Wall clock time and date at job start Tue Mar 31 2020 06:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38282 * 119.97109 * 2 1 4 4 C 1.38252 * 120.11213 * 179.97438 * 3 2 1 5 5 C 1.38163 * 120.05355 * 359.77110 * 4 3 2 6 6 C 1.38706 * 119.94318 * 0.48602 * 5 4 3 7 7 O 1.35907 * 120.05498 * 179.76845 * 6 5 4 8 8 C 1.42895 * 116.99944 * 359.71904 * 7 6 5 9 9 C 1.53000 * 109.47297 * 180.02562 * 8 7 6 10 10 O 1.42898 * 109.46861 * 65.00248 * 9 8 7 11 11 C 1.42908 * 113.99771 * 179.97438 * 10 9 8 12 12 H 1.08999 * 110.64058 * 328.31440 * 11 10 9 13 13 C 1.55152 * 110.71774 * 204.97677 * 11 10 9 14 14 C 1.55135 * 101.48415 * 205.97117 * 13 11 10 15 15 N 1.47422 * 104.72256 * 37.29963 * 14 13 11 16 16 C 1.36933 * 125.65011 * 155.82266 * 15 14 13 17 17 H 1.08004 * 120.00043 * 190.43950 * 16 15 14 18 18 C 1.38811 * 120.00083 * 10.43368 * 16 15 14 19 19 N 1.31622 * 119.99907 * 9.07202 * 18 16 15 20 20 Si 1.86799 * 119.99989 * 189.07343 * 18 16 15 21 21 H 1.48497 * 109.47302 * 265.01396 * 20 18 16 22 22 H 1.48500 * 109.47226 * 25.01711 * 20 18 16 23 23 H 1.48507 * 109.46840 * 145.01231 * 20 18 16 24 24 C 1.47026 * 108.70003 * 335.54793 * 15 14 13 25 25 C 1.38121 * 119.97585 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47048 * 270.01345 * 1 2 3 27 27 H 1.08999 * 109.47456 * 30.01846 * 1 2 3 28 28 H 1.09005 * 109.47101 * 150.01966 * 1 2 3 29 29 H 1.07998 * 119.94917 * 0.02562 * 3 2 1 30 30 H 1.07995 * 119.96963 * 180.02562 * 4 3 2 31 31 H 1.08004 * 120.02711 * 180.24860 * 5 4 3 32 32 H 1.09007 * 109.47023 * 60.00797 * 8 7 6 33 33 H 1.08997 * 109.47914 * 300.00895 * 8 7 6 34 34 H 1.09005 * 109.46954 * 305.00279 * 9 8 7 35 35 H 1.08996 * 109.47509 * 185.00428 * 9 8 7 36 36 H 1.08996 * 111.00666 * 324.20745 * 13 11 10 37 37 H 1.08998 * 111.00510 * 88.02688 * 13 11 10 38 38 H 1.09002 * 110.49574 * 278.45362 * 14 13 11 39 39 H 1.09000 * 110.34396 * 156.06498 * 14 13 11 40 40 H 0.96996 * 119.99869 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.87591 * 120.70508 * 24 15 14 42 42 H 1.08999 * 109.88604 * 241.71286 * 24 15 14 43 43 H 1.08001 * 120.02782 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2751 0.0072 0.0058 6 6 3.5845 -1.1957 0.0005 7 8 4.2658 -2.3717 0.0009 8 6 5.6927 -2.2948 0.0009 9 6 6.2796 -3.7078 0.0008 10 8 5.9365 -4.3660 -1.2203 11 6 6.4394 -5.6997 -1.3229 12 1 7.3871 -5.7948 -0.7929 13 6 6.5935 -6.1153 -2.8098 14 6 6.4642 -7.6583 -2.7142 15 7 5.4439 -7.8851 -1.6745 16 6 4.6626 -9.0031 -1.5533 17 1 3.8303 -9.0083 -0.8651 18 6 4.9404 -10.1298 -2.3151 19 7 6.0516 -10.1915 -3.0179 20 14 3.7371 -11.5583 -2.3429 21 1 4.1481 -12.5713 -1.3378 22 1 2.3746 -11.0643 -2.0192 23 1 3.7320 -12.1750 -3.6938 24 6 5.4088 -6.7147 -0.7853 25 6 2.1970 -1.1965 0.0005 26 1 -0.3633 0.0002 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6565 2.1324 0.0004 30 1 4.1175 2.1382 0.0010 31 1 5.3552 0.0103 0.0103 32 1 6.0279 -1.7619 0.8907 33 1 6.0280 -1.7625 -0.8892 34 1 5.8746 -4.2695 0.8426 35 1 7.3644 -3.6507 0.0904 36 1 5.7959 -5.6901 -3.4190 37 1 7.5719 -5.8296 -3.1960 38 1 7.4139 -8.1032 -2.4172 39 1 6.1328 -8.0706 -3.6672 40 1 6.2454 -10.9786 -3.5505 41 1 4.4128 -6.2719 -0.7946 42 1 5.6726 -7.0121 0.2296 43 1 1.6571 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224407189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:07 Heat of formation + Delta-G solvation = -36.746919 kcal Electronic energy + Delta-G solvation = -22518.533142 eV Core-core repulsion = 19143.783716 eV Total energy + Delta-G solvation = -3374.749427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.26536 -38.50332 -37.66302 -35.81299 -32.69161 -32.29829 -31.06569 -29.47429 -28.84134 -27.18547 -26.93418 -24.34751 -23.24641 -22.65629 -20.96350 -20.23143 -20.10014 -17.99938 -17.02559 -16.79621 -16.29644 -16.04359 -15.50352 -14.90966 -14.67705 -14.41443 -14.21205 -13.96791 -13.66400 -13.42474 -13.37047 -12.77684 -12.39842 -12.29219 -12.27116 -11.88946 -11.71417 -11.62883 -11.38482 -11.12616 -11.00999 -10.83988 -10.78056 -10.73898 -10.28661 -10.06424 -9.76344 -9.64691 -9.11483 -8.95112 -8.56499 -8.28902 -6.76854 -5.72102 -3.04713 1.15245 1.32068 3.08994 3.42041 3.47594 3.50355 3.59972 3.83156 4.53320 4.60953 4.62089 4.85217 4.89521 4.99881 5.06704 5.15550 5.19040 5.31953 5.34679 5.38824 5.41440 5.44792 5.52828 5.55053 5.66910 5.75884 5.77110 5.88586 5.91414 6.18289 6.26195 6.34281 6.42364 6.53998 6.58537 6.63681 6.67035 6.78623 7.35561 7.50912 7.57506 7.63984 7.81097 8.28797 9.22144 9.83826 10.51397 11.41304 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020941 B = 0.002891 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.744544 B = 9683.045268 C =10699.585427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.048 4.048 3 C -0.166 4.166 4 C -0.078 4.078 5 C -0.219 4.219 6 C 0.140 3.860 7 O -0.301 6.301 8 C 0.064 3.936 9 C 0.061 3.939 10 O -0.372 6.372 11 C 0.076 3.924 12 H 0.064 0.936 13 C -0.139 4.139 14 C 0.174 3.826 15 N -0.601 5.601 16 C -0.227 4.227 17 H 0.076 0.924 18 C -0.009 4.009 19 N -0.920 5.920 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.280 1.280 23 H -0.290 1.290 24 C 0.116 3.884 25 C -0.154 4.154 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.073 0.927 40 H 0.253 0.747 41 H 0.035 0.965 42 H 0.020 0.980 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 23.096 6.705 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.184 4.184 4 C -0.096 4.096 5 C -0.238 4.238 6 C 0.095 3.905 7 O -0.214 6.214 8 C -0.011 4.011 9 C -0.016 4.016 10 O -0.290 6.290 11 C 0.018 3.982 12 H 0.082 0.918 13 C -0.177 4.177 14 C 0.049 3.951 15 N -0.328 5.328 16 C -0.355 4.355 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.205 1.205 23 H -0.216 1.216 24 C -0.010 4.010 25 C -0.173 4.173 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.038 0.962 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.743 22.768 6.471 23.828 hybrid contribution -0.080 -0.745 0.260 0.793 sum -2.823 22.023 6.731 23.201 Atomic orbital electron populations 1.20816 0.90799 1.03057 1.02526 1.19709 0.96051 0.92269 0.96825 1.20899 0.94151 0.97437 1.05900 1.20891 0.94173 0.97280 0.97239 1.21244 1.00217 0.92307 1.10030 1.19064 0.91899 0.84886 0.94695 1.86217 1.19793 1.27493 1.87880 1.22890 0.78758 0.97736 1.01732 1.22493 0.98048 0.91615 0.89404 1.87991 1.77151 1.27549 1.36336 1.23230 0.95646 0.80852 0.98424 0.91849 1.23167 1.00853 0.99990 0.93718 1.21459 0.92116 0.87141 0.94377 1.44375 1.43720 1.15739 1.29005 1.19044 1.06106 0.89292 1.21063 0.90626 1.24833 0.97384 0.97637 1.00639 1.69946 1.23620 1.29197 1.34021 0.86102 0.80467 0.82209 0.77011 1.21642 1.20541 1.21589 1.21729 0.97012 0.88780 0.93471 1.20366 0.91079 0.98788 1.07056 0.90923 0.91374 0.91154 0.86155 0.85972 0.85601 0.90826 0.91162 0.92156 0.91355 0.91109 0.91888 0.95361 0.90899 0.93704 0.94692 0.96247 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.01 36.00 0.36 -0.52 16 2 C -0.05 -0.50 5.88 -104.65 -0.62 -1.11 16 3 C -0.17 -1.56 9.70 -39.56 -0.38 -1.95 16 4 C -0.08 -0.73 10.04 -39.60 -0.40 -1.13 16 5 C -0.22 -2.36 9.04 -39.44 -0.36 -2.72 16 6 C 0.14 1.83 6.69 -39.22 -0.26 1.56 16 7 O -0.30 -4.36 10.10 -24.30 -0.25 -4.60 16 8 C 0.06 0.73 5.12 37.16 0.19 0.92 16 9 C 0.06 0.80 6.19 37.16 0.23 1.03 16 10 O -0.37 -6.48 10.04 -40.09 -0.40 -6.88 16 11 C 0.08 1.44 3.40 -24.90 -0.08 1.36 16 12 H 0.06 1.08 7.88 -51.93 -0.41 0.68 16 13 C -0.14 -2.78 6.82 -24.46 -0.17 -2.94 16 14 C 0.17 4.34 5.43 -2.41 -0.01 4.33 16 15 N -0.60 -16.15 3.39 -169.93 -0.58 -16.73 16 16 C -0.23 -6.57 10.24 -15.06 -0.15 -6.72 16 17 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 18 C -0.01 -0.25 5.40 -17.43 -0.09 -0.34 16 19 N -0.92 -27.49 10.68 55.49 0.59 -26.90 16 20 Si 0.91 22.50 29.56 -169.99 -5.03 17.48 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 C 0.12 2.63 7.02 -3.06 -0.02 2.61 16 25 C -0.15 -1.90 9.64 -39.44 -0.38 -2.28 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.13 1.11 6.30 -52.48 -0.33 0.78 16 32 H 0.07 0.63 7.65 -51.93 -0.40 0.23 16 33 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 36 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 39 H 0.07 2.00 6.95 -51.93 -0.36 1.64 16 40 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 353.59 15.07 5.33 5.33 Total: -1.00 -32.98 353.59 -9.40 -42.38 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.92 Total: -2.15 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -2.15 Total: -7.91 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.02 Total: -43.63 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.65 Total: -11.49 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.98 -9.40 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224407189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.629 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds