Wall clock time and date at job start Tue Mar 31 2020 06:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38282 * 119.97109 * 2 1 4 4 C 1.38252 * 120.11213 * 179.97438 * 3 2 1 5 5 C 1.38163 * 120.05355 * 359.77110 * 4 3 2 6 6 C 1.38706 * 119.94318 * 0.48602 * 5 4 3 7 7 O 1.35907 * 120.05498 * 179.76845 * 6 5 4 8 8 C 1.42895 * 116.99944 * 359.71904 * 7 6 5 9 9 C 1.53000 * 109.47297 * 180.02562 * 8 7 6 10 10 O 1.42898 * 109.46861 * 65.00248 * 9 8 7 11 11 C 1.42908 * 113.99771 * 179.97438 * 10 9 8 12 12 H 1.08999 * 110.64058 * 328.31440 * 11 10 9 13 13 C 1.55152 * 110.71774 * 204.97677 * 11 10 9 14 14 C 1.55135 * 101.48415 * 205.97117 * 13 11 10 15 15 N 1.47422 * 104.72256 * 37.29963 * 14 13 11 16 16 C 1.36933 * 125.65011 * 155.82266 * 15 14 13 17 17 H 1.08004 * 120.00043 * 190.43950 * 16 15 14 18 18 C 1.38811 * 120.00083 * 10.43368 * 16 15 14 19 19 N 1.31622 * 119.99907 * 9.07202 * 18 16 15 20 20 Si 1.86799 * 119.99989 * 189.07343 * 18 16 15 21 21 H 1.48497 * 109.47302 * 265.01396 * 20 18 16 22 22 H 1.48500 * 109.47226 * 25.01711 * 20 18 16 23 23 H 1.48507 * 109.46840 * 145.01231 * 20 18 16 24 24 C 1.47026 * 108.70003 * 335.54793 * 15 14 13 25 25 C 1.38121 * 119.97585 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47048 * 270.01345 * 1 2 3 27 27 H 1.08999 * 109.47456 * 30.01846 * 1 2 3 28 28 H 1.09005 * 109.47101 * 150.01966 * 1 2 3 29 29 H 1.07998 * 119.94917 * 0.02562 * 3 2 1 30 30 H 1.07995 * 119.96963 * 180.02562 * 4 3 2 31 31 H 1.08004 * 120.02711 * 180.24860 * 5 4 3 32 32 H 1.09007 * 109.47023 * 60.00797 * 8 7 6 33 33 H 1.08997 * 109.47914 * 300.00895 * 8 7 6 34 34 H 1.09005 * 109.46954 * 305.00279 * 9 8 7 35 35 H 1.08996 * 109.47509 * 185.00428 * 9 8 7 36 36 H 1.08996 * 111.00666 * 324.20745 * 13 11 10 37 37 H 1.08998 * 111.00510 * 88.02688 * 13 11 10 38 38 H 1.09002 * 110.49574 * 278.45362 * 14 13 11 39 39 H 1.09000 * 110.34396 * 156.06498 * 14 13 11 40 40 H 0.96996 * 119.99869 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.87591 * 120.70508 * 24 15 14 42 42 H 1.08999 * 109.88604 * 241.71286 * 24 15 14 43 43 H 1.08001 * 120.02782 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2751 0.0072 0.0058 6 6 3.5845 -1.1957 0.0005 7 8 4.2658 -2.3717 0.0009 8 6 5.6927 -2.2948 0.0009 9 6 6.2796 -3.7078 0.0008 10 8 5.9365 -4.3660 -1.2203 11 6 6.4394 -5.6997 -1.3229 12 1 7.3871 -5.7948 -0.7929 13 6 6.5935 -6.1153 -2.8098 14 6 6.4642 -7.6583 -2.7142 15 7 5.4439 -7.8851 -1.6745 16 6 4.6626 -9.0031 -1.5533 17 1 3.8303 -9.0083 -0.8651 18 6 4.9404 -10.1298 -2.3151 19 7 6.0516 -10.1915 -3.0179 20 14 3.7371 -11.5583 -2.3429 21 1 4.1481 -12.5713 -1.3378 22 1 2.3746 -11.0643 -2.0192 23 1 3.7320 -12.1750 -3.6938 24 6 5.4088 -6.7147 -0.7853 25 6 2.1970 -1.1965 0.0005 26 1 -0.3633 0.0002 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6565 2.1324 0.0004 30 1 4.1175 2.1382 0.0010 31 1 5.3552 0.0103 0.0103 32 1 6.0279 -1.7619 0.8907 33 1 6.0280 -1.7625 -0.8892 34 1 5.8746 -4.2695 0.8426 35 1 7.3644 -3.6507 0.0904 36 1 5.7959 -5.6901 -3.4190 37 1 7.5719 -5.8296 -3.1960 38 1 7.4139 -8.1032 -2.4172 39 1 6.1328 -8.0706 -3.6672 40 1 6.2454 -10.9786 -3.5505 41 1 4.4128 -6.2719 -0.7946 42 1 5.6726 -7.0121 0.2296 43 1 1.6571 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224407189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:07 Heat of formation + Delta-G solvation = -56.138778 kcal Electronic energy + Delta-G solvation = -22519.374036 eV Core-core repulsion = 19143.783716 eV Total energy + Delta-G solvation = -3375.590321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12048 -39.92525 -38.66930 -37.41863 -34.28265 -33.39770 -32.13977 -31.05762 -30.09695 -28.76712 -27.83531 -26.34795 -24.22122 -23.45675 -22.20856 -21.81509 -21.67632 -18.97022 -18.84695 -18.18388 -17.16967 -16.88180 -16.81924 -16.56497 -16.27615 -15.66947 -15.33994 -15.08533 -14.94974 -14.46813 -14.30145 -14.17464 -13.90105 -13.61208 -13.47366 -13.07733 -12.93544 -12.86476 -12.77330 -12.55551 -12.43023 -12.32613 -12.05944 -12.00684 -11.81955 -11.80460 -11.65989 -11.41596 -10.73472 -10.51711 -9.73212 -9.11923 -8.91022 -7.92059 -5.27847 0.37529 0.51234 1.44198 1.46325 1.56407 2.24430 2.44436 2.61981 2.81683 3.27794 3.67706 3.77592 3.84643 3.92385 3.99420 4.07644 4.13326 4.16549 4.18559 4.33837 4.36343 4.42862 4.50969 4.55518 4.63131 4.70838 4.77550 4.82105 4.88729 4.97502 5.00095 5.01645 5.04263 5.24446 5.39093 5.39942 5.50516 5.54937 5.66144 5.66694 5.90558 6.15795 6.29254 6.51720 7.04249 7.70567 8.37173 9.20082 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020941 B = 0.002891 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.744544 B = 9683.045268 C =10699.585427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.055 4.055 3 C -0.168 4.168 4 C -0.078 4.078 5 C -0.224 4.224 6 C 0.114 3.886 7 O -0.335 6.335 8 C 0.062 3.938 9 C 0.052 3.948 10 O -0.387 6.387 11 C 0.094 3.906 12 H 0.090 0.910 13 C -0.125 4.125 14 C 0.179 3.821 15 N -0.625 5.625 16 C -0.251 4.251 17 H 0.074 0.926 18 C -0.061 4.061 19 N -0.947 5.947 20 Si 0.981 3.019 21 H -0.283 1.283 22 H -0.272 1.272 23 H -0.289 1.289 24 C 0.113 3.887 25 C -0.184 4.184 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.145 0.855 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.010 0.990 39 H 0.038 0.962 40 H 0.251 0.749 41 H 0.020 0.980 42 H 0.023 0.977 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.242 25.473 7.387 26.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.055 4.055 3 C -0.185 4.185 4 C -0.096 4.096 5 C -0.243 4.243 6 C 0.069 3.931 7 O -0.249 6.249 8 C -0.012 4.012 9 C -0.024 4.024 10 O -0.306 6.306 11 C 0.036 3.964 12 H 0.108 0.892 13 C -0.163 4.163 14 C 0.054 3.946 15 N -0.352 5.352 16 C -0.380 4.380 17 H 0.092 0.908 18 C -0.255 4.255 19 N -0.595 5.595 20 Si 0.808 3.192 21 H -0.209 1.209 22 H -0.196 1.196 23 H -0.215 1.215 24 C -0.013 4.013 25 C -0.203 4.203 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.162 0.838 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.028 0.972 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.038 0.962 42 H 0.041 0.959 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.436 25.179 7.173 26.294 hybrid contribution -0.209 -1.392 0.099 1.411 sum -2.645 23.787 7.272 25.014 Atomic orbital electron populations 1.20869 0.89180 1.03704 1.03360 1.20041 0.97403 0.91968 0.96112 1.21290 0.94567 0.98025 1.04667 1.21315 0.94448 0.98021 0.95793 1.21499 1.01261 0.91872 1.09635 1.19330 0.92197 0.85321 0.96258 1.86160 1.21343 1.28889 1.88511 1.23061 0.77594 0.96981 1.03566 1.22859 1.00319 0.91944 0.87275 1.87970 1.77580 1.26383 1.38654 1.22952 0.95315 0.80896 0.97224 0.89181 1.22989 1.02521 0.95900 0.94900 1.21270 0.90572 0.90544 0.92237 1.44689 1.43773 1.16245 1.30488 1.19386 1.06729 0.90506 1.21339 0.90799 1.25698 0.99155 1.00275 1.00342 1.70131 1.25098 1.29748 1.34505 0.85041 0.78493 0.78749 0.76886 1.20926 1.19638 1.21487 1.21873 0.97667 0.88521 0.93254 1.20529 0.91498 0.99271 1.08963 0.89914 0.89576 0.91657 0.83491 0.82948 0.83752 0.87631 0.90480 0.92827 0.87867 0.91900 0.88389 0.97180 0.94353 0.93984 0.96244 0.95884 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 10.01 71.23 0.71 -0.91 16 2 C -0.06 -1.09 5.88 -19.88 -0.12 -1.21 16 3 C -0.17 -2.77 9.70 22.28 0.22 -2.55 16 4 C -0.08 -1.26 10.04 22.26 0.22 -1.04 16 5 C -0.22 -4.43 9.04 22.36 0.20 -4.23 16 6 C 0.11 2.96 6.69 22.50 0.15 3.11 16 7 O -0.33 -9.74 10.10 -87.86 -0.89 -10.63 16 8 C 0.06 1.32 5.12 71.98 0.37 1.68 16 9 C 0.05 1.25 6.19 71.98 0.45 1.70 16 10 O -0.39 -12.97 10.04 -144.34 -1.45 -14.42 16 11 C 0.09 3.44 3.40 31.78 0.11 3.55 16 12 H 0.09 2.83 7.88 -2.39 -0.02 2.81 16 13 C -0.12 -4.89 6.82 32.06 0.22 -4.68 16 14 C 0.18 9.12 5.43 86.93 0.47 9.59 16 15 N -0.62 -34.40 3.39 -691.53 -2.35 -36.75 16 16 C -0.25 -14.89 10.24 84.03 0.86 -14.03 16 17 H 0.07 4.27 7.85 -2.91 -0.02 4.25 16 18 C -0.06 -3.59 5.40 84.86 0.46 -3.13 16 19 N -0.95 -57.94 10.68 21.65 0.23 -57.71 16 20 Si 0.98 46.95 29.56 68.60 2.03 48.98 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 C 0.11 5.14 7.02 86.73 0.61 5.75 16 25 C -0.18 -4.69 9.64 22.36 0.22 -4.47 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 0.90 8.09 -2.39 -0.02 0.88 16 28 H 0.06 0.98 8.08 -2.38 -0.02 0.96 16 29 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 30 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 31 H 0.14 2.17 6.30 -2.91 -0.02 2.15 16 32 H 0.11 1.51 7.65 -2.38 -0.02 1.49 16 33 H 0.08 1.50 7.67 -2.39 -0.02 1.48 16 34 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.10 1.77 8.11 -2.39 -0.02 1.75 16 36 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.01 0.55 8.07 -2.39 -0.02 0.53 16 39 H 0.04 2.18 6.95 -2.39 -0.02 2.17 16 40 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 41 H 0.02 0.94 8.06 -2.38 -0.02 0.92 16 42 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -73.78 353.59 3.69 -70.09 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.97 Total: 11.29 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 5.14 Total: -10.86 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -2.12 Total: -94.46 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -2.34 Total: -25.05 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -73.78 3.69 -70.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224407189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.951 kcal (2) G-P(sol) polarization free energy of solvation -73.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds