Wall clock time and date at job start Tue Mar 31 2020 06:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94286 * 2 1 4 4 C 1.38139 * 120.05510 * 180.02562 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 O 1.42898 * 109.47286 * 64.99657 * 8 7 6 10 10 C 1.42897 * 113.99965 * 179.97438 * 9 8 7 11 11 H 1.08997 * 110.64398 * 31.69128 * 10 9 8 12 12 C 1.55162 * 110.72155 * 155.02901 * 10 9 8 13 13 C 1.54909 * 101.58341 * 153.86492 * 12 10 9 14 14 N 1.47423 * 104.83195 * 322.98889 * 13 12 10 15 15 C 1.36937 * 125.64502 * 204.09047 * 14 13 12 16 16 H 1.08001 * 119.99541 * 180.02562 * 15 14 13 17 17 C 1.38807 * 120.00509 * 0.04532 * 15 14 13 18 18 N 1.31626 * 119.99448 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00498 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46791 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47049 * 119.99669 * 19 17 15 22 22 H 1.48502 * 109.47021 * 240.00293 * 19 17 15 23 23 C 1.47025 * 108.70389 * 24.12974 * 14 13 12 24 24 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 25 25 C 1.38145 * 119.94323 * 359.49123 * 24 5 4 26 26 H 1.08994 * 109.46995 * 90.00338 * 1 2 3 27 27 H 1.09000 * 109.46656 * 210.00412 * 1 2 3 28 28 H 1.08997 * 109.47409 * 330.00482 * 1 2 3 29 29 H 1.08008 * 119.96969 * 0.04028 * 3 2 1 30 30 H 1.08005 * 120.02914 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 32 32 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 33 33 H 1.08998 * 109.47363 * 184.99948 * 8 7 6 34 34 H 1.09000 * 109.46903 * 305.00059 * 8 7 6 35 35 H 1.09003 * 110.99958 * 271.94093 * 12 10 9 36 36 H 1.09000 * 110.99885 * 35.78745 * 12 10 9 37 37 H 1.08995 * 110.36585 * 204.15134 * 13 12 10 38 38 H 1.09004 * 110.45644 * 81.87693 * 13 12 10 39 39 H 0.96995 * 119.99541 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.88025 * 239.52189 * 23 14 13 41 41 H 1.08998 * 110.00907 * 118.42767 * 23 14 13 42 42 H 1.08001 * 120.02769 * 179.72249 * 24 5 4 43 43 H 1.08006 * 119.97076 * 180.25587 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 -0.0005 5 6 4.2734 0.0001 -0.0005 6 8 5.6325 0.0002 -0.0016 7 6 6.2813 -1.2731 -0.0021 8 6 7.7981 -1.0726 -0.0026 9 8 8.1961 -0.4459 1.2183 10 6 9.6022 -0.2125 1.3203 11 1 10.0324 -0.0218 0.3372 12 6 9.8947 0.9636 2.2893 13 6 11.3237 0.6171 2.7766 14 7 11.3369 -0.8525 2.8926 15 6 12.1719 -1.5821 3.6960 16 1 12.1027 -2.6599 3.7095 17 6 13.1070 -0.9367 4.4934 18 7 13.1914 0.3767 4.4768 19 14 14.2457 -1.9320 5.5898 20 1 13.9506 -3.3783 5.4267 21 1 15.6562 -1.6680 5.2080 22 1 14.0348 -1.5411 7.0069 23 6 10.3056 -1.4050 2.0021 24 6 3.5787 -1.2007 -0.0054 25 6 2.1973 -1.1980 0.0004 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3632 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 1.6557 2.1327 0.0007 30 1 4.1172 2.1370 -0.0001 31 1 5.9891 -1.8301 0.8881 32 1 5.9877 -1.8301 -0.8918 33 1 8.2924 -2.0398 -0.0926 34 1 8.0807 -0.4404 -0.8444 35 1 9.8824 1.9171 1.7612 36 1 9.1892 0.9698 3.1201 37 1 11.5153 1.0759 3.7466 38 1 12.0649 0.9469 2.0487 39 1 13.8445 0.8278 5.0342 40 1 9.5834 -1.9789 2.5826 41 1 10.7667 -2.0435 1.2486 42 1 4.1174 -2.1367 -0.0100 43 1 1.6559 -2.1326 0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206630413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:42 Heat of formation + Delta-G solvation = -53.439430 kcal Electronic energy + Delta-G solvation = -22332.969245 eV Core-core repulsion = 18957.495977 eV Total energy + Delta-G solvation = -3375.473268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10844 -39.92563 -38.68410 -37.42818 -34.28009 -33.03789 -31.99733 -31.44346 -30.60311 -28.74550 -27.08777 -26.36086 -24.67039 -23.02431 -22.12893 -21.90978 -21.80803 -19.30507 -18.98936 -18.07445 -17.14352 -16.95657 -16.60699 -16.22939 -16.09920 -15.73329 -15.39081 -15.12460 -14.85003 -14.46580 -14.39332 -14.28341 -14.06651 -13.61146 -13.20076 -13.14508 -13.01742 -12.85009 -12.69711 -12.62838 -12.41752 -12.34189 -12.00187 -11.98646 -11.79490 -11.69856 -11.60146 -11.33107 -10.78535 -10.52272 -9.94504 -8.96585 -8.93351 -7.80114 -5.25648 0.40331 0.48060 1.45996 1.47710 1.58067 2.24651 2.45108 2.62556 2.81431 3.30565 3.68977 3.76193 3.84968 3.95805 3.99877 4.06759 4.10423 4.14204 4.17754 4.32638 4.40391 4.45814 4.47704 4.59464 4.64229 4.74994 4.79953 4.85565 4.90512 4.98324 5.01716 5.02633 5.12000 5.20061 5.39865 5.42833 5.43264 5.57975 5.70605 5.75611 5.90974 6.24413 6.31286 6.50058 7.07184 7.73551 8.37438 9.22446 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036470 B = 0.002388 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.570721 B =11722.184020 C =11824.404397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.136 4.136 3 C -0.086 4.086 4 C -0.169 4.169 5 C 0.103 3.897 6 O -0.329 6.329 7 C 0.063 3.937 8 C 0.054 3.946 9 O -0.388 6.388 10 C 0.093 3.907 11 H 0.085 0.915 12 C -0.126 4.126 13 C 0.155 3.845 14 N -0.626 5.626 15 C -0.241 4.241 16 H 0.082 0.918 17 C -0.070 4.070 18 N -0.950 5.950 19 Si 0.985 3.015 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.113 3.887 24 C -0.215 4.215 25 C -0.087 4.087 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.128 0.872 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.077 0.923 38 H -0.002 1.002 39 H 0.249 0.751 40 H 0.026 0.974 41 H 0.032 0.968 42 H 0.141 0.859 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.862 -2.017 -13.145 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C -0.104 4.104 4 C -0.188 4.188 5 C 0.058 3.942 6 O -0.244 6.244 7 C -0.011 4.011 8 C -0.023 4.023 9 O -0.307 6.307 10 C 0.035 3.965 11 H 0.103 0.897 12 C -0.164 4.164 13 C 0.030 3.970 14 N -0.353 5.353 15 C -0.369 4.369 16 H 0.099 0.901 17 C -0.262 4.262 18 N -0.600 5.600 19 Si 0.813 3.187 20 H -0.190 1.190 21 H -0.217 1.217 22 H -0.217 1.217 23 C -0.013 4.013 24 C -0.234 4.234 25 C -0.105 4.105 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.166 0.834 30 H 0.146 0.854 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.016 0.984 39 H 0.058 0.942 40 H 0.044 0.956 41 H 0.050 0.950 42 H 0.158 0.842 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.712 -1.809 -12.877 27.043 hybrid contribution 1.256 -0.568 0.532 1.478 sum -22.456 -2.377 -12.344 25.735 Atomic orbital electron populations 1.20754 0.89119 1.03500 1.02938 1.20221 0.97752 0.92818 1.02860 1.21138 0.92405 0.99075 0.97750 1.20679 0.94752 0.96419 1.06938 1.19350 0.82416 0.95179 0.97250 1.86125 1.16756 1.32855 1.88639 1.23001 0.90834 0.84055 1.03236 1.22814 0.93120 0.98983 0.87333 1.87975 1.22556 1.80802 1.39327 1.22975 0.80581 0.94450 0.98515 0.89688 1.22942 0.97458 0.97508 0.98517 1.21733 0.91149 0.83967 1.00144 1.44718 1.39468 1.03092 1.48060 1.19507 1.10485 0.90826 1.16110 0.90057 1.25714 1.01423 0.97061 1.01990 1.70046 1.38357 1.07709 1.43859 0.84911 0.77900 0.78062 0.77830 1.19048 1.21665 1.21732 1.21886 0.90854 0.95755 0.92776 1.21490 0.96114 0.97105 1.08649 1.21161 0.93021 0.98865 0.97477 0.90502 0.90867 0.90884 0.83438 0.85395 0.91311 0.87676 0.89288 0.91379 0.89301 0.92195 0.90540 0.98415 0.94157 0.95615 0.95031 0.84175 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 71.24 0.71 -0.36 16 2 C -0.14 -2.22 5.88 -19.85 -0.12 -2.33 16 3 C -0.09 -1.53 9.69 22.25 0.22 -1.32 16 4 C -0.17 -3.82 9.99 22.36 0.22 -3.59 16 5 C 0.10 2.52 6.69 22.50 0.15 2.67 16 6 O -0.33 -8.94 10.10 -87.83 -0.89 -9.83 16 7 C 0.06 1.36 5.12 71.98 0.37 1.73 16 8 C 0.05 1.29 6.19 71.98 0.45 1.74 16 9 O -0.39 -13.15 10.04 -144.34 -1.45 -14.59 16 10 C 0.09 3.42 3.40 31.79 0.11 3.53 16 11 H 0.09 2.77 7.88 -2.39 -0.02 2.75 16 12 C -0.13 -5.15 6.81 31.99 0.22 -4.93 16 13 C 0.16 7.97 5.89 86.86 0.51 8.48 16 14 N -0.63 -33.78 3.39 -691.98 -2.35 -36.13 16 15 C -0.24 -13.90 10.27 84.03 0.86 -13.04 16 16 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 17 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 18 N -0.95 -57.69 10.09 21.65 0.22 -57.48 16 19 Si 0.99 46.34 29.55 68.60 2.03 48.36 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 C 0.11 4.91 7.02 86.73 0.61 5.52 16 24 C -0.21 -4.30 9.04 22.36 0.20 -4.09 16 25 C -0.09 -1.47 9.69 22.25 0.22 -1.26 16 26 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 28 H 0.07 0.62 8.08 -2.39 -0.02 0.60 16 29 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 30 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 31 H 0.07 1.49 7.67 -2.39 -0.02 1.47 16 32 H 0.11 1.55 7.65 -2.39 -0.02 1.54 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 1.51 8.11 -2.39 -0.02 1.49 16 35 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.08 4.46 5.87 -2.39 -0.01 4.45 16 38 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 40 H 0.03 1.15 8.06 -2.39 -0.02 1.13 16 41 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.14 2.28 6.30 -2.91 -0.02 2.26 16 43 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -70.96 352.54 3.73 -67.24 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.98 Total: 13.25 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 5.19 Total: -10.82 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -2.13 Total: -93.61 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -2.34 Total: -24.42 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -70.96 3.73 -67.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206630413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.796 kcal (2) G-P(sol) polarization free energy of solvation -70.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds