Wall clock time and date at job start Tue Mar 31 2020 06:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38282 * 119.97546 * 2 1 4 4 C 1.38248 * 120.11486 * 180.02562 * 3 2 1 5 5 C 1.38171 * 120.05228 * 359.97438 * 4 3 2 6 6 C 1.38712 * 119.94497 * 0.02562 * 5 4 3 7 7 O 1.35896 * 120.05159 * 180.02562 * 6 5 4 8 8 C 1.42900 * 117.00558 * 0.02562 * 7 6 5 9 9 C 1.52996 * 109.47112 * 179.97438 * 8 7 6 10 10 O 1.42895 * 109.47194 * 64.99968 * 9 8 7 11 11 C 1.42900 * 114.00206 * 179.97438 * 10 9 8 12 12 H 1.09008 * 110.88137 * 32.42926 * 11 10 9 13 13 C 1.55154 * 111.03913 * 156.33029 * 11 10 9 14 14 C 1.54325 * 102.94303 * 153.59305 * 13 11 10 15 15 N 1.47290 * 107.30599 * 337.81911 * 14 13 11 16 16 C 1.36938 * 125.79079 * 178.92205 * 15 14 13 17 17 H 1.08005 * 119.99558 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00146 * 0.02562 * 16 15 14 19 19 N 1.31620 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47268 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47204 * 119.99715 * 20 18 16 23 23 H 1.48508 * 109.46889 * 239.99519 * 20 18 16 24 24 C 1.47425 * 108.55742 * 358.92448 * 15 14 13 25 25 C 1.38122 * 119.96873 * 180.25934 * 2 1 3 26 26 H 1.08992 * 109.47159 * 89.99791 * 1 2 3 27 27 H 1.09002 * 109.46891 * 209.99940 * 1 2 3 28 28 H 1.09000 * 109.46678 * 329.99543 * 1 2 3 29 29 H 1.08001 * 119.94558 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.97455 * 179.97438 * 4 3 2 31 31 H 1.07999 * 120.02155 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.46740 * 59.99740 * 8 7 6 33 33 H 1.09002 * 109.46698 * 300.00245 * 8 7 6 34 34 H 1.09001 * 109.47194 * 304.99516 * 9 8 7 35 35 H 1.09004 * 109.46825 * 184.99586 * 9 8 7 36 36 H 1.09002 * 110.72290 * 271.95991 * 13 11 10 37 37 H 1.08994 * 110.71922 * 35.05460 * 13 11 10 38 38 H 1.09004 * 109.88239 * 97.22707 * 14 13 11 39 39 H 1.08995 * 109.88239 * 218.23629 * 14 13 11 40 40 H 0.96999 * 120.00175 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.36696 * 265.26054 * 24 15 14 42 42 H 1.08995 * 110.36608 * 143.04891 * 24 15 14 43 43 H 1.07997 * 120.03282 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2012 -0.0005 5 6 4.2752 0.0069 -0.0005 6 6 3.5845 -1.1960 -0.0005 7 8 4.2658 -2.3719 0.0000 8 6 5.6927 -2.2951 0.0011 9 6 6.2794 -3.7081 0.0022 10 8 5.9372 -4.3669 -1.2188 11 6 6.4401 -5.7006 -1.3203 12 1 6.4796 -6.1766 -0.3405 13 6 5.5939 -6.5409 -2.3130 14 6 6.5963 -7.6054 -2.8065 15 7 7.9499 -7.0692 -2.5841 16 6 9.1237 -7.7147 -2.8684 17 1 10.0683 -7.2317 -2.6659 18 6 9.0996 -8.9897 -3.4167 19 7 7.9484 -9.5784 -3.6630 20 14 10.7008 -9.8703 -3.8038 21 1 11.8461 -8.9997 -3.4359 22 1 10.7704 -11.1347 -3.0281 23 1 10.7588 -10.1766 -5.2558 24 6 7.8303 -5.7195 -2.0033 25 6 2.1970 -1.1965 -0.0054 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6566 2.1324 0.0004 30 1 4.1177 2.1381 -0.0010 31 1 5.3552 0.0101 -0.0005 32 1 6.0271 -1.7624 0.8914 33 1 6.0285 -1.7624 -0.8886 34 1 5.8738 -4.2693 0.8440 35 1 7.3642 -3.6509 0.0925 36 1 4.7532 -7.0102 -1.8020 37 1 5.2444 -5.9234 -3.1404 38 1 6.4658 -8.5280 -2.2407 39 1 6.4409 -7.7969 -3.8683 40 1 7.9315 -10.4695 -4.0458 41 1 7.8782 -4.9636 -2.7872 42 1 8.6168 -5.5521 -1.2674 43 1 1.6570 -2.1318 -0.0101 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224407188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:03 Heat of formation + Delta-G solvation = -54.942701 kcal Electronic energy + Delta-G solvation = -22353.721670 eV Core-core repulsion = 18978.183215 eV Total energy + Delta-G solvation = -3375.538455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.11173 -39.90359 -38.66399 -37.42081 -34.26980 -33.38657 -32.13919 -31.08004 -30.08770 -28.73055 -27.81731 -26.35434 -24.21325 -23.44629 -22.10080 -21.89546 -21.69251 -19.02379 -18.82628 -18.09994 -17.21591 -16.87990 -16.83403 -16.55835 -16.10302 -15.70139 -15.33977 -15.10016 -14.88157 -14.47900 -14.29051 -14.11798 -13.93599 -13.84447 -13.27643 -13.09355 -12.97971 -12.89389 -12.76115 -12.62011 -12.37610 -12.27076 -12.01507 -11.99037 -11.81368 -11.76407 -11.62375 -11.44455 -10.75265 -10.50357 -9.71921 -9.11275 -8.95018 -7.87492 -5.24668 0.38482 0.51990 1.45788 1.47411 1.57844 2.23012 2.43303 2.61467 2.82499 3.31638 3.69290 3.76899 3.85925 3.92973 4.01243 4.07523 4.13093 4.16388 4.19200 4.33704 4.37232 4.44161 4.51964 4.56830 4.60970 4.70281 4.75481 4.84477 4.89625 4.93794 5.01492 5.04622 5.06145 5.25896 5.39893 5.41919 5.51694 5.59241 5.67683 5.69797 5.90531 6.12824 6.29306 6.50505 7.05769 7.71948 8.37385 9.23678 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.041481 B = 0.002415 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.840088 B =11591.630537 C =12042.803679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.055 4.055 3 C -0.168 4.168 4 C -0.080 4.080 5 C -0.227 4.227 6 C 0.114 3.886 7 O -0.330 6.330 8 C 0.064 3.936 9 C 0.054 3.946 10 O -0.385 6.385 11 C 0.091 3.909 12 H 0.079 0.921 13 C -0.126 4.126 14 C 0.187 3.813 15 N -0.627 5.627 16 C -0.243 4.243 17 H 0.086 0.914 18 C -0.069 4.069 19 N -0.953 5.953 20 Si 0.984 3.016 21 H -0.264 1.264 22 H -0.290 1.290 23 H -0.292 1.292 24 C 0.114 3.886 25 C -0.178 4.178 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.020 0.980 39 H 0.010 0.990 40 H 0.248 0.752 41 H 0.023 0.977 42 H 0.051 0.949 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.169 22.588 11.096 27.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.186 4.186 4 C -0.098 4.098 5 C -0.245 4.245 6 C 0.069 3.931 7 O -0.244 6.244 8 C -0.011 4.011 9 C -0.022 4.022 10 O -0.304 6.304 11 C 0.032 3.968 12 H 0.097 0.903 13 C -0.164 4.164 14 C 0.062 3.938 15 N -0.354 5.354 16 C -0.372 4.372 17 H 0.104 0.896 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.812 3.188 21 H -0.188 1.188 22 H -0.217 1.217 23 H -0.220 1.220 24 C -0.011 4.011 25 C -0.197 4.197 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.038 0.962 39 H 0.028 0.972 40 H 0.057 0.943 41 H 0.040 0.960 42 H 0.069 0.931 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.274 22.306 10.883 27.260 hybrid contribution 1.148 -1.030 -0.394 1.592 sum -10.126 21.277 10.490 25.793 Atomic orbital electron populations 1.20866 0.89020 1.03875 1.03281 1.20056 0.97470 0.91947 0.96057 1.21286 0.94446 0.98193 1.04687 1.21294 0.94561 0.97945 0.95981 1.21499 1.01167 0.92136 1.09744 1.19332 0.92312 0.85194 0.96311 1.86123 1.20998 1.28752 1.88528 1.23012 0.77763 0.96923 1.03377 1.22806 0.99968 0.92159 0.87256 1.87928 1.76260 1.26961 1.39245 1.23082 0.92995 0.82346 0.98329 0.90341 1.22789 0.97946 0.96854 0.98837 1.20938 0.82609 0.93147 0.97098 1.44738 1.02489 1.14357 1.73860 1.19525 0.85264 0.97604 1.34822 0.89649 1.25740 1.00583 0.98190 1.01642 1.70187 1.24883 1.14878 1.50255 0.84934 0.78823 0.78131 0.76957 1.18778 1.21688 1.21952 1.22086 0.96405 0.86982 0.95662 1.20522 0.91182 0.99382 1.08622 0.90223 0.91142 0.89641 0.83636 0.83299 0.84163 0.87716 0.90988 0.91702 0.89179 0.89655 0.91333 0.96198 0.97178 0.94250 0.95962 0.93116 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.24 0.71 -0.66 16 2 C -0.06 -0.99 5.88 -19.88 -0.12 -1.11 16 3 C -0.17 -2.63 9.70 22.28 0.22 -2.42 16 4 C -0.08 -1.28 10.04 22.26 0.22 -1.06 16 5 C -0.23 -4.42 9.04 22.37 0.20 -4.21 16 6 C 0.11 2.76 6.69 22.51 0.15 2.91 16 7 O -0.33 -8.87 10.10 -87.73 -0.89 -9.75 16 8 C 0.06 1.34 5.12 71.98 0.37 1.71 16 9 C 0.05 1.30 6.20 71.98 0.45 1.75 16 10 O -0.39 -12.75 10.12 -144.34 -1.46 -14.21 16 11 C 0.09 3.35 3.49 31.98 0.11 3.46 16 12 H 0.08 2.72 7.90 -2.38 -0.02 2.70 16 13 C -0.13 -5.09 6.69 31.78 0.21 -4.87 16 14 C 0.19 9.68 5.38 86.68 0.47 10.15 16 15 N -0.63 -33.50 3.40 -691.30 -2.35 -35.85 16 16 C -0.24 -13.94 10.28 84.03 0.86 -13.07 16 17 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 18 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 19 N -0.95 -58.48 10.33 21.65 0.22 -58.25 16 20 Si 0.98 46.21 29.55 68.60 2.03 48.24 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 24 C 0.11 4.88 6.96 86.85 0.60 5.49 16 25 C -0.18 -4.07 9.64 22.37 0.22 -3.85 16 26 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 28 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 29 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 30 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 31 H 0.14 2.19 6.30 -2.91 -0.02 2.17 16 32 H 0.11 1.52 7.66 -2.39 -0.02 1.50 16 33 H 0.07 1.48 7.66 -2.39 -0.02 1.46 16 34 H 0.06 1.48 8.11 -2.39 -0.02 1.46 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 36 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.02 1.12 7.39 -2.38 -0.02 1.11 16 39 H 0.01 0.58 7.51 -2.39 -0.02 0.56 16 40 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 41 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -71.41 353.31 3.67 -67.74 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.97 Total: 11.39 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 5.14 Total: -9.30 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -2.13 Total: -94.10 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -2.35 Total: -23.97 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -71.41 3.67 -67.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224407188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.802 kcal (2) G-P(sol) polarization free energy of solvation -71.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds