Wall clock time and date at job start Tue Mar 31 2020 06:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38281 * 119.97457 * 2 1 4 4 C 1.38244 * 120.11478 * 180.02562 * 3 2 1 5 5 C 1.38170 * 120.05335 * 359.67740 * 4 3 2 6 6 C 1.38715 * 119.94364 * 0.57995 * 5 4 3 7 7 O 1.35892 * 120.05917 * 179.72155 * 6 5 4 8 8 C 1.42899 * 117.00033 * 359.72248 * 7 6 5 9 9 C 1.52997 * 109.47457 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.47264 * 64.99865 * 9 8 7 11 11 C 1.42901 * 114.00134 * 179.97438 * 10 9 8 12 12 C 1.53932 * 113.73261 * 248.76575 * 11 10 9 13 13 N 1.48192 * 86.09968 * 221.95637 * 12 11 10 14 14 C 1.46899 * 111.06569 * 137.52066 * 13 12 11 15 15 C 1.50695 * 109.47108 * 70.57161 * 14 13 12 16 16 H 1.07993 * 120.00262 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00281 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99693 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00263 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46894 * 60.00390 * 19 17 15 21 21 H 1.48498 * 109.47198 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47260 * 300.00122 * 19 17 15 23 23 C 1.47957 * 90.79732 * 24.60361 * 13 12 11 24 24 C 1.38127 * 119.97147 * 179.97438 * 2 1 3 25 25 H 1.09006 * 109.46598 * 270.01974 * 1 2 3 26 26 H 1.08997 * 109.46955 * 30.01840 * 1 2 3 27 27 H 1.08996 * 109.47328 * 150.02234 * 1 2 3 28 28 H 1.08000 * 119.94471 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.97717 * 179.97438 * 4 3 2 30 30 H 1.07997 * 120.03054 * 180.29671 * 5 4 3 31 31 H 1.09004 * 109.47487 * 60.00041 * 8 7 6 32 32 H 1.09002 * 109.46902 * 300.00335 * 8 7 6 33 33 H 1.09001 * 109.47289 * 304.99698 * 9 8 7 34 34 H 1.09004 * 109.47261 * 184.99954 * 9 8 7 35 35 H 1.09001 * 112.93357 * 20.33418 * 11 10 9 36 36 H 1.09001 * 113.76149 * 336.24171 * 12 11 10 37 37 H 1.09006 * 113.75754 * 107.60738 * 12 11 10 38 38 H 1.09007 * 109.46682 * 190.56863 * 14 13 12 39 39 H 1.09000 * 109.47934 * 310.56740 * 14 13 12 40 40 H 0.97000 * 120.00246 * 179.97438 * 18 17 15 41 41 H 1.09007 * 113.76128 * 221.08459 * 23 13 12 42 42 H 1.08997 * 113.76440 * 89.71992 * 23 13 12 43 43 H 1.08006 * 120.02745 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 -0.0005 5 6 4.2752 0.0070 0.0057 6 6 3.5846 -1.1960 0.0003 7 8 4.2657 -2.3719 0.0006 8 6 5.6926 -2.2951 0.0006 9 6 6.2794 -3.7081 0.0003 10 8 5.9362 -4.3663 -1.2208 11 6 6.4390 -5.7000 -1.3235 12 6 7.5419 -5.8663 -2.3844 13 7 6.8599 -7.1303 -2.7490 14 6 6.7903 -7.2910 -4.2076 15 6 8.1684 -7.5734 -4.7481 16 1 9.0116 -7.6275 -4.0755 17 6 8.3528 -7.7625 -6.1013 18 7 7.3261 -7.6961 -6.9205 19 14 10.0611 -8.1118 -6.7714 20 1 10.5873 -9.3586 -6.1599 21 1 9.9907 -8.2756 -8.2456 22 1 10.9634 -6.9795 -6.4412 23 6 5.5801 -6.6193 -2.2104 24 6 2.1970 -1.1966 0.0005 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6566 2.1324 0.0004 29 1 4.1177 2.1381 -0.0010 30 1 5.3552 0.0101 0.0101 31 1 6.0279 -1.7622 0.8904 32 1 6.0277 -1.7627 -0.8896 33 1 5.8745 -4.2698 0.8421 34 1 7.3643 -3.6510 0.0899 35 1 6.6916 -6.1343 -0.3562 36 1 7.5143 -5.1101 -3.1689 37 1 8.5376 -6.0086 -1.9641 38 1 6.1276 -8.1218 -4.4503 39 1 6.4046 -6.3756 -4.6561 40 1 7.4558 -7.8288 -7.8726 41 1 5.0110 -7.3622 -1.6513 42 1 4.9773 -6.0839 -2.9439 43 1 1.6570 -2.1319 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224410012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:30 Heat of formation + Delta-G solvation = -27.112341 kcal Electronic energy + Delta-G solvation = -22089.055349 eV Core-core repulsion = 18714.723709 eV Total energy + Delta-G solvation = -3374.331640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33200 -39.32873 -37.95883 -36.37463 -32.84219 -32.72762 -31.25945 -29.55728 -28.64741 -27.19590 -25.58631 -24.84650 -23.37217 -22.71143 -21.52288 -21.00929 -19.28444 -18.08724 -17.10794 -16.41377 -16.36185 -16.12721 -15.64292 -15.25389 -14.97641 -14.43552 -14.36649 -14.05630 -13.90123 -13.45576 -13.37339 -13.13249 -12.57913 -12.33934 -12.27752 -12.03530 -11.99836 -11.75795 -11.54084 -11.28650 -11.14766 -11.05382 -10.89786 -10.76771 -10.61592 -10.23837 -9.63447 -9.19134 -9.14280 -9.00215 -8.47593 -8.34680 -7.79317 -6.03321 -4.05428 1.10329 1.26858 3.01244 3.33205 3.37001 3.39947 3.54822 3.70176 4.42755 4.55245 4.57360 4.77413 4.83696 4.88062 4.90348 4.99810 5.01652 5.10512 5.13327 5.27112 5.30344 5.32270 5.33137 5.37992 5.48014 5.54589 5.69085 5.86080 5.92867 6.12534 6.16647 6.21854 6.22506 6.37158 6.41532 6.50667 6.58456 6.70115 7.25480 7.27841 7.45620 7.64678 7.89251 8.12887 8.43143 9.01322 9.58639 11.07969 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023826 B = 0.002435 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.910763 B =11496.615986 C =11680.078620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.049 4.049 3 C -0.165 4.165 4 C -0.077 4.077 5 C -0.218 4.218 6 C 0.139 3.861 7 O -0.304 6.304 8 C 0.062 3.938 9 C 0.063 3.937 10 O -0.370 6.370 11 C 0.051 3.949 12 C 0.005 3.995 13 N -0.477 5.477 14 C 0.164 3.836 15 C -0.511 4.511 16 H 0.061 0.939 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.003 3.997 24 C -0.155 4.155 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.001 0.999 40 H 0.262 0.738 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.984 17.511 17.579 26.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.183 4.183 4 C -0.095 4.095 5 C -0.237 4.237 6 C 0.094 3.906 7 O -0.217 6.217 8 C -0.013 4.013 9 C -0.014 4.014 10 O -0.289 6.289 11 C -0.007 4.007 12 C -0.124 4.124 13 N -0.202 5.202 14 C 0.037 3.963 15 C -0.550 4.550 16 H 0.079 0.921 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.126 4.126 24 C -0.173 4.173 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.018 0.982 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.952 16.737 17.435 25.773 hybrid contribution 1.014 0.574 -0.790 1.407 sum -7.938 17.311 16.646 25.293 Atomic orbital electron populations 1.20814 0.90785 1.03082 1.02490 1.19711 0.96050 0.92284 0.96854 1.20910 0.94161 0.97479 1.05736 1.20911 0.94182 0.97343 0.97055 1.21262 1.00288 0.92312 1.09815 1.19047 0.91869 0.84856 0.94878 1.86169 1.19852 1.27641 1.88011 1.22910 0.78663 0.97763 1.01989 1.22511 0.98455 0.91716 0.88751 1.88055 1.76402 1.27621 1.36797 1.24444 0.96092 0.81643 0.98484 1.24237 0.97718 0.93468 0.96974 1.68557 1.05786 1.27909 1.17923 1.20189 0.98166 0.96550 0.81362 1.21051 0.93451 1.48419 0.92056 0.92078 1.25003 0.97166 0.95463 0.96959 1.69952 1.30036 1.50047 1.03634 0.86534 0.84218 0.78890 0.77621 1.20130 1.21285 1.20264 1.24132 0.95155 0.95772 0.97585 1.20329 0.90997 0.98704 1.07289 0.90941 0.91326 0.91198 0.86105 0.85894 0.85543 0.90736 0.90950 0.92325 0.91063 0.89377 0.90764 0.90432 0.94895 0.98163 0.92799 0.90013 0.91099 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.05 -0.47 5.88 -104.65 -0.62 -1.09 16 3 C -0.16 -1.48 9.70 -39.56 -0.38 -1.87 16 4 C -0.08 -0.70 10.04 -39.60 -0.40 -1.10 16 5 C -0.22 -2.27 9.04 -39.43 -0.36 -2.62 16 6 C 0.14 1.70 6.69 -39.22 -0.26 1.44 16 7 O -0.30 -4.03 10.10 -24.25 -0.24 -4.28 16 8 C 0.06 0.66 5.12 37.16 0.19 0.85 16 9 C 0.06 0.73 6.17 37.16 0.23 0.95 16 10 O -0.37 -5.96 10.33 -40.08 -0.41 -6.38 16 11 C 0.05 0.85 4.48 -25.80 -0.12 0.74 16 12 C 0.01 0.10 7.32 -2.63 -0.02 0.09 16 13 N -0.48 -10.79 6.25 -239.77 -1.50 -12.29 16 14 C 0.16 4.43 4.58 -4.98 -0.02 4.41 16 15 C -0.51 -14.78 8.84 -34.44 -0.30 -15.09 16 16 H 0.06 1.74 7.80 -52.49 -0.41 1.33 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 19 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.00 0.05 7.81 -2.76 -0.02 0.03 16 24 C -0.15 -1.76 9.64 -39.43 -0.38 -2.14 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 29 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.13 1.09 6.30 -52.49 -0.33 0.76 16 31 H 0.07 0.58 7.65 -51.93 -0.40 0.18 16 32 H 0.07 0.78 7.67 -51.93 -0.40 0.38 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.27 7.89 -51.93 -0.41 0.86 16 36 H 0.07 1.60 7.79 -51.93 -0.40 1.19 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.03 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.00 0.02 7.70 -51.93 -0.40 -0.38 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 42 H 0.07 1.43 7.79 -51.93 -0.40 1.03 16 43 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -32.90 359.69 -10.15 -43.05 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.93 Total: -1.68 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -2.20 Total: -14.31 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.76 Total: -38.78 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -0.66 Total: -10.65 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.90 -10.15 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224410012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.935 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds