Wall clock time and date at job start Tue Mar 31 2020 06:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38282 * 119.97546 * 2 1 4 4 C 1.38248 * 120.11486 * 180.02562 * 3 2 1 5 5 C 1.38171 * 120.05228 * 359.97438 * 4 3 2 6 6 C 1.38712 * 119.94497 * 0.02562 * 5 4 3 7 7 O 1.35896 * 120.05159 * 180.02562 * 6 5 4 8 8 C 1.42900 * 117.00558 * 0.02562 * 7 6 5 9 9 C 1.52996 * 109.47112 * 179.97438 * 8 7 6 10 10 O 1.42895 * 109.47194 * 64.99968 * 9 8 7 11 11 C 1.42900 * 114.00206 * 179.97438 * 10 9 8 12 12 H 1.09008 * 110.88137 * 32.42926 * 11 10 9 13 13 C 1.55154 * 111.03913 * 156.33029 * 11 10 9 14 14 C 1.54325 * 102.94303 * 153.59305 * 13 11 10 15 15 N 1.47290 * 107.30599 * 337.81911 * 14 13 11 16 16 C 1.36938 * 125.79079 * 178.92205 * 15 14 13 17 17 H 1.08005 * 119.99558 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00146 * 0.02562 * 16 15 14 19 19 N 1.31620 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47268 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47204 * 119.99715 * 20 18 16 23 23 H 1.48508 * 109.46889 * 239.99519 * 20 18 16 24 24 C 1.47425 * 108.55742 * 358.92448 * 15 14 13 25 25 C 1.38122 * 119.96873 * 180.25934 * 2 1 3 26 26 H 1.08992 * 109.47159 * 89.99791 * 1 2 3 27 27 H 1.09002 * 109.46891 * 209.99940 * 1 2 3 28 28 H 1.09000 * 109.46678 * 329.99543 * 1 2 3 29 29 H 1.08001 * 119.94558 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.97455 * 179.97438 * 4 3 2 31 31 H 1.07999 * 120.02155 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.46740 * 59.99740 * 8 7 6 33 33 H 1.09002 * 109.46698 * 300.00245 * 8 7 6 34 34 H 1.09001 * 109.47194 * 304.99516 * 9 8 7 35 35 H 1.09004 * 109.46825 * 184.99586 * 9 8 7 36 36 H 1.09002 * 110.72290 * 271.95991 * 13 11 10 37 37 H 1.08994 * 110.71922 * 35.05460 * 13 11 10 38 38 H 1.09004 * 109.88239 * 97.22707 * 14 13 11 39 39 H 1.08995 * 109.88239 * 218.23629 * 14 13 11 40 40 H 0.96999 * 120.00175 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.36696 * 265.26054 * 24 15 14 42 42 H 1.08995 * 110.36608 * 143.04891 * 24 15 14 43 43 H 1.07997 * 120.03282 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2012 -0.0005 5 6 4.2752 0.0069 -0.0005 6 6 3.5845 -1.1960 -0.0005 7 8 4.2658 -2.3719 0.0000 8 6 5.6927 -2.2951 0.0011 9 6 6.2794 -3.7081 0.0022 10 8 5.9372 -4.3669 -1.2188 11 6 6.4401 -5.7006 -1.3203 12 1 6.4796 -6.1766 -0.3405 13 6 5.5939 -6.5409 -2.3130 14 6 6.5963 -7.6054 -2.8065 15 7 7.9499 -7.0692 -2.5841 16 6 9.1237 -7.7147 -2.8684 17 1 10.0683 -7.2317 -2.6659 18 6 9.0996 -8.9897 -3.4167 19 7 7.9484 -9.5784 -3.6630 20 14 10.7008 -9.8703 -3.8038 21 1 11.8461 -8.9997 -3.4359 22 1 10.7704 -11.1347 -3.0281 23 1 10.7588 -10.1766 -5.2558 24 6 7.8303 -5.7195 -2.0033 25 6 2.1970 -1.1965 -0.0054 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6566 2.1324 0.0004 30 1 4.1177 2.1381 -0.0010 31 1 5.3552 0.0101 -0.0005 32 1 6.0271 -1.7624 0.8914 33 1 6.0285 -1.7624 -0.8886 34 1 5.8738 -4.2693 0.8440 35 1 7.3642 -3.6509 0.0925 36 1 4.7532 -7.0102 -1.8020 37 1 5.2444 -5.9234 -3.1404 38 1 6.4658 -8.5280 -2.2407 39 1 6.4409 -7.7969 -3.8683 40 1 7.9315 -10.4695 -4.0458 41 1 7.8782 -4.9636 -2.7872 42 1 8.6168 -5.5521 -1.2674 43 1 1.6570 -2.1318 -0.0101 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224407188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:04 Heat of formation + Delta-G solvation = -36.258082 kcal Electronic energy + Delta-G solvation = -22352.911444 eV Core-core repulsion = 18978.183215 eV Total energy + Delta-G solvation = -3374.728229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.29734 -38.49051 -37.68663 -35.83182 -32.72986 -32.31498 -31.08805 -29.50562 -28.86064 -27.22075 -26.91902 -24.37496 -23.25383 -22.68978 -20.97171 -20.31749 -20.03012 -18.05398 -17.00545 -16.79588 -16.33674 -16.08088 -15.62700 -14.78069 -14.64696 -14.48213 -14.25344 -13.87007 -13.84849 -13.41589 -13.25151 -12.94478 -12.41986 -12.34659 -12.19508 -12.01803 -11.77662 -11.69723 -11.40649 -11.15287 -11.01757 -10.90322 -10.84900 -10.61325 -10.18435 -10.06449 -9.76445 -9.71022 -9.09602 -8.98877 -8.60224 -8.32415 -6.83361 -5.71047 -3.05049 1.11756 1.28472 3.05946 3.40079 3.45077 3.47973 3.56478 3.82010 4.50973 4.58224 4.58884 4.83674 4.86787 4.98821 5.03530 5.12741 5.17842 5.28967 5.34053 5.36796 5.43168 5.48203 5.53396 5.55883 5.64258 5.70759 5.78962 5.85642 5.87897 6.14611 6.23464 6.30005 6.38259 6.46785 6.57361 6.60576 6.69398 6.71923 7.31471 7.55996 7.60660 7.62855 7.83233 8.25288 9.21287 9.81651 10.47906 11.40960 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.041481 B = 0.002415 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.840088 B =11591.630537 C =12042.803679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.049 4.049 3 C -0.165 4.165 4 C -0.077 4.077 5 C -0.218 4.218 6 C 0.140 3.860 7 O -0.303 6.303 8 C 0.063 3.937 9 C 0.063 3.937 10 O -0.373 6.373 11 C 0.072 3.928 12 H 0.067 0.933 13 C -0.136 4.136 14 C 0.178 3.822 15 N -0.604 5.604 16 C -0.227 4.227 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.117 3.883 25 C -0.155 4.155 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.252 0.748 41 H 0.027 0.973 42 H 0.036 0.964 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.442 20.324 9.940 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.049 4.049 3 C -0.184 4.184 4 C -0.095 4.095 5 C -0.237 4.237 6 C 0.094 3.906 7 O -0.216 6.216 8 C -0.012 4.012 9 C -0.014 4.014 10 O -0.291 6.291 11 C 0.013 3.987 12 H 0.085 0.915 13 C -0.175 4.175 14 C 0.053 3.947 15 N -0.332 5.332 16 C -0.356 4.356 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.010 4.010 25 C -0.174 4.174 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.054 0.946 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.547 19.995 9.707 25.047 hybrid contribution 1.277 -0.448 -0.056 1.354 sum -10.270 19.548 9.651 24.098 Atomic orbital electron populations 1.20810 0.90816 1.02901 1.02615 1.19704 0.96023 0.92294 0.96913 1.20903 0.94159 0.97451 1.05852 1.20909 0.94172 0.97333 0.97085 1.21270 1.00321 0.92308 1.09807 1.19063 0.91879 0.84915 0.94736 1.86180 1.19963 1.27561 1.87921 1.22919 0.78501 0.97862 1.01901 1.22478 0.98514 0.91536 0.88860 1.87945 1.76319 1.28030 1.36821 1.23441 0.95342 0.81234 0.98652 0.91525 1.22957 0.98496 0.97860 0.98136 1.21211 0.81391 0.92449 0.99608 1.44425 1.02638 1.12630 1.73532 1.19106 0.84129 0.97164 1.35158 0.90347 1.24826 0.97161 0.97248 1.01344 1.69967 1.22746 1.14857 1.49394 0.86021 0.82385 0.79498 0.77711 1.20511 1.21737 1.21716 1.21938 0.94060 0.89436 0.95518 1.20327 0.91017 0.98688 1.07333 0.90847 0.91287 0.91398 0.86141 0.85921 0.85519 0.90775 0.90994 0.92416 0.91071 0.91811 0.91482 0.93343 0.93541 0.93743 0.95535 0.94569 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.05 -0.47 5.88 -104.65 -0.62 -1.09 16 3 C -0.17 -1.49 9.70 -39.56 -0.38 -1.87 16 4 C -0.08 -0.71 10.04 -39.60 -0.40 -1.10 16 5 C -0.22 -2.30 9.04 -39.43 -0.36 -2.65 16 6 C 0.14 1.73 6.69 -39.21 -0.26 1.47 16 7 O -0.30 -4.16 10.10 -24.27 -0.25 -4.40 16 8 C 0.06 0.72 5.12 37.16 0.19 0.91 16 9 C 0.06 0.82 6.20 37.16 0.23 1.05 16 10 O -0.37 -6.45 10.12 -40.09 -0.41 -6.85 16 11 C 0.07 1.36 3.49 -24.58 -0.09 1.27 16 12 H 0.07 1.21 7.90 -51.92 -0.41 0.80 16 13 C -0.14 -2.76 6.69 -24.90 -0.17 -2.93 16 14 C 0.18 4.47 5.38 -2.92 -0.02 4.46 16 15 N -0.60 -15.97 3.40 -169.86 -0.58 -16.55 16 16 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 17 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -27.48 10.33 55.49 0.57 -26.91 16 20 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 C 0.12 2.55 6.96 -2.53 -0.02 2.53 16 25 C -0.16 -1.77 9.64 -39.43 -0.38 -2.15 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.43 8.09 -51.93 -0.42 0.02 16 28 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 29 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 30 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 31 H 0.13 1.12 6.30 -52.49 -0.33 0.79 16 32 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 33 H 0.07 0.80 7.66 -51.93 -0.40 0.40 16 34 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.05 1.32 7.39 -51.93 -0.38 0.93 16 39 H 0.05 1.28 7.51 -51.93 -0.39 0.89 16 40 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -32.50 353.31 -9.43 -41.93 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.92 Total: -2.30 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -2.15 Total: -7.52 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.00 Total: -43.46 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.65 Total: -11.25 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.50 -9.43 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224407188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.671 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds