Wall clock time and date at job start Tue Mar 31 2020 06:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38159 * 120.03177 * 2 1 4 4 C 1.38248 * 120.05896 * 179.97438 * 3 2 1 5 5 C 1.38281 * 120.10986 * 0.02706 * 4 3 2 6 6 C 1.38126 * 120.05692 * 359.67803 * 5 4 3 7 7 C 1.38712 * 120.02371 * 179.97438 * 2 1 3 8 8 O 1.35896 * 120.05906 * 0.02666 * 7 2 1 9 9 C 1.42905 * 117.00039 * 179.97438 * 8 7 2 10 10 C 1.52999 * 109.46728 * 179.97438 * 9 8 7 11 11 O 1.42904 * 109.47221 * 65.00652 * 10 9 8 12 12 C 1.42898 * 113.99912 * 179.97438 * 11 10 9 13 13 H 1.08996 * 110.89038 * 327.57243 * 12 11 10 14 14 C 1.55155 * 111.00184 * 203.64762 * 12 11 10 15 15 C 1.54332 * 102.94020 * 206.42366 * 14 12 11 16 16 N 1.47015 * 107.27276 * 22.19428 * 15 14 12 17 17 C 1.36937 * 125.65241 * 181.02159 * 16 15 14 18 18 H 1.08000 * 120.00505 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99414 * 0.04111 * 17 16 15 20 20 N 1.31614 * 120.00008 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99714 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47197 * 89.99853 * 21 19 17 23 23 H 1.48501 * 109.47043 * 210.00083 * 21 19 17 24 24 H 1.48498 * 109.47022 * 329.99835 * 21 19 17 25 25 C 1.47436 * 108.70355 * 1.05926 * 16 15 14 26 26 H 1.08998 * 109.47170 * 270.02290 * 1 2 3 27 27 H 1.09006 * 109.46508 * 30.02192 * 1 2 3 28 28 H 1.09003 * 109.46993 * 150.01651 * 1 2 3 29 29 H 1.07999 * 119.97237 * 359.95888 * 3 2 1 30 30 H 1.08002 * 119.94351 * 179.97438 * 4 3 2 31 31 H 1.07997 * 119.97421 * 179.97438 * 5 4 3 32 32 H 1.07995 * 120.03178 * 180.32399 * 6 5 4 33 33 H 1.09000 * 109.47187 * 300.00222 * 9 8 7 34 34 H 1.09001 * 109.46558 * 60.00270 * 9 8 7 35 35 H 1.09000 * 109.46738 * 185.00163 * 10 9 8 36 36 H 1.08994 * 109.47465 * 305.00250 * 10 9 8 37 37 H 1.09003 * 110.71786 * 324.78213 * 14 12 11 38 38 H 1.08995 * 110.72473 * 88.05916 * 14 12 11 39 39 H 1.08991 * 109.88069 * 262.77297 * 15 14 12 40 40 H 1.09003 * 110.00968 * 141.68075 * 15 14 12 41 41 H 0.97002 * 119.99750 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.36472 * 217.03606 * 25 16 15 43 43 H 1.08993 * 110.45722 * 94.75555 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5810 1.1968 0.0005 5 6 4.2752 0.0009 0.0005 6 6 3.5887 -1.1977 0.0067 7 6 2.2011 -1.2010 0.0005 8 8 1.5233 -2.3789 0.0005 9 6 2.3033 -3.5763 0.0005 10 6 1.3730 -4.7909 0.0011 11 8 0.6310 -4.8232 -1.2197 12 6 -0.2727 -5.9255 -1.3216 13 1 0.1210 -6.8000 -0.8037 14 6 -0.5869 -6.2516 -2.8056 15 6 -1.9828 -6.9052 -2.7278 16 7 -2.6039 -6.4599 -1.4719 17 6 -3.8409 -6.8320 -1.0174 18 1 -4.2091 -6.4475 -0.0777 19 6 -4.6214 -7.7036 -1.7644 20 7 -4.1722 -8.1728 -2.9091 21 14 -6.3086 -8.2118 -1.1441 22 1 -7.3293 -7.2589 -1.6493 23 1 -6.6238 -9.5789 -1.6307 24 1 -6.3138 -8.2015 0.3408 25 6 -1.6747 -5.5457 -0.7831 26 1 -0.3633 0.0004 1.0276 27 1 -0.3632 0.8899 -0.5142 28 1 -0.3633 -0.8902 -0.5136 29 1 1.6586 2.1314 -0.0007 30 1 4.1196 2.1329 0.0001 31 1 5.3552 0.0039 0.0005 32 1 4.1313 -2.1314 0.0119 33 1 2.9322 -3.6002 -0.8894 34 1 2.9321 -3.6002 0.8906 35 1 1.9649 -5.7018 0.0907 36 1 0.6844 -4.7207 0.8431 37 1 -0.6207 -5.3399 -3.4020 38 1 0.1445 -6.9513 -3.2099 39 1 -1.8843 -7.9907 -2.7282 40 1 -2.5909 -6.5880 -3.5749 41 1 -4.7175 -8.7822 -3.4308 42 1 -1.7212 -5.6990 0.2951 43 1 -1.9075 -4.5096 -1.0287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224319871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:00 Heat of formation + Delta-G solvation = -34.856019 kcal Electronic energy + Delta-G solvation = -22783.775602 eV Core-core repulsion = 19409.108171 eV Total energy + Delta-G solvation = -3374.667431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.33621 -38.45717 -37.49551 -35.81931 -32.96780 -32.25590 -30.70573 -29.64113 -28.94086 -26.96967 -26.78369 -24.41932 -23.66983 -21.81368 -21.34744 -20.30804 -20.01701 -18.24394 -17.07143 -16.78949 -16.17411 -15.83330 -15.52538 -14.96495 -14.62942 -14.39907 -14.31937 -13.91612 -13.52168 -13.27474 -13.18591 -12.77031 -12.34317 -12.24555 -12.19412 -12.11227 -11.76165 -11.48779 -11.38776 -11.07354 -10.97415 -10.92282 -10.79156 -10.68148 -10.17802 -10.08379 -9.76563 -9.69520 -9.08930 -8.98633 -8.58123 -8.21205 -6.81609 -5.69535 -3.03297 1.16037 1.31069 3.09892 3.41669 3.46193 3.48284 3.60556 3.81738 4.52589 4.60643 4.65037 4.85164 4.89728 5.00479 5.13151 5.15722 5.22775 5.32216 5.44015 5.44933 5.50254 5.57263 5.60344 5.68925 5.71102 5.74940 5.78431 5.87684 6.16988 6.19266 6.28733 6.32057 6.40106 6.49528 6.55751 6.66562 6.70721 6.77110 7.33888 7.57278 7.60816 7.63504 7.84279 8.27401 9.23458 9.83601 10.49551 11.42304 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027786 B = 0.002871 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.441795 B = 9751.901965 C =10327.980294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.116 4.116 3 C -0.085 4.085 4 C -0.161 4.161 5 C -0.088 4.088 6 C -0.210 4.210 7 C 0.134 3.866 8 O -0.298 6.298 9 C 0.064 3.936 10 C 0.063 3.937 11 O -0.373 6.373 12 C 0.071 3.929 13 H 0.066 0.934 14 C -0.137 4.137 15 C 0.178 3.822 16 N -0.605 5.605 17 C -0.227 4.227 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.119 3.881 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.252 0.748 42 H 0.036 0.964 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.617 14.199 6.243 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.117 4.117 3 C -0.103 4.103 4 C -0.179 4.179 5 C -0.106 4.106 6 C -0.228 4.228 7 C 0.088 3.912 8 O -0.211 6.211 9 C -0.012 4.012 10 C -0.014 4.014 11 O -0.291 6.291 12 C 0.013 3.987 13 H 0.084 0.916 14 C -0.175 4.175 15 C 0.054 3.946 16 N -0.332 5.332 17 C -0.355 4.355 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.571 5.571 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.008 4.008 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 17.248 14.138 6.026 23.101 hybrid contribution -0.560 -0.577 0.475 0.934 sum 16.688 13.561 6.501 22.464 Atomic orbital electron populations 1.20647 0.90254 1.03235 1.02367 1.19351 0.96809 0.90343 1.05163 1.20893 0.94113 0.96791 0.98520 1.21002 0.94237 0.97971 1.04674 1.20892 0.99606 0.91943 0.98203 1.21254 0.93023 0.99446 1.09107 1.18915 0.90367 0.86056 0.95873 1.86200 1.35172 1.11813 1.87893 1.22895 0.93941 0.82634 1.01699 1.22476 0.94523 0.95086 0.89338 1.87946 1.55789 1.48957 1.36421 1.23435 0.89550 0.87394 0.98300 0.91615 1.22971 0.99837 1.00693 0.94006 1.21166 0.86940 0.97241 0.89271 1.44364 1.15658 1.52299 1.20915 1.19070 0.90656 1.22170 1.03631 0.90407 1.24815 0.98854 0.99823 0.97056 1.69957 1.36991 1.36149 1.13991 0.86097 0.83926 0.77678 0.77938 1.21566 1.21668 1.20701 1.21922 0.88875 0.94404 0.95586 0.91413 0.91801 0.90482 0.85552 0.86142 0.86067 0.85568 0.91211 0.90870 0.91384 0.92151 0.91463 0.91885 0.93398 0.93551 0.93729 0.94584 0.95327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.79 36.01 0.35 -0.88 16 2 C -0.12 -1.39 5.89 -104.47 -0.62 -2.01 16 3 C -0.09 -0.85 9.70 -39.61 -0.38 -1.23 16 4 C -0.16 -1.47 10.04 -39.56 -0.40 -1.87 16 5 C -0.09 -0.82 10.04 -39.61 -0.40 -1.22 16 6 C -0.21 -2.23 9.04 -39.43 -0.36 -2.58 16 7 C 0.13 1.70 6.66 -39.21 -0.26 1.44 16 8 O -0.30 -4.14 9.15 -24.26 -0.22 -4.36 16 9 C 0.06 0.71 5.12 37.16 0.19 0.90 16 10 C 0.06 0.81 6.20 37.16 0.23 1.04 16 11 O -0.37 -6.35 10.12 -40.08 -0.41 -6.76 16 12 C 0.07 1.35 3.49 -24.58 -0.09 1.26 16 13 H 0.07 1.17 7.90 -51.93 -0.41 0.76 16 14 C -0.14 -2.72 6.69 -24.89 -0.17 -2.89 16 15 C 0.18 4.47 5.38 -3.06 -0.02 4.45 16 16 N -0.60 -16.04 3.39 -170.07 -0.58 -16.62 16 17 C -0.23 -6.49 10.28 -15.06 -0.15 -6.64 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -27.51 10.31 55.49 0.57 -26.94 16 21 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.12 2.63 6.97 -2.52 -0.02 2.61 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 28 H 0.08 1.03 7.53 -51.93 -0.39 0.64 16 29 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 30 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 31 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 33 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 34 H 0.07 0.62 7.65 -51.93 -0.40 0.22 16 35 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 1.30 7.38 -51.93 -0.38 0.91 16 40 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -32.42 351.91 -9.42 -41.84 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.89 Total: -1.82 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -2.18 Total: -8.00 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.01 Total: -43.56 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.63 Total: -11.12 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.42 -9.42 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224319871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.982 kcal (2) G-P(sol) polarization free energy of solvation -32.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds