Wall clock time and date at job start Tue Mar 31 2020 06:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 117.00229 * 2 1 4 4 C 1.38793 * 120.02707 * 359.97438 * 3 2 1 5 5 C 1.38146 * 120.05556 * 179.97438 * 4 3 2 6 6 C 1.38204 * 120.10738 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.97118 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.47267 * 260.00541 * 7 6 5 9 9 C 1.47961 * 111.00005 * 189.99947 * 8 7 6 10 10 C 1.53934 * 86.17939 * 137.58072 * 9 8 7 11 11 C 1.50703 * 113.73399 * 221.81705 * 10 9 8 12 12 H 1.07999 * 119.99920 * 358.09577 * 11 10 9 13 13 C 1.37877 * 119.99669 * 178.10223 * 11 10 9 14 14 N 1.31510 * 120.00506 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99624 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47014 * 59.99839 * 15 13 11 17 17 H 1.48503 * 109.47043 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47160 * 300.00101 * 15 13 11 19 19 C 1.48296 * 111.00409 * 289.35248 * 8 7 6 20 20 C 1.38749 * 120.05485 * 0.25847 * 6 5 4 21 21 O 1.35899 * 120.02605 * 179.71831 * 20 6 5 22 22 C 1.42907 * 116.99547 * 90.00270 * 21 20 6 23 23 C 1.38605 * 120.02443 * 179.97438 * 3 2 1 24 24 C 1.50703 * 120.05968 * 0.04476 * 23 3 2 25 25 H 1.08994 * 109.47567 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47644 * 300.00434 * 1 2 3 27 27 H 1.09008 * 109.47048 * 60.00308 * 1 2 3 28 28 H 1.08003 * 119.97120 * 359.96319 * 4 3 2 29 29 H 1.07997 * 119.94870 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.47111 * 140.00307 * 7 6 5 31 31 H 1.09007 * 109.47191 * 20.00470 * 7 6 5 32 32 H 1.09007 * 113.75652 * 23.26342 * 9 8 7 33 33 H 1.08992 * 113.86038 * 251.91266 * 9 8 7 34 34 H 1.09002 * 113.73279 * 90.64057 * 10 9 8 35 35 H 0.96995 * 120.00309 * 180.02562 * 14 13 11 36 36 H 1.09001 * 113.86054 * 108.14174 * 19 8 7 37 37 H 1.09000 * 113.76062 * 336.68481 * 19 8 7 38 38 H 1.08991 * 109.46697 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.47238 * 299.99892 * 22 21 20 40 40 H 1.08996 * 109.46812 * 59.99684 * 22 21 20 41 41 H 1.08998 * 109.47044 * 90.00072 * 24 23 3 42 42 H 1.08996 * 109.46996 * 210.00294 * 24 23 3 43 43 H 1.09004 * 109.46524 * 329.99745 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3753 -0.0005 5 6 1.9173 3.6064 0.0000 6 6 3.2972 3.6820 0.0016 7 6 3.9776 5.0267 0.0016 8 7 4.4148 5.3543 -1.3621 9 6 5.2916 6.5461 -1.3658 10 6 6.1635 5.7742 -2.3725 11 6 7.6434 5.9097 -2.1221 12 1 7.9997 6.5323 -1.3148 13 6 8.5424 5.2389 -2.9238 14 7 8.1086 4.4812 -3.9073 15 14 10.3769 5.4074 -2.6139 16 1 10.6932 4.9309 -1.2434 17 1 11.1234 4.5921 -3.6055 18 1 10.7723 6.8327 -2.7459 19 6 5.5491 4.4942 -1.7776 20 6 4.0567 2.5208 -0.0027 21 8 5.4137 2.5958 -0.0069 22 6 6.0654 2.6295 1.2644 23 6 3.4301 1.2839 0.0005 24 6 4.2527 0.0212 0.0001 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2121 2.3188 -0.0016 29 1 1.3278 4.5114 -0.0008 30 1 4.8433 4.9959 0.6632 31 1 3.2795 5.7871 0.3519 32 1 5.7835 6.7325 -0.4111 33 1 4.8228 7.4370 -1.7835 34 1 5.8910 5.9489 -3.4133 35 1 8.7411 4.0090 -4.4711 36 1 5.2845 3.7459 -2.5247 37 1 6.1162 4.0817 -0.9432 38 1 7.1438 2.6889 1.1183 39 1 5.7256 3.5010 1.8240 40 1 5.8238 1.7238 1.8206 41 1 4.4514 -0.2826 -1.0276 42 1 5.1965 0.2023 0.5144 43 1 3.7050 -0.7693 0.5134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204255748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:01 Heat of formation + Delta-G solvation = -31.011871 kcal Electronic energy + Delta-G solvation = -24149.235403 eV Core-core repulsion = 20774.734666 eV Total energy + Delta-G solvation = -3374.500736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.76663 -40.39586 -39.45920 -37.43160 -34.84109 -33.93844 -32.12993 -29.86157 -28.60479 -28.45246 -27.02207 -26.80330 -26.55720 -24.11506 -22.66524 -21.61141 -20.34376 -19.34897 -18.66037 -17.94811 -17.23653 -16.95268 -16.66917 -16.47280 -16.17875 -15.99788 -15.71724 -15.54491 -14.72208 -14.40138 -14.33582 -14.15342 -13.84865 -13.50313 -13.38020 -13.18570 -12.96950 -12.87264 -12.84838 -12.70781 -12.47796 -12.34009 -12.10163 -11.92022 -11.77968 -11.47428 -11.05875 -10.86062 -10.80022 -10.40600 -9.61157 -9.45609 -8.98006 -8.09170 -6.20884 0.19090 0.36144 1.43111 1.45135 1.52885 2.24174 2.44845 2.51162 3.00306 3.20488 3.48077 3.75743 3.84469 3.92473 4.15328 4.30659 4.33566 4.39832 4.41502 4.43350 4.43563 4.52323 4.61545 4.63664 4.68500 4.73039 4.76812 4.78555 4.83720 4.87792 5.05601 5.06046 5.22436 5.30666 5.31301 5.41308 5.51518 5.60205 5.67600 5.72915 5.91882 6.36020 6.39667 6.47072 6.61975 6.87340 7.46759 9.00310 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022228 B = 0.004469 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.344277 B = 6263.376346 C = 6805.981426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.130 3.870 4 C -0.207 4.207 5 C -0.060 4.060 6 C -0.142 4.142 7 C 0.072 3.928 8 N -0.490 5.490 9 C 0.014 3.986 10 C 0.013 3.987 11 C -0.529 4.529 12 H 0.060 0.940 13 C 0.015 3.985 14 N -0.923 5.923 15 Si 0.956 3.044 16 H -0.267 1.267 17 H -0.287 1.287 18 H -0.269 1.269 19 C 0.043 3.957 20 C 0.125 3.875 21 O -0.340 6.340 22 C 0.029 3.971 23 C -0.161 4.161 24 C -0.092 4.092 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.161 0.839 29 H 0.150 0.850 30 H 0.037 0.963 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.020 0.980 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.474 -7.365 13.083 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.084 3.916 4 C -0.225 4.225 5 C -0.079 4.079 6 C -0.143 4.143 7 C -0.055 4.055 8 N -0.213 5.213 9 C -0.114 4.114 10 C -0.006 4.006 11 C -0.567 4.567 12 H 0.078 0.922 13 C -0.184 4.184 14 N -0.561 5.561 15 Si 0.781 3.219 16 H -0.192 1.192 17 H -0.213 1.213 18 H -0.194 1.194 19 C -0.085 4.085 20 C 0.081 3.919 21 O -0.258 6.258 22 C -0.064 4.064 23 C -0.162 4.162 24 C -0.148 4.148 25 H 0.138 0.862 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.178 0.822 29 H 0.168 0.832 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.839 -7.666 12.438 20.825 hybrid contribution 1.502 0.066 0.296 1.532 sum -13.337 -7.600 12.734 19.945 Atomic orbital electron populations 1.23376 0.76291 1.05636 1.02382 1.86028 1.23491 1.26128 1.88542 1.18660 0.90952 0.85264 0.96746 1.21467 1.01330 0.91162 1.08574 1.20942 0.92488 0.98493 0.95958 1.20139 0.94723 0.94213 1.05226 1.21403 0.98716 0.93775 0.91648 1.68592 1.27453 1.04577 1.20650 1.23902 0.93690 0.94434 0.99410 1.20358 0.93728 0.92896 0.93580 1.21369 0.91760 1.28543 1.15076 0.92223 1.25817 1.03333 0.94724 0.94532 1.70116 1.35905 1.30802 1.19320 0.85654 0.79838 0.78308 0.78108 1.19170 1.21279 1.19362 1.23918 0.90173 0.95896 0.98558 1.18330 0.83348 0.91362 0.98816 1.86275 1.15682 1.93654 1.30145 1.23087 0.98155 1.01242 0.83942 1.19629 0.92157 0.95880 1.08552 1.20426 0.98698 0.93646 1.02053 0.86195 0.91242 0.91960 0.82190 0.83211 0.94466 0.88837 0.91871 0.90306 0.96676 0.93093 0.96107 0.90040 0.88549 0.93185 0.91926 0.92315 0.91639 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.67 9.54 -92.43 -0.88 -8.55 16 3 C 0.13 3.54 6.66 22.49 0.15 3.69 16 4 C -0.21 -4.92 9.04 22.38 0.20 -4.72 16 5 C -0.06 -1.61 9.66 22.24 0.21 -1.40 16 6 C -0.14 -4.70 5.30 -19.75 -0.10 -4.80 16 7 C 0.07 2.51 4.88 85.56 0.42 2.93 16 8 N -0.49 -20.98 6.26 -911.60 -5.71 -26.68 16 9 C 0.01 0.61 7.53 86.41 0.65 1.26 16 10 C 0.01 0.73 3.60 -10.89 -0.04 0.69 16 11 C -0.53 -29.87 8.77 25.60 0.22 -29.65 16 12 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 13 C 0.02 0.86 5.46 84.66 0.46 1.32 16 14 N -0.92 -56.41 13.29 21.45 0.28 -56.13 16 15 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 19 C 0.04 2.17 5.75 86.34 0.50 2.67 16 20 C 0.13 4.38 5.21 22.49 0.12 4.50 16 21 O -0.34 -12.74 5.41 -92.41 -0.50 -13.24 16 22 C 0.03 0.85 10.34 113.37 1.17 2.02 16 23 C -0.16 -5.09 5.91 -19.68 -0.12 -5.20 16 24 C -0.09 -2.59 9.57 71.24 0.68 -1.91 16 25 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 0.72 7.66 -2.39 -0.02 0.71 16 27 H 0.06 0.76 7.66 -2.38 -0.02 0.74 16 28 H 0.16 2.62 6.29 -2.91 -0.02 2.60 16 29 H 0.15 3.23 8.03 -2.91 -0.02 3.21 16 30 H 0.04 1.32 6.12 -2.39 -0.01 1.31 16 31 H 0.09 2.73 8.00 -2.38 -0.02 2.72 16 32 H 0.06 2.59 7.74 -2.38 -0.02 2.57 16 33 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.01 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 36 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 4.13 4.97 -2.39 -0.01 4.12 16 38 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.05 1.35 7.12 -2.39 -0.02 1.33 16 40 H 0.06 1.51 7.24 -2.39 -0.02 1.49 16 41 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.06 1.79 6.31 -2.39 -0.02 1.77 16 43 H 0.08 1.94 7.53 -2.39 -0.02 1.92 16 Total: -1.00 -69.62 342.46 1.87 -67.75 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 1.00 Total: 17.90 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 5.64 Total: -27.27 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -5.42 Total: -82.81 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -1.38 Total: -21.79 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.62 1.87 -67.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204255748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.741 kcal (2) G-P(sol) polarization free energy of solvation -69.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds