Wall clock time and date at job start Tue Mar 31 2020 06:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94286 * 2 1 4 4 C 1.38139 * 120.05510 * 180.02562 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 O 1.42898 * 109.47286 * 64.99657 * 8 7 6 10 10 C 1.42897 * 113.99965 * 179.97438 * 9 8 7 11 11 H 1.08997 * 110.64398 * 31.69128 * 10 9 8 12 12 C 1.55162 * 110.72155 * 155.02901 * 10 9 8 13 13 C 1.54909 * 101.58341 * 153.86492 * 12 10 9 14 14 N 1.47423 * 104.83195 * 322.98889 * 13 12 10 15 15 C 1.36937 * 125.64502 * 204.09047 * 14 13 12 16 16 H 1.08001 * 119.99541 * 180.02562 * 15 14 13 17 17 C 1.38807 * 120.00509 * 0.04532 * 15 14 13 18 18 N 1.31626 * 119.99448 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00498 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46791 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47049 * 119.99669 * 19 17 15 22 22 H 1.48502 * 109.47021 * 240.00293 * 19 17 15 23 23 C 1.47025 * 108.70389 * 24.12974 * 14 13 12 24 24 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 25 25 C 1.38145 * 119.94323 * 359.49123 * 24 5 4 26 26 H 1.08994 * 109.46995 * 90.00338 * 1 2 3 27 27 H 1.09000 * 109.46656 * 210.00412 * 1 2 3 28 28 H 1.08997 * 109.47409 * 330.00482 * 1 2 3 29 29 H 1.08008 * 119.96969 * 0.04028 * 3 2 1 30 30 H 1.08005 * 120.02914 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 32 32 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 33 33 H 1.08998 * 109.47363 * 184.99948 * 8 7 6 34 34 H 1.09000 * 109.46903 * 305.00059 * 8 7 6 35 35 H 1.09003 * 110.99958 * 271.94093 * 12 10 9 36 36 H 1.09000 * 110.99885 * 35.78745 * 12 10 9 37 37 H 1.08995 * 110.36585 * 204.15134 * 13 12 10 38 38 H 1.09004 * 110.45644 * 81.87693 * 13 12 10 39 39 H 0.96995 * 119.99541 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.88025 * 239.52189 * 23 14 13 41 41 H 1.08998 * 110.00907 * 118.42767 * 23 14 13 42 42 H 1.08001 * 120.02769 * 179.72249 * 24 5 4 43 43 H 1.08006 * 119.97076 * 180.25587 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 -0.0005 5 6 4.2734 0.0001 -0.0005 6 8 5.6325 0.0002 -0.0016 7 6 6.2813 -1.2731 -0.0021 8 6 7.7981 -1.0726 -0.0026 9 8 8.1961 -0.4459 1.2183 10 6 9.6022 -0.2125 1.3203 11 1 10.0324 -0.0218 0.3372 12 6 9.8947 0.9636 2.2893 13 6 11.3237 0.6171 2.7766 14 7 11.3369 -0.8525 2.8926 15 6 12.1719 -1.5821 3.6960 16 1 12.1027 -2.6599 3.7095 17 6 13.1070 -0.9367 4.4934 18 7 13.1914 0.3767 4.4768 19 14 14.2457 -1.9320 5.5898 20 1 13.9506 -3.3783 5.4267 21 1 15.6562 -1.6680 5.2080 22 1 14.0348 -1.5411 7.0069 23 6 10.3056 -1.4050 2.0021 24 6 3.5787 -1.2007 -0.0054 25 6 2.1973 -1.1980 0.0004 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3632 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 1.6557 2.1327 0.0007 30 1 4.1172 2.1370 -0.0001 31 1 5.9891 -1.8301 0.8881 32 1 5.9877 -1.8301 -0.8918 33 1 8.2924 -2.0398 -0.0926 34 1 8.0807 -0.4404 -0.8444 35 1 9.8824 1.9171 1.7612 36 1 9.1892 0.9698 3.1201 37 1 11.5153 1.0759 3.7466 38 1 12.0649 0.9469 2.0487 39 1 13.8445 0.8278 5.0342 40 1 9.5834 -1.9789 2.5826 41 1 10.7667 -2.0435 1.2486 42 1 4.1174 -2.1367 -0.0100 43 1 1.6559 -2.1326 0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206630413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:42 Heat of formation + Delta-G solvation = -34.906585 kcal Electronic energy + Delta-G solvation = -22332.165601 eV Core-core repulsion = 18957.495977 eV Total energy + Delta-G solvation = -3374.669624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.28555 -38.51138 -37.71029 -35.83207 -32.52912 -32.06303 -31.24616 -30.11626 -28.98382 -26.98219 -26.40057 -24.42471 -23.73174 -22.18003 -21.20055 -20.20315 -20.10844 -18.45359 -16.98546 -16.77635 -16.20698 -15.75698 -15.47456 -14.81221 -14.69675 -14.57743 -14.20785 -13.88037 -13.82755 -13.67442 -13.32988 -12.92484 -12.48363 -12.32150 -12.29481 -11.76103 -11.70909 -11.57287 -11.40614 -11.16867 -10.97435 -10.91958 -10.81617 -10.69180 -10.25024 -10.07879 -9.76245 -9.52424 -9.19340 -9.12144 -8.64953 -8.18253 -6.83170 -5.64729 -3.06742 1.15388 1.25051 3.08608 3.40501 3.45482 3.48382 3.56705 3.84026 4.50294 4.56152 4.65142 4.75417 4.82729 5.00827 5.06013 5.14447 5.18750 5.26674 5.34078 5.38996 5.44012 5.50309 5.51648 5.57508 5.61579 5.70299 5.77935 5.85097 5.89320 6.11172 6.19517 6.37706 6.40811 6.53242 6.61654 6.62810 6.66447 6.72999 7.32082 7.50912 7.62901 7.63677 7.86587 8.36633 9.22305 9.83026 10.47573 11.39435 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036470 B = 0.002388 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.570721 B =11722.184020 C =11824.404397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.133 4.133 3 C -0.081 4.081 4 C -0.150 4.150 5 C 0.131 3.869 6 O -0.303 6.303 7 C 0.063 3.937 8 C 0.062 3.938 9 O -0.371 6.371 10 C 0.075 3.925 11 H 0.063 0.937 12 C -0.136 4.136 13 C 0.152 3.848 14 N -0.602 5.602 15 C -0.221 4.221 16 H 0.078 0.922 17 C -0.013 4.013 18 N -0.923 5.923 19 Si 0.916 3.084 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.116 3.884 24 C -0.208 4.208 25 C -0.080 4.080 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.014 0.986 39 H 0.252 0.748 40 H 0.032 0.968 41 H 0.019 0.981 42 H 0.128 0.872 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.120 -0.858 -12.114 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.134 4.134 3 C -0.099 4.099 4 C -0.168 4.168 5 C 0.086 3.914 6 O -0.217 6.217 7 C -0.012 4.012 8 C -0.015 4.015 9 O -0.290 6.290 10 C 0.017 3.983 11 H 0.081 0.919 12 C -0.175 4.175 13 C 0.027 3.973 14 N -0.329 5.329 15 C -0.349 4.349 16 H 0.096 0.904 17 C -0.208 4.208 18 N -0.572 5.572 19 Si 0.747 3.253 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C -0.010 4.010 24 C -0.227 4.227 25 C -0.099 4.099 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.032 0.968 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.037 0.963 42 H 0.145 0.855 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.935 -0.634 -11.821 24.925 hybrid contribution 0.829 -0.915 0.257 1.261 sum -21.106 -1.549 -11.565 24.116 Atomic orbital electron populations 1.20699 0.91215 1.02556 1.01972 1.19808 0.96134 0.93111 1.04309 1.20838 0.92987 0.97722 0.98354 1.20471 0.93745 0.96549 1.06067 1.19087 0.82761 0.94120 0.95473 1.86183 1.15791 1.31671 1.88007 1.22907 0.92036 0.84377 1.01874 1.22484 0.91880 0.98212 0.88908 1.87999 1.23994 1.80213 1.36754 1.23269 0.79586 0.96972 0.98428 0.91882 1.23128 1.00873 0.95366 0.98106 1.21968 0.88702 0.84432 1.02194 1.44401 1.38810 1.02369 1.47355 1.19132 1.09933 0.90278 1.15581 0.90411 1.24813 0.99683 0.95908 1.00432 1.69797 1.37882 1.06267 1.43209 0.85971 0.80327 0.78842 0.80195 1.20534 1.21748 1.21687 1.21720 0.91770 0.94404 0.93131 1.21271 0.95384 0.97178 1.08884 1.20805 0.93281 0.97623 0.98145 0.91591 0.91822 0.91739 0.85522 0.85097 0.91005 0.90815 0.91141 0.92458 0.91946 0.91129 0.87176 0.96807 0.93724 0.94964 0.96275 0.85464 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.01 36.01 0.36 -0.33 16 2 C -0.13 -1.22 5.88 -104.60 -0.62 -1.83 16 3 C -0.08 -0.77 9.69 -39.61 -0.38 -1.16 16 4 C -0.15 -1.70 9.99 -39.44 -0.39 -2.09 16 5 C 0.13 1.63 6.69 -39.22 -0.26 1.37 16 6 O -0.30 -4.19 10.10 -24.30 -0.25 -4.44 16 7 C 0.06 0.73 5.12 37.16 0.19 0.92 16 8 C 0.06 0.81 6.19 37.16 0.23 1.04 16 9 O -0.37 -6.54 10.04 -40.09 -0.40 -6.95 16 10 C 0.08 1.43 3.40 -24.89 -0.08 1.35 16 11 H 0.06 1.10 7.88 -51.93 -0.41 0.69 16 12 C -0.14 -2.81 6.81 -24.58 -0.17 -2.97 16 13 C 0.15 3.82 5.89 -2.53 -0.01 3.80 16 14 N -0.60 -16.06 3.39 -170.07 -0.58 -16.63 16 15 C -0.22 -6.32 10.27 -15.06 -0.15 -6.47 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 17 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 18 N -0.92 -27.32 10.09 55.49 0.56 -26.76 16 19 Si 0.92 22.35 29.55 -169.99 -5.02 17.33 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 C 0.12 2.56 7.02 -3.06 -0.02 2.54 16 24 C -0.21 -2.22 9.04 -39.44 -0.36 -2.58 16 25 C -0.08 -0.76 9.69 -39.61 -0.38 -1.14 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 28 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 29 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 30 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.07 0.82 7.67 -51.93 -0.40 0.42 16 32 H 0.07 0.63 7.65 -51.93 -0.40 0.24 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.11 3.09 5.87 -51.93 -0.31 2.78 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 40 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 43 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -32.42 352.54 -9.40 -41.82 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.87 Total: -1.66 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -2.15 Total: -8.02 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.02 Total: -43.39 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.65 Total: -11.39 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.42 -9.40 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206630413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.918 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds