Wall clock time and date at job start Tue Mar 31 2020 06:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38281 * 119.97457 * 2 1 4 4 C 1.38244 * 120.11478 * 180.02562 * 3 2 1 5 5 C 1.38170 * 120.05335 * 359.67740 * 4 3 2 6 6 C 1.38715 * 119.94364 * 0.57995 * 5 4 3 7 7 O 1.35892 * 120.05917 * 179.72155 * 6 5 4 8 8 C 1.42899 * 117.00033 * 359.72248 * 7 6 5 9 9 C 1.52997 * 109.47457 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.47264 * 64.99865 * 9 8 7 11 11 C 1.42901 * 114.00134 * 179.97438 * 10 9 8 12 12 C 1.53932 * 113.73261 * 248.76575 * 11 10 9 13 13 N 1.48192 * 86.09968 * 221.95637 * 12 11 10 14 14 C 1.46899 * 111.06569 * 137.52066 * 13 12 11 15 15 C 1.50695 * 109.47108 * 70.57161 * 14 13 12 16 16 H 1.07993 * 120.00262 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00281 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99693 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00263 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46894 * 60.00390 * 19 17 15 21 21 H 1.48498 * 109.47198 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47260 * 300.00122 * 19 17 15 23 23 C 1.47957 * 90.79732 * 24.60361 * 13 12 11 24 24 C 1.38127 * 119.97147 * 179.97438 * 2 1 3 25 25 H 1.09006 * 109.46598 * 270.01974 * 1 2 3 26 26 H 1.08997 * 109.46955 * 30.01840 * 1 2 3 27 27 H 1.08996 * 109.47328 * 150.02234 * 1 2 3 28 28 H 1.08000 * 119.94471 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.97717 * 179.97438 * 4 3 2 30 30 H 1.07997 * 120.03054 * 180.29671 * 5 4 3 31 31 H 1.09004 * 109.47487 * 60.00041 * 8 7 6 32 32 H 1.09002 * 109.46902 * 300.00335 * 8 7 6 33 33 H 1.09001 * 109.47289 * 304.99698 * 9 8 7 34 34 H 1.09004 * 109.47261 * 184.99954 * 9 8 7 35 35 H 1.09001 * 112.93357 * 20.33418 * 11 10 9 36 36 H 1.09001 * 113.76149 * 336.24171 * 12 11 10 37 37 H 1.09006 * 113.75754 * 107.60738 * 12 11 10 38 38 H 1.09007 * 109.46682 * 190.56863 * 14 13 12 39 39 H 1.09000 * 109.47934 * 310.56740 * 14 13 12 40 40 H 0.97000 * 120.00246 * 179.97438 * 18 17 15 41 41 H 1.09007 * 113.76128 * 221.08459 * 23 13 12 42 42 H 1.08997 * 113.76440 * 89.71992 * 23 13 12 43 43 H 1.08006 * 120.02745 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 -0.0005 5 6 4.2752 0.0070 0.0057 6 6 3.5846 -1.1960 0.0003 7 8 4.2657 -2.3719 0.0006 8 6 5.6926 -2.2951 0.0006 9 6 6.2794 -3.7081 0.0003 10 8 5.9362 -4.3663 -1.2208 11 6 6.4390 -5.7000 -1.3235 12 6 7.5419 -5.8663 -2.3844 13 7 6.8599 -7.1303 -2.7490 14 6 6.7903 -7.2910 -4.2076 15 6 8.1684 -7.5734 -4.7481 16 1 9.0116 -7.6275 -4.0755 17 6 8.3528 -7.7625 -6.1013 18 7 7.3261 -7.6961 -6.9205 19 14 10.0611 -8.1118 -6.7714 20 1 10.5873 -9.3586 -6.1599 21 1 9.9907 -8.2756 -8.2456 22 1 10.9634 -6.9795 -6.4412 23 6 5.5801 -6.6193 -2.2104 24 6 2.1970 -1.1966 0.0005 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6566 2.1324 0.0004 29 1 4.1177 2.1381 -0.0010 30 1 5.3552 0.0101 0.0101 31 1 6.0279 -1.7622 0.8904 32 1 6.0277 -1.7627 -0.8896 33 1 5.8745 -4.2698 0.8421 34 1 7.3643 -3.6510 0.0899 35 1 6.6916 -6.1343 -0.3562 36 1 7.5143 -5.1101 -3.1689 37 1 8.5376 -6.0086 -1.9641 38 1 6.1276 -8.1218 -4.4503 39 1 6.4046 -6.3756 -4.6561 40 1 7.4558 -7.8288 -7.8726 41 1 5.0110 -7.3622 -1.6513 42 1 4.9773 -6.0839 -2.9439 43 1 1.6570 -2.1319 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224410012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:30 Heat of formation + Delta-G solvation = -49.209256 kcal Electronic energy + Delta-G solvation = -22090.013543 eV Core-core repulsion = 18714.723709 eV Total energy + Delta-G solvation = -3375.289834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.16553 -40.81442 -38.82577 -37.63898 -35.00268 -33.40839 -32.21438 -30.98447 -29.96750 -27.85109 -27.29028 -26.67213 -24.27372 -23.46818 -23.40469 -21.78529 -20.84823 -18.90703 -18.65169 -18.18756 -17.30739 -16.99127 -16.80845 -16.61681 -16.23899 -16.14098 -15.34866 -15.20505 -14.85955 -14.60309 -14.42477 -14.18168 -13.92635 -13.82798 -13.59955 -13.26559 -13.05782 -12.93130 -12.79986 -12.61347 -12.54980 -12.35193 -12.24964 -12.10071 -11.82589 -11.65919 -11.47320 -11.20403 -10.67456 -10.47210 -9.73912 -9.67292 -9.13282 -8.26025 -6.37898 0.36445 0.49980 1.38251 1.42565 1.50648 2.21863 2.36550 2.56721 2.80478 3.06666 3.27561 3.51682 3.78995 3.90921 3.96657 4.08681 4.09617 4.15555 4.23487 4.34515 4.42450 4.47429 4.55258 4.55490 4.56480 4.66884 4.70562 4.76221 4.82957 4.87614 4.88733 4.95227 5.02733 5.10979 5.24067 5.37579 5.47272 5.49648 5.65764 5.72653 5.88533 6.06556 6.25857 6.33611 6.48512 6.76622 7.32073 8.85989 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023826 B = 0.002435 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.910763 B =11496.615986 C =11680.078620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.055 4.055 3 C -0.168 4.168 4 C -0.080 4.080 5 C -0.227 4.227 6 C 0.113 3.887 7 O -0.330 6.330 8 C 0.059 3.941 9 C 0.055 3.945 10 O -0.394 6.394 11 C 0.082 3.918 12 C 0.000 4.000 13 N -0.489 5.489 14 C 0.179 3.821 15 C -0.531 4.531 16 H 0.064 0.936 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.976 3.024 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.265 1.265 23 C -0.005 4.005 24 C -0.179 4.179 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.141 0.859 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.048 0.952 37 H 0.094 0.906 38 H 0.002 0.998 39 H -0.031 1.031 40 H 0.266 0.734 41 H 0.104 0.896 42 H 0.050 0.950 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.815 18.876 19.212 28.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.056 4.056 3 C -0.186 4.186 4 C -0.098 4.098 5 C -0.246 4.246 6 C 0.068 3.932 7 O -0.244 6.244 8 C -0.015 4.015 9 C -0.021 4.021 10 O -0.313 6.313 11 C 0.024 3.976 12 C -0.129 4.129 13 N -0.213 5.213 14 C 0.052 3.948 15 C -0.569 4.569 16 H 0.082 0.918 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.799 3.201 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.190 1.190 23 C -0.134 4.134 24 C -0.198 4.198 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.164 0.836 29 H 0.167 0.833 30 H 0.159 0.841 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.141 0.859 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.021 0.979 39 H -0.013 1.013 40 H 0.075 0.925 41 H 0.122 0.878 42 H 0.068 0.932 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.790 18.117 19.098 27.453 hybrid contribution 0.562 0.239 -1.243 1.385 sum -7.228 18.356 17.855 26.608 Atomic orbital electron populations 1.20868 0.89016 1.03731 1.03438 1.20064 0.97488 0.91965 0.96034 1.21288 0.94459 0.98201 1.04679 1.21298 0.94566 0.97976 0.95972 1.21498 1.01161 0.92136 1.09760 1.19327 0.92308 0.85239 0.96312 1.86117 1.21094 1.28690 1.88528 1.23066 0.77746 0.97504 1.03222 1.22865 1.00229 0.91887 0.87162 1.88031 1.76500 1.27253 1.39497 1.24090 0.92903 0.82024 0.98579 1.24277 0.99633 0.91462 0.97555 1.68450 1.08381 1.30050 1.14389 1.19832 0.96875 0.93733 0.84377 1.21375 0.94075 1.48758 0.92713 0.91818 1.26023 1.01843 0.94834 0.97207 1.70093 1.32643 1.50691 1.04074 0.85345 0.78551 0.79244 0.76949 1.19057 1.20650 1.19000 1.24215 0.94249 0.97076 0.97852 1.20527 0.91221 0.99374 1.08651 0.89749 0.89838 0.91396 0.83630 0.83283 0.84141 0.87544 0.91545 0.90984 0.88494 0.85881 0.93329 0.88755 0.97948 1.01347 0.92510 0.87757 0.93154 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 71.24 0.71 -0.72 16 2 C -0.06 -1.03 5.88 -19.88 -0.12 -1.14 16 3 C -0.17 -2.72 9.70 22.28 0.22 -2.51 16 4 C -0.08 -1.32 10.04 22.26 0.22 -1.10 16 5 C -0.23 -4.49 9.04 22.37 0.20 -4.29 16 6 C 0.11 2.78 6.69 22.51 0.15 2.93 16 7 O -0.33 -8.78 10.10 -87.71 -0.89 -9.67 16 8 C 0.06 1.19 5.12 71.98 0.37 1.55 16 9 C 0.05 1.15 6.17 71.98 0.44 1.59 16 10 O -0.39 -12.36 10.33 -144.35 -1.49 -13.85 16 11 C 0.08 2.63 4.48 31.24 0.14 2.77 16 12 C 0.00 0.00 7.32 86.36 0.63 0.63 16 13 N -0.49 -22.44 6.25 -915.70 -5.72 -28.17 16 14 C 0.18 10.16 4.58 85.56 0.39 10.55 16 15 C -0.53 -31.35 8.84 25.60 0.23 -31.12 16 16 H 0.06 3.64 7.80 -2.91 -0.02 3.62 16 17 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 18 N -0.94 -58.16 13.29 21.45 0.28 -57.88 16 19 Si 0.98 45.10 29.54 68.60 2.03 47.13 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 23 C 0.00 -0.19 7.81 86.41 0.67 0.48 16 24 C -0.18 -4.16 9.64 22.37 0.22 -3.95 16 25 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 27 H 0.07 0.87 8.08 -2.39 -0.02 0.85 16 28 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 29 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 30 H 0.14 2.22 6.30 -2.91 -0.02 2.20 16 31 H 0.11 1.41 7.65 -2.38 -0.02 1.40 16 32 H 0.07 1.38 7.67 -2.39 -0.02 1.36 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.12 3.12 7.89 -2.39 -0.02 3.10 16 36 H 0.05 2.16 7.79 -2.39 -0.02 2.14 16 37 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 38 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 39 H -0.03 -1.92 7.70 -2.39 -0.02 -1.94 16 40 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.10 3.50 8.14 -2.38 -0.02 3.48 16 42 H 0.05 2.14 7.79 -2.39 -0.02 2.12 16 43 H 0.12 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -73.58 359.69 0.13 -73.45 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.97 Total: 12.90 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 4.94 Total: -23.91 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -5.44 Total: -86.05 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -2.38 Total: -23.52 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -73.58 0.13 -73.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224410012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.242 kcal (2) G-P(sol) polarization free energy of solvation -73.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds