Wall clock time and date at job start Tue Mar 31 2020 06:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38159 * 120.03177 * 2 1 4 4 C 1.38248 * 120.05896 * 179.97438 * 3 2 1 5 5 C 1.38281 * 120.10986 * 0.02706 * 4 3 2 6 6 C 1.38126 * 120.05692 * 359.67803 * 5 4 3 7 7 C 1.38712 * 120.02371 * 179.97438 * 2 1 3 8 8 O 1.35896 * 120.05906 * 0.02666 * 7 2 1 9 9 C 1.42905 * 117.00039 * 179.97438 * 8 7 2 10 10 C 1.52999 * 109.46728 * 179.97438 * 9 8 7 11 11 O 1.42904 * 109.47221 * 65.00652 * 10 9 8 12 12 C 1.42898 * 113.99912 * 179.97438 * 11 10 9 13 13 H 1.08996 * 110.89038 * 327.57243 * 12 11 10 14 14 C 1.55155 * 111.00184 * 203.64762 * 12 11 10 15 15 C 1.54332 * 102.94020 * 206.42366 * 14 12 11 16 16 N 1.47015 * 107.27276 * 22.19428 * 15 14 12 17 17 C 1.36937 * 125.65241 * 181.02159 * 16 15 14 18 18 H 1.08000 * 120.00505 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99414 * 0.04111 * 17 16 15 20 20 N 1.31614 * 120.00008 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99714 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47197 * 89.99853 * 21 19 17 23 23 H 1.48501 * 109.47043 * 210.00083 * 21 19 17 24 24 H 1.48498 * 109.47022 * 329.99835 * 21 19 17 25 25 C 1.47436 * 108.70355 * 1.05926 * 16 15 14 26 26 H 1.08998 * 109.47170 * 270.02290 * 1 2 3 27 27 H 1.09006 * 109.46508 * 30.02192 * 1 2 3 28 28 H 1.09003 * 109.46993 * 150.01651 * 1 2 3 29 29 H 1.07999 * 119.97237 * 359.95888 * 3 2 1 30 30 H 1.08002 * 119.94351 * 179.97438 * 4 3 2 31 31 H 1.07997 * 119.97421 * 179.97438 * 5 4 3 32 32 H 1.07995 * 120.03178 * 180.32399 * 6 5 4 33 33 H 1.09000 * 109.47187 * 300.00222 * 9 8 7 34 34 H 1.09001 * 109.46558 * 60.00270 * 9 8 7 35 35 H 1.09000 * 109.46738 * 185.00163 * 10 9 8 36 36 H 1.08994 * 109.47465 * 305.00250 * 10 9 8 37 37 H 1.09003 * 110.71786 * 324.78213 * 14 12 11 38 38 H 1.08995 * 110.72473 * 88.05916 * 14 12 11 39 39 H 1.08991 * 109.88069 * 262.77297 * 15 14 12 40 40 H 1.09003 * 110.00968 * 141.68075 * 15 14 12 41 41 H 0.97002 * 119.99750 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.36472 * 217.03606 * 25 16 15 43 43 H 1.08993 * 110.45722 * 94.75555 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5810 1.1968 0.0005 5 6 4.2752 0.0009 0.0005 6 6 3.5887 -1.1977 0.0067 7 6 2.2011 -1.2010 0.0005 8 8 1.5233 -2.3789 0.0005 9 6 2.3033 -3.5763 0.0005 10 6 1.3730 -4.7909 0.0011 11 8 0.6310 -4.8232 -1.2197 12 6 -0.2727 -5.9255 -1.3216 13 1 0.1210 -6.8000 -0.8037 14 6 -0.5869 -6.2516 -2.8056 15 6 -1.9828 -6.9052 -2.7278 16 7 -2.6039 -6.4599 -1.4719 17 6 -3.8409 -6.8320 -1.0174 18 1 -4.2091 -6.4475 -0.0777 19 6 -4.6214 -7.7036 -1.7644 20 7 -4.1722 -8.1728 -2.9091 21 14 -6.3086 -8.2118 -1.1441 22 1 -7.3293 -7.2589 -1.6493 23 1 -6.6238 -9.5789 -1.6307 24 1 -6.3138 -8.2015 0.3408 25 6 -1.6747 -5.5457 -0.7831 26 1 -0.3633 0.0004 1.0276 27 1 -0.3632 0.8899 -0.5142 28 1 -0.3633 -0.8902 -0.5136 29 1 1.6586 2.1314 -0.0007 30 1 4.1196 2.1329 0.0001 31 1 5.3552 0.0039 0.0005 32 1 4.1313 -2.1314 0.0119 33 1 2.9322 -3.6002 -0.8894 34 1 2.9321 -3.6002 0.8906 35 1 1.9649 -5.7018 0.0907 36 1 0.6844 -4.7207 0.8431 37 1 -0.6207 -5.3399 -3.4020 38 1 0.1445 -6.9513 -3.2099 39 1 -1.8843 -7.9907 -2.7282 40 1 -2.5909 -6.5880 -3.5749 41 1 -4.7175 -8.7822 -3.4308 42 1 -1.7212 -5.6990 0.2951 43 1 -1.9075 -4.5096 -1.0287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224319871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:00 Heat of formation + Delta-G solvation = -53.577573 kcal Electronic energy + Delta-G solvation = -22784.587430 eV Core-core repulsion = 19409.108171 eV Total energy + Delta-G solvation = -3375.479259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.16266 -39.89991 -38.49054 -37.38576 -34.27808 -33.72202 -31.80674 -30.98760 -30.30071 -28.73803 -27.61965 -26.37579 -24.64464 -22.64066 -22.23014 -22.02264 -21.80747 -19.07041 -18.99439 -18.16639 -17.07219 -16.80193 -16.60372 -16.49806 -16.25628 -15.65557 -15.38960 -15.17002 -14.98143 -14.36069 -14.16218 -13.98625 -13.94529 -13.78008 -13.49460 -13.16416 -13.01436 -12.90162 -12.78582 -12.49438 -12.30617 -12.17652 -12.03924 -12.00095 -11.90060 -11.77672 -11.62996 -11.43117 -10.73987 -10.49360 -9.74150 -9.02750 -8.95132 -7.87640 -5.24794 0.40580 0.53435 1.45104 1.47831 1.56480 2.27636 2.43587 2.61885 2.84812 3.30876 3.71192 3.79168 3.85586 3.90203 4.00992 4.08179 4.14888 4.16554 4.23740 4.32171 4.40811 4.43719 4.49052 4.61921 4.66444 4.74410 4.78372 4.79454 4.80316 4.94393 5.00684 5.02476 5.05921 5.32984 5.41119 5.44774 5.55652 5.60548 5.63378 5.70601 5.93743 6.13473 6.30249 6.53002 7.06524 7.72214 8.37045 9.22938 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027786 B = 0.002871 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.441795 B = 9751.901965 C =10327.980294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.143 4.143 3 C -0.090 4.090 4 C -0.161 4.161 5 C -0.091 4.091 6 C -0.216 4.216 7 C 0.106 3.894 8 O -0.327 6.327 9 C 0.063 3.937 10 C 0.054 3.946 11 O -0.384 6.384 12 C 0.092 3.908 13 H 0.084 0.916 14 C -0.124 4.124 15 C 0.186 3.814 16 N -0.626 5.626 17 C -0.247 4.247 18 H 0.082 0.918 19 C -0.066 4.066 20 N -0.952 5.952 21 Si 0.983 3.017 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.267 1.267 25 C 0.115 3.885 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.022 0.978 40 H 0.009 0.991 41 H 0.249 0.751 42 H 0.044 0.956 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.670 15.121 7.412 25.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.144 4.144 3 C -0.108 4.108 4 C -0.179 4.179 5 C -0.109 4.109 6 C -0.234 4.234 7 C 0.061 3.939 8 O -0.242 6.242 9 C -0.012 4.012 10 C -0.022 4.022 11 O -0.303 6.303 12 C 0.033 3.967 13 H 0.102 0.898 14 C -0.163 4.163 15 C 0.061 3.939 16 N -0.354 5.354 17 C -0.376 4.376 18 H 0.100 0.900 19 C -0.259 4.259 20 N -0.600 5.600 21 Si 0.810 3.190 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.192 1.192 25 C -0.011 4.011 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.164 0.836 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.040 0.960 40 H 0.027 0.973 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 19.330 15.087 7.218 25.562 hybrid contribution -1.130 -0.755 0.144 1.367 sum 18.200 14.333 7.363 24.308 Atomic orbital electron populations 1.20582 0.90696 1.02516 1.02279 1.19602 0.96948 0.91253 1.06548 1.21183 0.94875 0.96815 0.97902 1.21396 0.94020 0.99220 1.03269 1.21295 1.01100 0.91487 0.96996 1.21512 0.92281 1.00882 1.08741 1.19209 0.91441 0.85793 0.97485 1.86151 1.36669 1.12845 1.88493 1.23029 0.93517 0.81219 1.03412 1.22824 0.94689 0.97416 0.87302 1.87931 1.55565 1.48160 1.38670 1.23081 0.88196 0.88470 0.96924 0.89819 1.22801 0.97205 1.00903 0.95354 1.20922 0.89261 0.95997 0.87682 1.44675 1.15996 1.52869 1.21827 1.19469 0.91920 1.22263 1.03929 0.90033 1.25713 1.02728 1.00072 0.97350 1.70176 1.38205 1.36575 1.15070 0.85018 0.79022 0.76872 0.78041 1.21318 1.21704 1.19208 1.22053 0.90366 0.92834 0.95834 0.91245 0.90293 0.93297 0.83628 0.83461 0.83323 0.83930 0.90626 0.87844 0.88312 0.92702 0.91464 0.88966 0.96010 0.97290 0.94187 0.93805 0.96646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.43 9.79 71.24 0.70 -1.74 16 2 C -0.14 -3.38 5.89 -19.77 -0.12 -3.50 16 3 C -0.09 -1.65 9.70 22.25 0.22 -1.43 16 4 C -0.16 -2.51 10.04 22.28 0.22 -2.29 16 5 C -0.09 -1.44 10.04 22.25 0.22 -1.22 16 6 C -0.22 -4.16 9.04 22.37 0.20 -3.96 16 7 C 0.11 2.63 6.66 22.51 0.15 2.78 16 8 O -0.33 -9.04 9.15 -87.75 -0.80 -9.84 16 9 C 0.06 1.29 5.12 71.98 0.37 1.66 16 10 C 0.05 1.28 6.20 71.98 0.45 1.72 16 11 O -0.38 -12.60 10.12 -144.35 -1.46 -14.06 16 12 C 0.09 3.36 3.49 31.99 0.11 3.47 16 13 H 0.08 2.78 7.90 -2.39 -0.02 2.76 16 14 C -0.12 -4.90 6.69 31.78 0.21 -4.69 16 15 C 0.19 9.61 5.38 86.73 0.47 10.08 16 16 N -0.63 -33.96 3.39 -691.96 -2.35 -36.31 16 17 C -0.25 -14.38 10.28 84.03 0.86 -13.52 16 18 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 19 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 20 N -0.95 -58.36 10.31 21.65 0.22 -58.14 16 21 Si 0.98 46.54 29.55 68.60 2.03 48.57 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 C 0.11 5.12 6.97 86.85 0.61 5.72 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 1.51 8.09 -2.38 -0.02 1.49 16 28 H 0.05 1.39 7.53 -2.39 -0.02 1.37 16 29 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 31 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.14 2.12 6.30 -2.91 -0.02 2.10 16 33 H 0.08 1.45 7.68 -2.39 -0.02 1.43 16 34 H 0.10 1.47 7.65 -2.39 -0.02 1.45 16 35 H 0.10 1.75 8.11 -2.39 -0.02 1.73 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.09 3.09 8.14 -2.39 -0.02 3.08 16 39 H 0.02 1.22 7.38 -2.39 -0.02 1.20 16 40 H 0.01 0.51 7.50 -2.39 -0.02 0.50 16 41 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 42 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -72.24 351.91 3.75 -68.49 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.97 Total: 11.55 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 5.14 Total: -10.27 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -2.13 Total: -94.45 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -2.26 Total: -23.90 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -72.24 3.75 -68.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224319871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.917 kcal (2) G-P(sol) polarization free energy of solvation -72.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds