09003 * 109.46984 * 209.99680 * 1 2 3 27 27 H 1.09001 * 109.46999 * 329.98890 * 1 2 3 28 28 H 1.08003 * 120.04632 * 359.73388 * 3 2 1 29 29 H 1.09001 * 109.47434 * 25.65673 * 8 7 5 30 30 H 1.09003 * 109.47147 * 145.65421 * 8 7 5 31 31 H 1.09002 * 109.47376 * 265.65682 * 8 7 5 32 32 H 0.96990 * 120.00314 * 180.02562 * 12 11 9 33 33 H 1.07998 * 120.05311 * 180.02562 * 17 4 3 34 34 H 1.09002 * 109.47059 * 268.32744 * 19 18 17 35 35 H 1.09004 * 109.47247 * 28.32292 * 19 18 17 36 36 H 1.08999 * 109.47498 * 148.32373 * 19 18 17 37 37 H 1.09002 * 109.47362 * 336.17167 * 22 21 20 38 38 H 1.08999 * 109.46864 * 61.79206 * 23 22 21 39 39 H 1.08998 * 109.47420 * 181.79185 * 23 22 21 40 40 H 1.09003 * 109.46909 * 301.79258 * 23 22 21 41 41 H 1.08997 * 109.47202 * 59.99961 * 24 22 21 42 42 H 1.09003 * 109.47410 * 179.97438 * 24 22 21 43 43 H 1.08994 * 109.47197 * 300.00054 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1929 0.0000 4 6 3.5924 1.1918 -0.0005 5 6 4.3330 2.4673 -0.0011 6 8 5.3914 2.5557 -0.5938 7 7 3.8370 3.5349 0.6552 8 6 2.6360 3.3932 1.4822 9 6 4.4553 4.7517 0.5490 10 1 5.5021 4.8046 0.2888 11 6 3.7357 5.9192 0.7762 12 7 2.4473 5.8587 1.0267 13 14 4.6005 7.5743 0.7255 14 1 4.5587 8.1124 -0.6580 15 1 3.9163 8.5187 1.6449 16 1 6.0139 7.4074 1.1492 17 6 4.2864 -0.0217 -0.0016 18 6 3.5912 -1.2101 -0.0027 19 6 4.3382 -2.5189 -0.0033 20 6 2.2011 -1.2044 -0.0021 21 8 1.5195 -2.3781 -0.0037 22 6 1.0659 -2.8631 -1.2689 23 6 2.0733 -3.8751 -1.8184 24 6 -0.2953 -3.5404 -1.0972 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5140 28 1 1.6544 2.1282 -0.0043 29 1 2.5473 2.3607 1.8202 30 1 2.7100 4.0533 2.3464 31 1 1.7571 3.6600 0.8953 32 1 1.9452 6.6733 1.1848 33 1 5.3664 -0.0271 -0.0016 34 1 4.4927 -2.8487 -1.0307 35 1 5.3038 -2.3864 0.4848 36 1 3.7586 -3.2684 0.5356 37 1 0.9717 -2.0297 -1.9651 38 1 2.1437 -4.7237 -1.1379 39 1 1.7433 -4.2212 -2.7978 40 1 3.0506 -3.4013 -1.9107 41 1 -1.0130 -2.8195 -0.7058 42 1 -0.6416 -3.9100 -2.0624 43 1 -0.2011 -4.3738 -0.4011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197228723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:04 Heat of formation + Delta-G solvation = -47.114392 kcal Electronic energy + Delta-G solvation = -23842.890351 eV Core-core repulsion = 20467.691357 eV Total energy + Delta-G solvation = -3375.198994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26247 -38.67898 -36.87809 -34.78488 -33.43739 -33.12240 -31.74153 -30.55962 -27.56195 -27.04393 -26.54975 -25.78604 -24.83310 -22.63063 -21.27403 -20.66663 -18.93708 -17.76550 -17.00555 -16.32048 -15.70587 -15.51339 -14.88631 -14.51515 -14.07451 -13.91596 -13.74614 -13.40381 -13.34055 -13.18190 -12.89084 -12.70589 -12.64508 -12.43542 -12.32719 -12.04702 -11.91770 -11.71339 -11.45757 -11.31226 -11.18401 -11.01559 -10.95035 -10.78948 -10.66219 -10.37383 -10.30070 -9.70945 -9.04912 -8.53672 -8.28041 -8.02006 -7.73292 -6.36560 -3.92787 1.27209 1.67822 3.13703 3.22288 3.27938 3.39103 3.89916 4.09182 4.35808 4.77064 4.82335 4.87190 4.97666 5.06193 5.06869 5.16909 5.38731 5.40055 5.47744 5.55519 5.57025 5.61657 5.68192 5.74950 5.77838 5.82756 5.88745 5.96087 6.00440 6.01978 6.12829 6.25291 6.38227 6.46054 6.69027 6.77478 6.89334 6.92058 7.03808 7.24094 7.49963 7.76198 8.09420 8.44595 9.12957 9.35417 9.93603 10.65092 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.003954 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.900495 B = 7079.258924 C = 7768.027658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.113 4.113 3 C -0.090 4.090 4 C -0.092 4.092 5 C 0.477 3.523 6 O -0.589 6.589 7 N -0.433 5.433 8 C 0.109 3.891 9 C -0.302 4.302 10 H 0.101 0.899 11 C 0.031 3.969 12 N -0.882 5.882 13 Si 0.932 3.068 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.269 1.269 17 C -0.073 4.073 18 C -0.109 4.109 19 C -0.107 4.107 20 C 0.092 3.908 21 O -0.326 6.326 22 C 0.086 3.914 23 C -0.178 4.178 24 C -0.151 4.151 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.269 0.731 33 H 0.130 0.870 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.758 -15.929 -1.818 17.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.114 4.114 3 C -0.109 4.109 4 C -0.095 4.095 5 C 0.266 3.734 6 O -0.476 6.476 7 N -0.150 5.150 8 C -0.034 4.034 9 C -0.430 4.430 10 H 0.119 0.881 11 C -0.172 4.172 12 N -0.521 5.521 13 Si 0.758 3.242 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.193 1.193 17 C -0.092 4.092 18 C -0.110 4.110 19 C -0.164 4.164 20 C 0.048 3.952 21 O -0.244 6.244 22 C 0.031 3.969 23 C -0.236 4.236 24 C -0.209 4.209 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.158 0.842 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.456 -15.805 -1.875 17.176 hybrid contribution 0.204 1.065 -0.139 1.093 sum -6.251 -14.740 -2.014 16.137 Atomic orbital electron populations 1.20687 0.90938 1.03035 1.01888 1.20057 0.96439 0.92300 1.02572 1.21553 0.93417 0.98006 0.97937 1.20330 0.93589 0.94803 1.00801 1.17918 0.87543 0.83980 0.83957 1.90608 1.23784 1.84500 1.48662 1.43503 1.24770 1.07826 1.38916 1.21848 0.88336 0.97238 0.95985 1.19732 0.96083 0.81401 1.45820 0.88114 1.25425 0.95387 0.99968 0.96463 1.69977 1.06371 1.29157 1.46614 0.85836 0.79340 0.80728 0.78272 1.20193 1.20784 1.19320 1.20975 1.00118 0.90071 0.98027 1.19947 0.92650 0.95742 1.02614 1.20757 0.99557 0.94193 1.01854 1.18370 0.89255 0.84561 1.02968 1.85945 1.72547 1.36195 1.29664 1.22294 0.93884 0.96007 0.84752 1.22450 1.00305 0.99903 1.00909 1.21928 0.95400 1.01207 1.02322 0.91804 0.91220 0.91203 0.84171 0.94914 0.91163 0.91987 0.92073 0.85208 0.91533 0.91703 0.91092 0.91911 0.91804 0.91771 0.91518 0.91838 0.91234 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.57 36.01 0.34 -1.04 16 2 C -0.11 -1.81 5.89 -104.54 -0.62 -2.42 16 3 C -0.09 -1.68 7.24 -39.20 -0.28 -1.96 16 4 C -0.09 -1.94 5.18 -104.96 -0.54 -2.48 16 5 C 0.48 12.31 7.31 -12.49 -0.09 12.22 16 6 O -0.59 -17.05 16.49 5.26 0.09 -16.96 16 7 N -0.43 -11.41 3.02 -123.39 -0.37 -11.79 16 8 C 0.11 2.50 7.04 59.85 0.42 2.92 16 9 C -0.30 -8.50 9.31 -15.00 -0.14 -8.64 16 10 H 0.10 2.95 7.36 -52.49 -0.39 2.57 16 11 C 0.03 0.81 5.27 -17.45 -0.09 0.72 16 12 N -0.88 -23.08 10.30 55.50 0.57 -22.51 16 13 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 17 C -0.07 -1.36 9.24 -39.20 -0.36 -1.72 16 18 C -0.11 -1.73 5.89 -104.54 -0.62 -2.35 16 19 C -0.11 -1.34 8.66 36.01 0.31 -1.03 16 20 C 0.09 1.43 5.50 -39.01 -0.21 1.22 16 21 O -0.33 -4.41 7.83 -18.87 -0.15 -4.56 16 22 C 0.09 0.93 3.19 -26.73 -0.09 0.84 16 23 C -0.18 -1.66 9.17 37.16 0.34 -1.32 16 24 C -0.15 -1.28 9.56 37.16 0.36 -0.92 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.83 7.43 -51.93 -0.39 0.44 16 27 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 28 H 0.14 2.66 5.43 -52.48 -0.29 2.38 16 29 H 0.03 0.66 5.79 -51.93 -0.30 0.36 16 30 H 0.07 1.69 7.08 -51.93 -0.37 1.32 16 31 H 0.06 1.43 6.27 -51.93 -0.33 1.10 16 32 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.13 2.41 7.98 -52.49 -0.42 1.99 16 34 H 0.07 0.75 6.30 -51.93 -0.33 0.42 16 35 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 36 H 0.07 0.84 7.58 -51.93 -0.39 0.45 16 37 H 0.06 0.71 7.84 -51.93 -0.41 0.31 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.68 5.40 -51.93 -0.28 0.40 16 41 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -30.94 344.21 -7.35 -38.29 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.38 Total: 2.64 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -1.27 Total: -5.97 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.20 Total: -34.30 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.06 Total: -21.52 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.94 -7.35 -38.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197228723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.824 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds