Wall clock time and date at job start Tue Mar 31 2020 07:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.50441 * 2 1 4 4 O 1.43365 * 109.63094 * 120.31552 * 2 1 3 5 5 C 1.44197 * 107.28780 * 119.21386 * 4 2 1 6 6 C 1.54910 * 103.23007 * 338.47705 * 5 4 2 7 7 H 1.09006 * 110.97580 * 277.53868 * 6 5 4 8 8 C 1.53001 * 110.97854 * 153.75820 * 6 5 4 9 9 N 1.46503 * 109.47067 * 179.97438 * 8 6 5 10 10 C 1.36940 * 119.99779 * 90.00180 * 9 8 6 11 11 H 1.08000 * 119.99869 * 319.26168 * 10 9 8 12 12 C 1.38811 * 119.99701 * 139.26380 * 10 9 8 13 13 N 1.31625 * 119.99457 * 161.17244 * 12 10 9 14 14 Si 1.86795 * 120.00199 * 341.17608 * 12 10 9 15 15 H 1.48496 * 109.47266 * 95.35581 * 14 12 10 16 16 H 1.48497 * 109.47064 * 215.35675 * 14 12 10 17 17 H 1.48499 * 109.46968 * 335.35554 * 14 12 10 18 18 C 1.46496 * 119.99940 * 269.99616 * 9 8 6 19 19 C 1.50702 * 109.47041 * 84.98338 * 18 9 8 20 20 C 1.38235 * 119.99846 * 264.56199 * 19 18 9 21 21 C 1.38239 * 119.99503 * 179.76673 * 20 19 18 22 22 C 1.38234 * 119.99870 * 0.50553 * 21 20 19 23 23 C 1.38234 * 120.00035 * 359.74840 * 22 21 20 24 24 C 1.38230 * 120.00290 * 359.97438 * 23 22 21 25 25 O 1.43745 * 109.63235 * 239.68359 * 2 1 3 26 26 H 1.08996 * 109.47147 * 301.13366 * 1 2 3 27 27 H 1.08996 * 109.47336 * 61.13829 * 1 2 3 28 28 H 1.09006 * 109.46848 * 181.13493 * 1 2 3 29 29 H 1.09004 * 109.47153 * 178.86156 * 3 2 1 30 30 H 1.08995 * 109.46891 * 298.86456 * 3 2 1 31 31 H 1.09000 * 109.46957 * 58.86589 * 3 2 1 32 32 H 1.09004 * 110.69506 * 96.96157 * 5 4 2 33 33 H 1.08996 * 110.69219 * 219.99355 * 5 4 2 34 34 H 1.09002 * 109.46599 * 299.99625 * 8 6 5 35 35 H 1.09002 * 109.47332 * 59.99638 * 8 6 5 36 36 H 0.96997 * 119.99155 * 180.02562 * 13 12 10 37 37 H 1.08997 * 109.47234 * 204.98956 * 18 9 8 38 38 H 1.09005 * 109.47126 * 324.98383 * 18 9 8 39 39 H 1.08000 * 120.00121 * 359.97438 * 20 19 18 40 40 H 1.08004 * 119.99555 * 180.22532 * 21 20 19 41 41 H 1.08002 * 119.99438 * 179.72358 * 22 21 20 42 42 H 1.08001 * 119.99772 * 179.97438 * 23 22 21 43 43 H 1.07990 * 120.00268 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 8 2.0117 -0.6816 1.1657 5 6 2.7886 -1.8087 0.7126 6 6 2.2664 -2.0436 -0.7268 7 1 1.3469 -2.6290 -0.7176 8 6 3.3329 -2.7164 -1.5934 9 7 2.8052 -2.9231 -2.9444 10 6 2.9682 -1.9545 -3.8987 11 1 2.8469 -0.9136 -3.6377 12 6 3.2893 -2.3108 -5.2013 13 7 3.0878 -1.4597 -6.1849 14 14 4.0072 -3.9979 -5.5582 15 1 2.9181 -4.9250 -5.9575 16 1 4.9961 -3.8918 -6.6610 17 1 4.6783 -4.5181 -4.3399 18 6 2.1035 -4.1659 -3.2744 19 6 0.6534 -4.0433 -2.8826 20 6 0.2251 -4.5239 -1.6593 21 6 -1.1041 -4.4071 -1.2979 22 6 -2.0068 -3.8191 -2.1641 23 6 -1.5793 -3.3432 -3.3896 24 6 -0.2491 -3.4549 -3.7486 25 8 2.0130 -0.6834 -1.1687 26 1 -0.3633 0.5313 0.8796 27 1 -0.3634 0.4960 -0.9000 28 1 -0.3633 -1.0275 0.0204 29 1 3.1307 1.4417 0.0204 30 1 1.6945 1.9503 -0.9000 31 1 1.6613 1.9621 0.8796 32 1 3.8510 -1.5650 0.7021 33 1 2.6012 -2.6818 1.3377 34 1 4.2164 -2.0799 -1.6414 35 1 3.6015 -3.6786 -1.1574 36 1 3.3118 -1.7088 -7.0952 37 1 2.1759 -4.3505 -4.3462 38 1 2.5577 -4.9949 -2.7316 39 1 0.9294 -4.9876 -0.9846 40 1 -1.4381 -4.7793 -0.3406 41 1 -3.0460 -3.7318 -1.8835 42 1 -2.2846 -2.8842 -4.0665 43 1 0.0848 -3.0835 -4.7061 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207931093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:28 Heat of formation + Delta-G solvation = -57.412034 kcal Electronic energy + Delta-G solvation = -24943.320782 eV Core-core repulsion = 21567.675248 eV Total energy + Delta-G solvation = -3375.645533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.43621 -40.10763 -37.65399 -35.73937 -34.34775 -33.66173 -32.23680 -31.68671 -30.42113 -28.37415 -27.32421 -27.03510 -23.89979 -23.30647 -22.40097 -21.99785 -21.87305 -18.97041 -18.26236 -17.45414 -17.22307 -17.09861 -16.45863 -16.10288 -15.91616 -15.68157 -15.31172 -14.76049 -14.64723 -14.55901 -14.19257 -14.15478 -13.97529 -13.60703 -13.52875 -13.30184 -13.12538 -13.11170 -12.95277 -12.74117 -12.60063 -12.35223 -12.15209 -12.09800 -11.75814 -11.74337 -11.54146 -10.96380 -10.65304 -10.51859 -9.68077 -9.49864 -8.71158 -8.13545 -5.58069 0.57362 0.61980 1.31494 1.41426 1.51903 2.43621 2.54339 2.87603 3.10750 3.20470 3.38764 3.85277 3.93314 4.00096 4.03527 4.10218 4.14387 4.25300 4.30433 4.37918 4.44561 4.49932 4.55189 4.63453 4.66725 4.70994 4.75515 4.80832 4.85266 4.88682 4.90826 5.07809 5.14426 5.22227 5.24077 5.26085 5.27624 5.66372 5.71554 5.91738 6.00424 6.25455 6.32346 6.34741 7.01400 7.64759 8.05442 9.05689 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012386 B = 0.007839 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.096621 B = 3571.101442 C = 4688.009572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.235 3.765 3 C -0.149 4.149 4 O -0.393 6.393 5 C 0.028 3.972 6 C 0.028 3.972 7 H 0.081 0.919 8 C 0.151 3.849 9 N -0.597 5.597 10 C -0.233 4.233 11 H 0.035 0.965 12 C -0.021 4.021 13 N -0.952 5.952 14 Si 0.940 3.060 15 H -0.281 1.281 16 H -0.312 1.312 17 H -0.246 1.246 18 C 0.159 3.841 19 C -0.096 4.096 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.123 4.123 25 O -0.381 6.381 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.053 0.947 35 H 0.097 0.903 36 H 0.260 0.740 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.123 0.877 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 -5.506 15.724 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.158 3.842 3 C -0.206 4.206 4 O -0.314 6.314 5 C -0.049 4.049 6 C -0.031 4.031 7 H 0.098 0.902 8 C 0.025 3.975 9 N -0.318 5.318 10 C -0.363 4.363 11 H 0.053 0.947 12 C -0.217 4.217 13 N -0.597 5.597 14 Si 0.769 3.231 15 H -0.208 1.208 16 H -0.241 1.241 17 H -0.170 1.170 18 C 0.035 3.965 19 C -0.098 4.098 20 C -0.139 4.139 21 C -0.139 4.139 22 C -0.148 4.148 23 C -0.150 4.150 24 C -0.142 4.142 25 O -0.302 6.302 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.142 0.858 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.157 0.843 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.141 0.859 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.162 -5.317 15.553 17.554 hybrid contribution 0.319 -0.136 -1.338 1.382 sum -5.843 -5.453 14.215 16.307 Atomic orbital electron populations 1.22253 0.93584 1.02714 1.03065 1.23562 0.93470 0.91965 0.75214 1.22031 1.01863 0.93359 1.03348 1.88770 1.69906 1.42720 1.30021 1.24312 0.96445 0.89812 0.94335 1.24983 1.00418 0.84284 0.93412 0.90165 1.21109 0.93321 0.99195 0.83858 1.44031 1.62056 1.17308 1.08394 1.18508 1.40384 0.88216 0.89171 0.94719 1.26132 0.98925 1.00692 0.95937 1.70003 1.51075 1.38857 0.99758 0.85879 0.78218 0.81342 0.77652 1.20812 1.24090 1.16962 1.20406 0.88371 0.89088 0.98621 1.20761 0.96498 0.97308 0.95261 1.21196 0.96867 1.00485 0.95387 1.21421 0.92910 0.99282 1.00300 1.21346 1.00767 0.99115 0.93586 1.21280 0.95054 1.00526 0.98123 1.21021 0.94399 0.99333 0.99479 1.89560 1.85866 1.23015 1.31734 0.89279 0.91861 0.92772 0.92392 0.91546 0.88810 0.90345 0.85751 0.92849 0.88533 0.93146 0.94229 0.90265 0.84333 0.83257 0.83795 0.85870 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.62 9.19 71.98 0.66 -3.95 16 2 C 0.23 7.67 1.47 30.60 0.05 7.71 16 3 C -0.15 -4.32 9.24 71.98 0.66 -3.66 16 4 O -0.39 -11.87 10.87 -126.22 -1.37 -13.24 16 5 C 0.03 0.73 7.53 72.63 0.55 1.28 16 6 C 0.03 0.95 3.66 31.25 0.11 1.07 16 7 H 0.08 2.71 5.56 -2.38 -0.01 2.70 16 8 C 0.15 5.45 5.50 86.38 0.47 5.93 16 9 N -0.60 -26.87 2.02 -706.33 -1.43 -28.30 16 10 C -0.23 -13.14 9.69 84.03 0.81 -12.32 16 11 H 0.04 2.29 7.64 -2.91 -0.02 2.27 16 12 C -0.02 -1.24 5.31 84.86 0.45 -0.79 16 13 N -0.95 -60.38 13.97 21.65 0.30 -60.08 16 14 Si 0.94 45.71 24.95 68.60 1.71 47.42 16 15 H -0.28 -13.23 6.73 99.48 0.67 -12.56 16 16 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 17 H -0.25 -10.93 7.11 99.48 0.71 -10.22 16 18 C 0.16 6.47 4.45 85.63 0.38 6.85 16 19 C -0.10 -3.57 4.97 -19.87 -0.10 -3.67 16 20 C -0.12 -3.48 7.73 22.27 0.17 -3.30 16 21 C -0.12 -3.03 10.05 22.27 0.22 -2.80 16 22 C -0.13 -3.46 10.05 22.27 0.22 -3.23 16 23 C -0.13 -4.36 10.05 22.27 0.22 -4.14 16 24 C -0.12 -5.01 9.72 22.27 0.22 -4.80 16 25 O -0.38 -15.62 10.11 -126.22 -1.28 -16.90 16 26 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.08 1.97 8.04 -2.38 -0.02 1.95 16 33 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.05 2.07 8.04 -2.39 -0.02 2.06 16 35 H 0.10 2.68 7.94 -2.39 -0.02 2.67 16 36 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.04 1.82 3.68 -2.39 -0.01 1.81 16 38 H 0.08 2.65 7.87 -2.38 -0.02 2.63 16 39 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 40 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 41 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 42 H 0.12 3.67 8.06 -2.91 -0.02 3.64 16 43 H 0.08 3.94 8.06 -2.92 -0.02 3.91 16 Total: -1.00 -71.59 345.82 3.99 -67.60 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.94 Total: 23.34 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 5.11 Total: -19.84 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -1.13 Total: -88.37 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -2.65 Total: -30.14 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.71 Total: 47.42 kcal Total: -71.59 3.99 -67.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207931093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.187 kcal (2) G-P(sol) polarization free energy of solvation -71.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds