Wall clock time and date at job start Tue Mar 31 2020 07:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38153 * 119.99784 * 2 1 4 4 C 1.38677 * 119.99783 * 180.02562 * 3 2 1 5 5 O 1.35978 * 119.99936 * 180.02562 * 4 3 2 6 6 C 1.38726 * 119.99717 * 359.97438 * 4 3 2 7 7 C 1.50697 * 119.99392 * 179.97438 * 6 4 3 8 8 C 1.38103 * 119.99976 * 359.72844 * 6 4 3 9 9 C 1.50702 * 119.99643 * 180.29493 * 8 6 4 10 10 C 1.38673 * 119.99634 * 180.02562 * 2 1 3 11 11 O 1.35982 * 120.00755 * 359.97438 * 10 2 1 12 12 C 1.42898 * 116.99943 * 89.98946 * 11 10 2 13 13 H 1.08993 * 110.89222 * 333.88832 * 12 11 10 14 14 C 1.55159 * 111.00519 * 210.00133 * 12 11 10 15 15 C 1.54317 * 102.94305 * 206.38942 * 14 12 11 16 16 N 1.47016 * 107.27340 * 22.19881 * 15 14 12 17 17 C 1.36942 * 125.65288 * 181.02187 * 16 15 14 18 18 H 1.07997 * 120.00223 * 189.86021 * 17 16 15 19 19 C 1.38816 * 119.99484 * 9.86482 * 17 16 15 20 20 N 1.31621 * 119.99698 * 208.77250 * 19 17 16 21 21 Si 1.86802 * 120.00167 * 29.04717 * 19 17 16 22 22 H 1.48491 * 109.47398 * 275.03019 * 21 19 17 23 23 H 1.48507 * 109.46925 * 35.03216 * 21 19 17 24 24 H 1.48497 * 109.47110 * 155.02613 * 21 19 17 25 25 C 1.47425 * 108.70453 * 1.28067 * 16 15 14 26 26 H 1.09003 * 109.47234 * 269.98137 * 1 2 3 27 27 H 1.09000 * 109.47023 * 29.98427 * 1 2 3 28 28 H 1.09003 * 109.46981 * 149.98136 * 1 2 3 29 29 H 1.07998 * 119.99775 * 0.03798 * 3 2 1 30 30 H 0.96702 * 114.00280 * 89.99689 * 5 4 3 31 31 H 1.08997 * 109.47385 * 90.00223 * 7 6 4 32 32 H 1.09006 * 109.46931 * 209.99965 * 7 6 4 33 33 H 1.09003 * 109.47400 * 329.99787 * 7 6 4 34 34 H 1.09002 * 109.47489 * 270.25222 * 9 8 6 35 35 H 1.08999 * 109.47188 * 30.25781 * 9 8 6 36 36 H 1.09002 * 109.47256 * 150.25433 * 9 8 6 37 37 H 1.08999 * 110.71461 * 88.02548 * 14 12 11 38 38 H 1.09004 * 110.87229 * 324.82458 * 14 12 11 39 39 H 1.09000 * 109.88341 * 262.77490 * 15 14 12 40 40 H 1.09000 * 110.01115 * 141.68373 * 15 14 12 41 41 H 0.96994 * 119.99751 * 5.08830 * 20 19 17 42 42 H 1.09000 * 110.36411 * 94.48484 * 25 16 15 43 43 H 1.08996 * 110.37033 * 216.81256 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1965 0.0000 4 6 3.5846 1.1965 -0.0005 5 8 4.2645 2.3741 0.0000 6 6 4.2781 -0.0050 -0.0005 7 6 5.7851 -0.0049 -0.0017 8 6 3.5876 -1.2009 0.0057 9 6 4.3411 -2.5060 0.0124 10 6 2.2004 -1.2010 -0.0005 11 8 1.5205 -2.3787 -0.0005 12 6 1.1955 -2.9401 -1.2738 13 1 1.1261 -2.1631 -2.0349 14 6 -0.1167 -3.7647 -1.1994 15 6 0.0528 -4.7879 -2.3421 16 7 1.4929 -4.9045 -2.6135 17 6 2.0626 -5.6983 -3.5731 18 1 3.1333 -5.8383 -3.5923 19 6 1.2637 -6.3228 -4.5212 20 7 1.6458 -7.4635 -5.0552 21 14 -0.3498 -5.5404 -5.0446 22 1 -1.4206 -5.9298 -4.0925 23 1 -0.2047 -4.0624 -5.0490 24 1 -0.7064 -6.0067 -6.4086 25 6 2.2228 -4.0302 -1.6775 26 1 -0.3634 -0.0003 1.0277 27 1 -0.3633 0.8901 -0.5136 28 1 -0.3633 -0.8898 -0.5141 29 1 1.6577 2.1317 0.0006 30 1 4.4614 2.7142 0.8835 31 1 6.1493 -0.0045 1.0256 32 1 6.1481 -0.8951 -0.5154 33 1 6.1481 0.8849 -0.5163 34 1 4.5267 -2.8238 -1.0136 35 1 5.2915 -2.3742 0.5295 36 1 3.7501 -3.2642 0.5262 37 1 -0.9830 -3.1276 -1.3775 38 1 -0.2032 -4.2711 -0.2380 39 1 -0.4654 -4.4364 -3.2343 40 1 -0.3468 -5.7555 -2.0386 41 1 2.4475 -7.9049 -4.7340 42 1 2.5434 -4.5953 -0.8023 43 1 3.0814 -3.5769 -2.1728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229771250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:18 Heat of formation + Delta-G solvation = -34.700181 kcal Electronic energy + Delta-G solvation = -24027.375016 eV Core-core repulsion = 20652.714342 eV Total energy + Delta-G solvation = -3374.660673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.61223 -38.79857 -37.18013 -35.76125 -34.37576 -32.48494 -30.54921 -29.54218 -29.29943 -28.30685 -26.53482 -24.91252 -23.88807 -21.99245 -20.93827 -20.59085 -20.15826 -18.04610 -17.54758 -17.35561 -16.85338 -15.66816 -15.30101 -15.14210 -14.15130 -13.84601 -13.80092 -13.46835 -13.44768 -13.33663 -13.10641 -12.92848 -12.88747 -12.77149 -12.55084 -12.27325 -12.09058 -11.81303 -11.58748 -11.32703 -11.21811 -11.10689 -10.96026 -10.59376 -10.54782 -10.17395 -9.64819 -9.47410 -9.17702 -8.57323 -8.46268 -8.28180 -7.10369 -6.38479 -3.19747 1.01294 1.17870 3.19861 3.42690 3.52195 3.69706 3.87109 4.07766 4.61885 4.64639 4.69742 4.91889 4.95538 5.09358 5.13275 5.28680 5.32085 5.35177 5.41300 5.43794 5.47802 5.52318 5.57921 5.66569 5.66985 5.73929 5.83978 5.86252 6.01156 6.04703 6.16893 6.20550 6.25645 6.34958 6.44061 6.45037 6.51265 6.53608 6.69183 6.75777 7.45705 7.64452 7.78549 8.32094 8.99887 9.55660 10.21999 11.10750 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.004425 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.428450 B = 6325.880500 C = 6928.074471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.091 4.091 3 C -0.138 4.138 4 C 0.098 3.902 5 O -0.496 6.496 6 C -0.107 4.107 7 C -0.112 4.112 8 C -0.079 4.079 9 C -0.119 4.119 10 C 0.097 3.903 11 O -0.322 6.322 12 C 0.076 3.924 13 H 0.072 0.928 14 C -0.124 4.124 15 C 0.120 3.880 16 N -0.606 5.606 17 C -0.333 4.333 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.911 5.911 21 Si 1.052 2.948 22 H -0.292 1.292 23 H -0.294 1.294 24 H -0.298 1.298 25 C 0.121 3.879 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.129 0.871 30 H 0.386 0.614 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.029 0.971 40 H 0.045 0.955 41 H 0.265 0.735 42 H 0.037 0.963 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.148 17.939 14.053 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.092 4.092 3 C -0.157 4.157 4 C 0.054 3.946 5 O -0.305 6.305 6 C -0.108 4.108 7 C -0.168 4.168 8 C -0.080 4.080 9 C -0.175 4.175 10 C 0.053 3.947 11 O -0.238 6.238 12 C 0.019 3.981 13 H 0.090 0.910 14 C -0.162 4.162 15 C -0.005 4.005 16 N -0.335 5.335 17 C -0.459 4.459 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.550 5.550 21 Si 0.885 3.115 22 H -0.220 1.220 23 H -0.222 1.222 24 H -0.226 1.226 25 C -0.005 4.005 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.147 0.853 30 H 0.241 0.759 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.845 17.537 12.467 21.534 hybrid contribution 1.314 0.512 1.341 1.946 sum 2.159 18.049 13.808 22.828 Atomic orbital electron populations 1.20701 0.90411 1.02961 1.02581 1.20037 0.96823 0.91901 1.00395 1.21071 0.93184 0.97816 1.03610 1.18174 0.89586 0.84709 1.02155 1.84817 1.76438 1.36081 1.33188 1.19905 0.96661 0.91558 1.02644 1.20702 0.90591 1.03387 1.02137 1.19998 0.92934 0.95462 0.99576 1.20899 0.99531 0.93898 1.03173 1.18347 0.89354 0.85497 1.01522 1.86009 1.73807 1.34375 1.29639 1.23834 0.96471 0.94868 0.82895 0.90988 1.22699 0.95706 0.97552 1.00254 1.21631 0.87411 0.96839 0.94586 1.44717 1.00247 1.49918 1.38640 1.20019 0.93893 1.23409 1.08613 0.90381 1.25750 1.03616 0.96105 0.95799 1.70891 1.25232 1.12365 1.46533 0.83985 0.76445 0.75269 0.75791 1.22004 1.22170 1.22561 1.22155 0.94084 0.90499 0.93798 0.90898 0.91660 0.90919 0.85299 0.75931 0.91405 0.91021 0.90944 0.90440 0.91455 0.90260 0.91012 0.90107 0.95407 0.93690 0.92532 0.94543 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.79 36.01 0.35 -0.87 16 2 C -0.09 -1.19 5.89 -104.49 -0.62 -1.81 16 3 C -0.14 -1.64 9.64 -39.45 -0.38 -2.02 16 4 C 0.10 1.17 6.68 -39.24 -0.26 0.91 16 5 O -0.50 -4.94 12.54 -19.67 -0.25 -5.18 16 6 C -0.11 -1.33 5.89 -104.49 -0.62 -1.95 16 7 C -0.11 -1.11 8.96 36.00 0.32 -0.79 16 8 C -0.08 -1.10 5.89 -104.49 -0.62 -1.72 16 9 C -0.12 -1.56 7.75 36.01 0.28 -1.28 16 10 C 0.10 1.44 5.54 -39.24 -0.22 1.22 16 11 O -0.32 -5.19 8.13 -19.68 -0.16 -5.35 16 12 C 0.08 1.33 2.90 -24.46 -0.07 1.26 16 13 H 0.07 1.30 7.93 -51.93 -0.41 0.88 16 14 C -0.12 -2.15 6.68 -24.90 -0.17 -2.31 16 15 C 0.12 2.66 5.00 -3.07 -0.02 2.64 16 16 N -0.61 -15.12 3.28 -169.94 -0.56 -15.68 16 17 C -0.33 -9.59 10.41 -15.06 -0.16 -9.75 16 18 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 19 C -0.01 -0.33 5.41 -17.43 -0.09 -0.43 16 20 N -0.91 -28.45 13.70 55.49 0.76 -27.69 16 21 Si 1.05 26.73 24.74 -169.99 -4.21 22.52 16 22 H -0.29 -6.95 6.76 56.52 0.38 -6.57 16 23 H -0.29 -7.19 6.86 56.52 0.39 -6.80 16 24 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 25 C 0.12 2.50 5.50 -2.41 -0.01 2.48 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 28 H 0.07 0.88 6.90 -51.93 -0.36 0.53 16 29 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.39 1.95 9.06 45.56 0.41 2.37 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.71 6.72 -51.93 -0.35 0.36 16 33 H 0.07 0.70 7.53 -51.93 -0.39 0.31 16 34 H 0.08 1.09 6.69 -51.93 -0.35 0.74 16 35 H 0.07 0.73 6.72 -51.93 -0.35 0.38 16 36 H 0.08 1.11 6.84 -51.93 -0.36 0.76 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.03 0.65 3.71 -51.93 -0.19 0.46 16 40 H 0.05 1.03 8.01 -51.93 -0.42 0.61 16 41 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 42 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 43 H 0.05 0.95 6.82 -51.93 -0.35 0.60 16 LS Contribution 335.08 15.07 5.05 5.05 Total: -1.00 -32.98 335.08 -7.28 -40.26 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.65 Total: 0.49 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -2.27 Total: -14.42 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.20 Total: -43.37 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.41 Total: -10.54 kcal Atomic # 14 Polarization: 26.73 SS G_CDS: -4.21 Total: 22.52 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.98 -7.28 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229771250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.562 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds