Wall clock time and date at job start Tue Mar 31 2020 07:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.50441 * 2 1 4 4 O 1.43365 * 109.63094 * 120.31552 * 2 1 3 5 5 C 1.44197 * 107.28780 * 119.21386 * 4 2 1 6 6 C 1.54910 * 103.23007 * 338.47705 * 5 4 2 7 7 H 1.09006 * 110.97580 * 277.53868 * 6 5 4 8 8 C 1.53001 * 110.97854 * 153.75820 * 6 5 4 9 9 N 1.46503 * 109.47067 * 179.97438 * 8 6 5 10 10 C 1.36940 * 119.99779 * 90.00180 * 9 8 6 11 11 H 1.08000 * 119.99869 * 319.26168 * 10 9 8 12 12 C 1.38811 * 119.99701 * 139.26380 * 10 9 8 13 13 N 1.31625 * 119.99457 * 161.17244 * 12 10 9 14 14 Si 1.86795 * 120.00199 * 341.17608 * 12 10 9 15 15 H 1.48496 * 109.47266 * 95.35581 * 14 12 10 16 16 H 1.48497 * 109.47064 * 215.35675 * 14 12 10 17 17 H 1.48499 * 109.46968 * 335.35554 * 14 12 10 18 18 C 1.46496 * 119.99940 * 269.99616 * 9 8 6 19 19 C 1.50702 * 109.47041 * 84.98338 * 18 9 8 20 20 C 1.38235 * 119.99846 * 264.56199 * 19 18 9 21 21 C 1.38239 * 119.99503 * 179.76673 * 20 19 18 22 22 C 1.38234 * 119.99870 * 0.50553 * 21 20 19 23 23 C 1.38234 * 120.00035 * 359.74840 * 22 21 20 24 24 C 1.38230 * 120.00290 * 359.97438 * 23 22 21 25 25 O 1.43745 * 109.63235 * 239.68359 * 2 1 3 26 26 H 1.08996 * 109.47147 * 301.13366 * 1 2 3 27 27 H 1.08996 * 109.47336 * 61.13829 * 1 2 3 28 28 H 1.09006 * 109.46848 * 181.13493 * 1 2 3 29 29 H 1.09004 * 109.47153 * 178.86156 * 3 2 1 30 30 H 1.08995 * 109.46891 * 298.86456 * 3 2 1 31 31 H 1.09000 * 109.46957 * 58.86589 * 3 2 1 32 32 H 1.09004 * 110.69506 * 96.96157 * 5 4 2 33 33 H 1.08996 * 110.69219 * 219.99355 * 5 4 2 34 34 H 1.09002 * 109.46599 * 299.99625 * 8 6 5 35 35 H 1.09002 * 109.47332 * 59.99638 * 8 6 5 36 36 H 0.96997 * 119.99155 * 180.02562 * 13 12 10 37 37 H 1.08997 * 109.47234 * 204.98956 * 18 9 8 38 38 H 1.09005 * 109.47126 * 324.98383 * 18 9 8 39 39 H 1.08000 * 120.00121 * 359.97438 * 20 19 18 40 40 H 1.08004 * 119.99555 * 180.22532 * 21 20 19 41 41 H 1.08002 * 119.99438 * 179.72358 * 22 21 20 42 42 H 1.08001 * 119.99772 * 179.97438 * 23 22 21 43 43 H 1.07990 * 120.00268 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 8 2.0117 -0.6816 1.1657 5 6 2.7886 -1.8087 0.7126 6 6 2.2664 -2.0436 -0.7268 7 1 1.3469 -2.6290 -0.7176 8 6 3.3329 -2.7164 -1.5934 9 7 2.8052 -2.9231 -2.9444 10 6 2.9682 -1.9545 -3.8987 11 1 2.8469 -0.9136 -3.6377 12 6 3.2893 -2.3108 -5.2013 13 7 3.0878 -1.4597 -6.1849 14 14 4.0072 -3.9979 -5.5582 15 1 2.9181 -4.9250 -5.9575 16 1 4.9961 -3.8918 -6.6610 17 1 4.6783 -4.5181 -4.3399 18 6 2.1035 -4.1659 -3.2744 19 6 0.6534 -4.0433 -2.8826 20 6 0.2251 -4.5239 -1.6593 21 6 -1.1041 -4.4071 -1.2979 22 6 -2.0068 -3.8191 -2.1641 23 6 -1.5793 -3.3432 -3.3896 24 6 -0.2491 -3.4549 -3.7486 25 8 2.0130 -0.6834 -1.1687 26 1 -0.3633 0.5313 0.8796 27 1 -0.3634 0.4960 -0.9000 28 1 -0.3633 -1.0275 0.0204 29 1 3.1307 1.4417 0.0204 30 1 1.6945 1.9503 -0.9000 31 1 1.6613 1.9621 0.8796 32 1 3.8510 -1.5650 0.7021 33 1 2.6012 -2.6818 1.3377 34 1 4.2164 -2.0799 -1.6414 35 1 3.6015 -3.6786 -1.1574 36 1 3.3118 -1.7088 -7.0952 37 1 2.1759 -4.3505 -4.3462 38 1 2.5577 -4.9949 -2.7316 39 1 0.9294 -4.9876 -0.9846 40 1 -1.4381 -4.7793 -0.3406 41 1 -3.0460 -3.7318 -1.8835 42 1 -2.2846 -2.8842 -4.0665 43 1 0.0848 -3.0835 -4.7061 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207931093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:28 Heat of formation + Delta-G solvation = -39.337932 kcal Electronic energy + Delta-G solvation = -24942.537030 eV Core-core repulsion = 21567.675248 eV Total energy + Delta-G solvation = -3374.861781 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.11961 -38.75512 -36.03431 -34.36090 -32.90980 -31.81608 -30.78741 -30.37828 -28.94533 -27.17035 -25.81954 -25.37175 -22.31850 -21.99878 -21.02849 -20.67192 -20.31571 -17.25431 -16.79077 -15.99260 -15.93210 -15.34158 -15.08986 -14.68098 -14.53110 -14.26876 -13.79139 -13.38031 -13.15367 -12.96571 -12.89192 -12.65142 -12.34919 -12.28152 -12.12500 -11.97079 -11.86640 -11.77310 -11.42857 -11.36133 -11.07335 -10.83715 -10.65054 -10.54365 -10.31822 -9.89886 -9.71189 -9.65084 -9.22917 -8.56076 -8.37684 -8.13791 -6.85953 -5.98799 -3.46222 1.87697 1.94039 3.27592 3.44029 3.47000 3.78849 4.26181 4.38750 4.50072 4.79930 5.13520 5.19903 5.24573 5.30873 5.35858 5.38400 5.41341 5.47357 5.56148 5.64925 5.72358 5.78223 5.84064 5.93845 5.94985 5.98240 6.03969 6.05979 6.18643 6.21199 6.33588 6.35982 6.43696 6.52727 6.57077 6.63360 6.67649 6.93048 7.04427 7.31597 7.55967 7.60939 8.04862 8.45445 8.98101 9.68811 10.06015 11.15777 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012386 B = 0.007839 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.096621 B = 3571.101442 C = 4688.009572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.243 3.757 3 C -0.150 4.150 4 O -0.389 6.389 5 C 0.022 3.978 6 C 0.027 3.973 7 H 0.082 0.918 8 C 0.156 3.844 9 N -0.587 5.587 10 C -0.256 4.256 11 H 0.087 0.913 12 C 0.037 3.963 13 N -0.898 5.898 14 Si 0.873 3.127 15 H -0.286 1.286 16 H -0.301 1.301 17 H -0.268 1.268 18 C 0.162 3.838 19 C -0.078 4.078 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.123 4.123 24 C -0.090 4.090 25 O -0.338 6.338 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.263 0.737 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 -3.120 11.939 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.166 3.834 3 C -0.208 4.208 4 O -0.310 6.310 5 C -0.055 4.055 6 C -0.032 4.032 7 H 0.100 0.900 8 C 0.028 3.972 9 N -0.306 5.306 10 C -0.385 4.385 11 H 0.104 0.896 12 C -0.163 4.163 13 N -0.538 5.538 14 Si 0.703 3.297 15 H -0.214 1.214 16 H -0.229 1.229 17 H -0.193 1.193 18 C 0.037 3.963 19 C -0.081 4.081 20 C -0.145 4.145 21 C -0.148 4.148 22 C -0.156 4.156 23 C -0.141 4.141 24 C -0.108 4.108 25 O -0.258 6.258 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.181 -2.901 11.711 13.131 hybrid contribution 0.143 -0.931 -0.271 0.981 sum -5.038 -3.833 11.440 13.075 Atomic orbital electron populations 1.22310 0.94643 1.02918 1.02402 1.23322 0.92596 0.91515 0.75940 1.22018 1.02252 0.93995 1.02497 1.88791 1.69578 1.42234 1.30439 1.24198 0.96327 0.89063 0.95889 1.25052 1.00920 0.85282 0.91995 0.90023 1.20906 0.93538 0.97306 0.85408 1.44008 1.60887 1.17874 1.07862 1.18866 1.42337 0.89114 0.88156 0.89577 1.25541 0.97880 0.96795 0.96127 1.69850 1.48309 1.36239 0.99443 0.86976 0.79381 0.85717 0.77622 1.21378 1.22852 1.19280 1.20398 0.86876 0.89302 0.99754 1.20917 0.97660 0.95694 0.93782 1.20940 0.95451 1.01420 0.96644 1.20954 0.93779 1.00948 0.99112 1.20937 0.98869 1.00881 0.94914 1.21111 0.96166 1.00187 0.96619 1.21161 0.92358 0.96985 1.00340 1.89567 1.85348 1.21439 1.29446 0.91782 0.90817 0.92128 0.91703 0.90764 0.91416 0.91037 0.89315 0.91252 0.92618 0.92732 0.91424 0.93551 0.87128 0.87182 0.87199 0.86880 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 9.19 37.16 0.34 -2.19 16 2 C 0.24 4.11 1.47 -26.73 -0.04 4.07 16 3 C -0.15 -2.23 9.24 37.16 0.34 -1.88 16 4 O -0.39 -6.41 10.87 -59.04 -0.64 -7.05 16 5 C 0.02 0.33 7.53 38.17 0.29 0.62 16 6 C 0.03 0.49 3.66 -25.72 -0.09 0.39 16 7 H 0.08 1.49 5.56 -51.93 -0.29 1.20 16 8 C 0.16 2.92 5.50 -4.04 -0.02 2.90 16 9 N -0.59 -13.17 2.02 -174.60 -0.35 -13.53 16 10 C -0.26 -6.88 9.69 -15.06 -0.15 -7.03 16 11 H 0.09 2.62 7.64 -52.49 -0.40 2.22 16 12 C 0.04 1.03 5.31 -17.43 -0.09 0.93 16 13 N -0.90 -26.67 13.97 55.49 0.78 -25.90 16 14 Si 0.87 21.34 24.95 -169.99 -4.24 17.10 16 15 H -0.29 -6.82 6.73 56.52 0.38 -6.44 16 16 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 C 0.16 3.36 4.45 -5.19 -0.02 3.33 16 19 C -0.08 -1.48 4.97 -104.62 -0.52 -2.00 16 20 C -0.13 -2.04 7.73 -39.58 -0.31 -2.35 16 21 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 22 C -0.14 -2.07 10.05 -39.58 -0.40 -2.47 16 23 C -0.12 -2.07 10.05 -39.59 -0.40 -2.46 16 24 C -0.09 -1.77 9.72 -39.59 -0.38 -2.15 16 25 O -0.34 -6.85 10.11 -59.04 -0.60 -7.45 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 35 H 0.06 0.89 7.94 -51.93 -0.41 0.47 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.07 1.55 3.68 -51.93 -0.19 1.36 16 38 H 0.05 0.85 7.87 -51.93 -0.41 0.44 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 41 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.13 2.73 8.06 -52.49 -0.42 2.31 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -30.40 345.82 -8.46 -38.86 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.77 Total: 5.35 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -1.85 Total: -12.61 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.42 Total: -39.42 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -1.24 Total: -14.50 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.24 Total: 17.10 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.40 -8.46 -38.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207931093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.476 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds