Wall clock time and date at job start Tue Mar 31 2020 06:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37681 * 119.95142 * 2 1 4 4 C 1.39795 * 119.90366 * 180.02562 * 3 2 1 5 5 C 1.47494 * 120.09464 * 179.97438 * 4 3 2 6 6 O 1.21624 * 120.00513 * 214.21294 * 5 4 3 7 7 N 1.34778 * 119.99990 * 34.21576 * 5 4 3 8 8 C 1.46502 * 119.99774 * 6.30561 * 7 5 4 9 9 C 1.36905 * 120.00487 * 186.30993 * 7 5 4 10 10 H 1.08001 * 119.99782 * 336.03074 * 9 7 5 11 11 C 1.39015 * 120.00259 * 156.03373 * 9 7 5 12 12 N 1.31387 * 120.00385 * 356.57955 * 11 9 7 13 13 Si 1.86804 * 120.00012 * 176.57712 * 11 9 7 14 14 H 1.48501 * 109.46980 * 90.00021 * 13 11 9 15 15 H 1.48504 * 109.47020 * 210.00001 * 13 11 9 16 16 H 1.48502 * 109.47119 * 329.99829 * 13 11 9 17 17 C 1.39792 * 119.81572 * 0.02562 * 4 3 2 18 18 C 1.37689 * 119.90400 * 0.02562 * 17 4 3 19 19 C 1.50699 * 119.95493 * 180.02562 * 18 17 4 20 20 C 1.39009 * 120.09260 * 359.97337 * 18 17 4 21 21 O 1.35721 * 119.90881 * 179.97438 * 20 18 17 22 22 C 1.42895 * 116.99943 * 263.35671 * 21 20 18 23 23 C 1.53001 * 109.47668 * 96.17609 * 22 21 20 24 24 C 1.53002 * 109.46799 * 216.17475 * 22 21 20 25 25 H 1.08996 * 109.47574 * 89.99364 * 1 2 3 26 26 H 1.09003 * 109.46984 * 209.99680 * 1 2 3 27 27 H 1.09001 * 109.46999 * 329.98890 * 1 2 3 28 28 H 1.08003 * 120.04632 * 359.73388 * 3 2 1 29 29 H 1.09001 * 109.47434 * 25.65673 * 8 7 5 30 30 H 1.09003 * 109.47147 * 145.65421 * 8 7 5 31 31 H 1.09002 * 109.47376 * 265.65682 * 8 7 5 32 32 H 0.96990 * 120.00314 * 180.02562 * 12 11 9 33 33 H 1.07998 * 120.05311 * 180.02562 * 17 4 3 34 34 H 1.09002 * 109.47059 * 268.32744 * 19 18 17 35 35 H 1.09004 * 109.47247 * 28.32292 * 19 18 17 36 36 H 1.08999 * 109.47498 * 148.32373 * 19 18 17 37 37 H 1.09002 * 109.47362 * 336.17167 * 22 21 20 38 38 H 1.08999 * 109.46864 * 61.79206 * 23 22 21 39 39 H 1.08998 * 109.47420 * 181.79185 * 23 22 21 40 40 H 1.09003 * 109.46909 * 301.79258 * 23 22 21 41 41 H 1.08997 * 109.47202 * 59.99961 * 24 22 21 42 42 H 1.09003 * 109.47410 * 179.97438 * 24 22 21 43 43 H 1.08994 * 109.47197 * 300.00054 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1929 0.0000 4 6 3.5924 1.1918 -0.0005 5 6 4.3330 2.4673 -0.0011 6 8 5.3914 2.5557 -0.5938 7 7 3.8370 3.5349 0.6552 8 6 2.6360 3.3932 1.4822 9 6 4.4553 4.7517 0.5490 10 1 5.5021 4.8046 0.2888 11 6 3.7357 5.9192 0.7762 12 7 2.4473 5.8587 1.0267 13 14 4.6005 7.5743 0.7255 14 1 4.5587 8.1124 -0.6580 15 1 3.9163 8.5187 1.6449 16 1 6.0139 7.4074 1.1492 17 6 4.2864 -0.0217 -0.0016 18 6 3.5912 -1.2101 -0.0027 19 6 4.3382 -2.5189 -0.0033 20 6 2.2011 -1.2044 -0.0021 21 8 1.5195 -2.3781 -0.0037 22 6 1.0659 -2.8631 -1.2689 23 6 2.0733 -3.8751 -1.8184 24 6 -0.2953 -3.5404 -1.0972 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5140 28 1 1.6544 2.1282 -0.0043 29 1 2.5473 2.3607 1.8202 30 1 2.7100 4.0533 2.3464 31 1 1.7571 3.6600 0.8953 32 1 1.9452 6.6733 1.1848 33 1 5.3664 -0.0271 -0.0016 34 1 4.4927 -2.8487 -1.0307 35 1 5.3038 -2.3864 0.4848 36 1 3.7586 -3.2684 0.5356 37 1 0.9717 -2.0297 -1.9651 38 1 2.1437 -4.7237 -1.1379 39 1 1.7433 -4.2212 -2.7978 40 1 3.0506 -3.4013 -1.9107 41 1 -1.0130 -2.8195 -0.7058 42 1 -0.6416 -3.9100 -2.0624 43 1 -0.2011 -4.3738 -0.4011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197228723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:03 Heat of formation + Delta-G solvation = -64.249946 kcal Electronic energy + Delta-G solvation = -23843.633404 eV Core-core repulsion = 20467.691357 eV Total energy + Delta-G solvation = -3375.942047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.60839 -40.34834 -38.25109 -36.81682 -34.71202 -34.14313 -33.58102 -31.94877 -28.79035 -28.16365 -27.86468 -27.20010 -26.71859 -24.12955 -22.28105 -21.94930 -20.64089 -19.06491 -18.90408 -18.00487 -17.19820 -16.78906 -16.51088 -15.97764 -15.81123 -15.33517 -15.04211 -14.83145 -14.40338 -14.23283 -14.17698 -14.05541 -13.81194 -13.73276 -13.44039 -13.19020 -13.07261 -13.02290 -12.93737 -12.74604 -12.69257 -12.57398 -12.44902 -12.16804 -12.07722 -11.91250 -11.65475 -11.06363 -10.77234 -10.54224 -9.80800 -9.60796 -9.41164 -8.38414 -6.05764 -0.14455 0.31531 1.36896 1.39230 1.52180 1.87524 2.23624 2.47273 2.85529 3.00689 3.09776 3.76736 3.80342 3.89150 4.02469 4.13763 4.23688 4.29059 4.35111 4.38441 4.55525 4.63962 4.67562 4.70471 4.79432 4.79985 4.84544 4.94820 4.98363 4.99074 5.01205 5.15374 5.26880 5.30759 5.33386 5.35022 5.39151 5.42163 5.43698 5.51777 5.72783 6.03415 6.41710 6.62330 7.07125 7.34028 7.91721 8.61944 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.003954 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.900495 B = 7079.258924 C = 7768.027658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.110 4.110 3 C -0.093 4.093 4 C -0.122 4.122 5 C 0.468 3.532 6 O -0.635 6.635 7 N -0.447 5.447 8 C 0.126 3.874 9 C -0.349 4.349 10 H 0.074 0.926 11 C 0.002 3.998 12 N -0.892 5.892 13 Si 0.996 3.004 14 H -0.273 1.273 15 H -0.264 1.264 16 H -0.272 1.272 17 C -0.081 4.081 18 C -0.105 4.105 19 C -0.104 4.104 20 C 0.108 3.892 21 O -0.328 6.328 22 C 0.078 3.922 23 C -0.177 4.177 24 C -0.148 4.148 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.132 0.868 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.277 0.723 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.739 -17.790 -1.932 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.111 4.111 3 C -0.112 4.112 4 C -0.125 4.125 5 C 0.259 3.741 6 O -0.525 6.525 7 N -0.164 5.164 8 C -0.017 4.017 9 C -0.477 4.477 10 H 0.092 0.908 11 C -0.201 4.201 12 N -0.530 5.530 13 Si 0.819 3.181 14 H -0.199 1.199 15 H -0.188 1.188 16 H -0.196 1.196 17 C -0.100 4.100 18 C -0.106 4.106 19 C -0.160 4.160 20 C 0.064 3.936 21 O -0.246 6.246 22 C 0.023 3.977 23 C -0.235 4.235 24 C -0.205 4.205 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.150 0.850 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.483 -17.687 -1.973 19.715 hybrid contribution 0.726 1.464 -0.147 1.640 sum -7.757 -16.223 -2.119 18.106 Atomic orbital electron populations 1.20754 0.88312 1.03957 1.03220 1.20348 0.98257 0.91371 1.01115 1.21425 0.92239 0.98870 0.98680 1.20024 0.94520 0.93160 1.04826 1.18698 0.87180 0.85434 0.82831 1.90540 1.25896 1.85648 1.50417 1.43716 1.25514 1.07659 1.39467 1.21733 0.86980 0.98209 0.94738 1.19704 0.95685 0.83211 1.49078 0.90828 1.26186 0.96141 1.02657 0.95091 1.70034 1.06980 1.30454 1.45510 0.84905 0.78205 0.76472 0.78561 1.19869 1.18780 1.19619 1.20968 0.99888 0.90397 0.98776 1.20238 0.93201 0.96064 1.01055 1.20825 0.99609 0.92385 1.03205 1.18458 0.89251 0.85330 1.00607 1.85935 1.72232 1.34927 1.31517 1.22594 0.95554 0.96261 0.83243 1.22450 0.99337 0.99582 1.02087 1.21939 0.93765 1.01080 1.03679 0.90146 0.89850 0.90737 0.85026 0.92593 0.92701 0.92253 0.91292 0.86059 0.89873 0.91039 0.89913 0.92538 0.91042 0.89875 0.92536 0.91813 0.89153 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 9.57 71.24 0.68 -1.74 16 2 C -0.11 -3.35 5.89 -19.81 -0.12 -3.47 16 3 C -0.09 -3.49 7.24 22.51 0.16 -3.33 16 4 C -0.12 -5.33 5.18 -20.08 -0.10 -5.43 16 5 C 0.47 25.53 7.31 86.68 0.63 26.16 16 6 O -0.64 -39.22 16.49 -4.11 -0.07 -39.29 16 7 N -0.45 -24.74 3.02 -662.55 -2.00 -26.73 16 8 C 0.13 5.94 7.04 127.77 0.90 6.84 16 9 C -0.35 -20.61 9.31 84.09 0.78 -19.83 16 10 H 0.07 4.63 7.36 -2.91 -0.02 4.60 16 11 C 0.00 0.09 5.27 84.95 0.45 0.54 16 12 N -0.89 -46.99 10.30 21.68 0.22 -46.77 16 13 Si 1.00 42.86 29.55 68.60 2.03 44.89 16 14 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 15 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 17 C -0.08 -3.08 9.24 22.52 0.21 -2.88 16 18 C -0.11 -3.21 5.89 -19.81 -0.12 -3.33 16 19 C -0.10 -2.37 8.66 71.24 0.62 -1.75 16 20 C 0.11 3.13 5.50 22.64 0.12 3.25 16 21 O -0.33 -7.86 7.83 -90.43 -0.71 -8.57 16 22 C 0.08 1.42 3.19 30.60 0.10 1.52 16 23 C -0.18 -2.69 9.17 71.98 0.66 -2.03 16 24 C -0.15 -1.92 9.56 71.98 0.69 -1.23 16 25 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.08 1.69 7.43 -2.39 -0.02 1.68 16 27 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 28 H 0.13 5.09 5.43 -2.91 -0.02 5.07 16 29 H 0.06 2.33 5.79 -2.39 -0.01 2.32 16 30 H 0.05 2.71 7.08 -2.39 -0.02 2.69 16 31 H 0.06 2.80 6.27 -2.39 -0.01 2.78 16 32 H 0.28 13.53 8.31 -92.72 -0.77 12.76 16 33 H 0.12 4.72 7.98 -2.91 -0.02 4.70 16 34 H 0.08 1.65 6.30 -2.39 -0.02 1.64 16 35 H 0.07 1.55 8.07 -2.39 -0.02 1.53 16 36 H 0.08 1.71 7.58 -2.39 -0.02 1.69 16 37 H 0.06 1.11 7.84 -2.39 -0.02 1.10 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 0.98 5.40 -2.39 -0.01 0.97 16 41 H 0.06 0.84 8.04 -2.39 -0.02 0.82 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -69.92 344.21 6.15 -63.77 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 1.01 Total: 19.41 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 5.67 Total: -6.70 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -1.78 Total: -73.50 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -0.78 Total: -47.86 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -69.92 6.15 -63.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197228723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.485 kcal (2) G-P(sol) polarization free energy of solvation -69.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds