Wall clock time and date at job start Tue Mar 31 2020 07:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38153 * 119.99784 * 2 1 4 4 C 1.38677 * 119.99783 * 180.02562 * 3 2 1 5 5 O 1.35978 * 119.99936 * 180.02562 * 4 3 2 6 6 C 1.38726 * 119.99717 * 359.97438 * 4 3 2 7 7 C 1.50697 * 119.99392 * 179.97438 * 6 4 3 8 8 C 1.38103 * 119.99976 * 359.72844 * 6 4 3 9 9 C 1.50702 * 119.99643 * 180.29493 * 8 6 4 10 10 C 1.38673 * 119.99634 * 180.02562 * 2 1 3 11 11 O 1.35982 * 120.00755 * 359.97438 * 10 2 1 12 12 C 1.42898 * 116.99943 * 89.98946 * 11 10 2 13 13 H 1.08993 * 110.89222 * 333.88832 * 12 11 10 14 14 C 1.55159 * 111.00519 * 210.00133 * 12 11 10 15 15 C 1.54317 * 102.94305 * 206.38942 * 14 12 11 16 16 N 1.47016 * 107.27340 * 22.19881 * 15 14 12 17 17 C 1.36942 * 125.65288 * 181.02187 * 16 15 14 18 18 H 1.07997 * 120.00223 * 189.86021 * 17 16 15 19 19 C 1.38816 * 119.99484 * 9.86482 * 17 16 15 20 20 N 1.31621 * 119.99698 * 208.77250 * 19 17 16 21 21 Si 1.86802 * 120.00167 * 29.04717 * 19 17 16 22 22 H 1.48491 * 109.47398 * 275.03019 * 21 19 17 23 23 H 1.48507 * 109.46925 * 35.03216 * 21 19 17 24 24 H 1.48497 * 109.47110 * 155.02613 * 21 19 17 25 25 C 1.47425 * 108.70453 * 1.28067 * 16 15 14 26 26 H 1.09003 * 109.47234 * 269.98137 * 1 2 3 27 27 H 1.09000 * 109.47023 * 29.98427 * 1 2 3 28 28 H 1.09003 * 109.46981 * 149.98136 * 1 2 3 29 29 H 1.07998 * 119.99775 * 0.03798 * 3 2 1 30 30 H 0.96702 * 114.00280 * 89.99689 * 5 4 3 31 31 H 1.08997 * 109.47385 * 90.00223 * 7 6 4 32 32 H 1.09006 * 109.46931 * 209.99965 * 7 6 4 33 33 H 1.09003 * 109.47400 * 329.99787 * 7 6 4 34 34 H 1.09002 * 109.47489 * 270.25222 * 9 8 6 35 35 H 1.08999 * 109.47188 * 30.25781 * 9 8 6 36 36 H 1.09002 * 109.47256 * 150.25433 * 9 8 6 37 37 H 1.08999 * 110.71461 * 88.02548 * 14 12 11 38 38 H 1.09004 * 110.87229 * 324.82458 * 14 12 11 39 39 H 1.09000 * 109.88341 * 262.77490 * 15 14 12 40 40 H 1.09000 * 110.01115 * 141.68373 * 15 14 12 41 41 H 0.96994 * 119.99751 * 5.08830 * 20 19 17 42 42 H 1.09000 * 110.36411 * 94.48484 * 25 16 15 43 43 H 1.08996 * 110.37033 * 216.81256 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1965 0.0000 4 6 3.5846 1.1965 -0.0005 5 8 4.2645 2.3741 0.0000 6 6 4.2781 -0.0050 -0.0005 7 6 5.7851 -0.0049 -0.0017 8 6 3.5876 -1.2009 0.0057 9 6 4.3411 -2.5060 0.0124 10 6 2.2004 -1.2010 -0.0005 11 8 1.5205 -2.3787 -0.0005 12 6 1.1955 -2.9401 -1.2738 13 1 1.1261 -2.1631 -2.0349 14 6 -0.1167 -3.7647 -1.1994 15 6 0.0528 -4.7879 -2.3421 16 7 1.4929 -4.9045 -2.6135 17 6 2.0626 -5.6983 -3.5731 18 1 3.1333 -5.8383 -3.5923 19 6 1.2637 -6.3228 -4.5212 20 7 1.6458 -7.4635 -5.0552 21 14 -0.3498 -5.5404 -5.0446 22 1 -1.4206 -5.9298 -4.0925 23 1 -0.2047 -4.0624 -5.0490 24 1 -0.7064 -6.0067 -6.4086 25 6 2.2228 -4.0302 -1.6775 26 1 -0.3634 -0.0003 1.0277 27 1 -0.3633 0.8901 -0.5136 28 1 -0.3633 -0.8898 -0.5141 29 1 1.6577 2.1317 0.0006 30 1 4.4614 2.7142 0.8835 31 1 6.1493 -0.0045 1.0256 32 1 6.1481 -0.8951 -0.5154 33 1 6.1481 0.8849 -0.5163 34 1 4.5267 -2.8238 -1.0136 35 1 5.2915 -2.3742 0.5295 36 1 3.7501 -3.2642 0.5262 37 1 -0.9830 -3.1276 -1.3775 38 1 -0.2032 -4.2711 -0.2380 39 1 -0.4654 -4.4364 -3.2343 40 1 -0.3468 -5.7555 -2.0386 41 1 2.4475 -7.9049 -4.7340 42 1 2.5434 -4.5953 -0.8023 43 1 3.0814 -3.5769 -2.1728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229771250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:16 Heat of formation + Delta-G solvation = -57.124983 kcal Electronic energy + Delta-G solvation = -24028.347428 eV Core-core repulsion = 20652.714342 eV Total energy + Delta-G solvation = -3375.633086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.63789 -40.01167 -38.51639 -36.91108 -35.31743 -34.56245 -31.80865 -31.01334 -30.20370 -29.86785 -27.67125 -26.02564 -25.54674 -23.09124 -22.62207 -21.89080 -21.40112 -19.61658 -19.02031 -18.44393 -17.85566 -17.31501 -16.58929 -16.24234 -15.81992 -15.27231 -15.16471 -14.88879 -14.56784 -14.47614 -14.27383 -14.11161 -14.00641 -13.82351 -13.69427 -13.49779 -13.19064 -13.09457 -13.06131 -12.76499 -12.61490 -12.43837 -12.22965 -11.96189 -11.82910 -11.55130 -11.50010 -11.21170 -10.76229 -10.62177 -9.53089 -9.25588 -9.17944 -8.72198 -5.45505 0.02917 0.23216 1.39305 1.50657 1.70562 2.16263 2.52131 2.75659 2.97159 3.23794 3.41936 3.61628 3.73415 3.76075 3.81989 3.96532 4.05188 4.16536 4.24381 4.33054 4.50361 4.55889 4.57633 4.60600 4.72889 4.73894 4.78746 4.79620 4.83498 4.85433 4.90139 4.95781 5.07504 5.13107 5.14821 5.29233 5.33796 5.42096 5.52640 5.55722 5.69779 6.06328 6.53051 6.76962 6.85643 7.41448 8.06898 8.78670 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.004425 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.428450 B = 6325.880500 C = 6928.074471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.141 4.141 4 C 0.105 3.895 5 O -0.500 6.500 6 C -0.118 4.118 7 C -0.109 4.109 8 C -0.094 4.094 9 C -0.114 4.114 10 C 0.062 3.938 11 O -0.319 6.319 12 C 0.092 3.908 13 H 0.071 0.929 14 C -0.111 4.111 15 C 0.110 3.890 16 N -0.628 5.628 17 C -0.328 4.328 18 H 0.045 0.955 19 C -0.065 4.065 20 N -0.945 5.945 21 Si 1.097 2.903 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.303 1.303 25 C 0.120 3.880 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.152 0.848 30 H 0.409 0.591 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.028 0.972 40 H 0.035 0.965 41 H 0.251 0.749 42 H 0.034 0.966 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.748 21.084 15.544 26.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.094 4.094 3 C -0.160 4.160 4 C 0.061 3.939 5 O -0.313 6.313 6 C -0.119 4.119 7 C -0.165 4.165 8 C -0.094 4.094 9 C -0.170 4.170 10 C 0.018 3.982 11 O -0.236 6.236 12 C 0.036 3.964 13 H 0.089 0.911 14 C -0.149 4.149 15 C -0.015 4.015 16 N -0.357 5.357 17 C -0.456 4.456 18 H 0.063 0.937 19 C -0.260 4.260 20 N -0.587 5.587 21 Si 0.923 3.077 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.232 1.232 25 C -0.005 4.005 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.170 0.830 30 H 0.268 0.732 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.543 20.724 14.024 25.029 hybrid contribution 1.947 -0.356 0.983 2.210 sum 1.404 20.368 15.007 25.338 Atomic orbital electron populations 1.20759 0.89001 1.03375 1.03494 1.20280 0.97991 0.91553 0.99542 1.21341 0.93342 0.98318 1.02960 1.18286 0.89873 0.85126 1.00657 1.84758 1.76122 1.35097 1.35317 1.20171 0.97906 0.91329 1.02474 1.20726 0.89072 1.03368 1.03372 1.20132 0.93023 0.96070 1.00199 1.20825 1.00408 0.93611 1.02149 1.18627 0.89835 0.85557 1.04132 1.86019 1.73980 1.35312 1.28244 1.23448 0.95205 0.93863 0.83913 0.91115 1.22663 0.96672 0.96667 0.98857 1.21816 0.85347 0.97923 0.96374 1.44774 1.02256 1.50454 1.38183 1.19901 0.92694 1.23556 1.09487 0.93671 1.26982 1.07024 0.95886 0.96143 1.70994 1.25545 1.13983 1.48170 0.83406 0.73512 0.75181 0.75558 1.19054 1.20450 1.23164 1.22212 0.94641 0.91065 0.92615 0.89674 0.89813 0.91899 0.83008 0.73162 0.89478 0.91418 0.90554 0.92130 0.89328 0.91671 0.87395 0.88876 0.95434 0.94678 0.93990 0.94782 0.94553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 9.79 71.24 0.70 -1.40 16 2 C -0.09 -2.21 5.89 -19.78 -0.12 -2.33 16 3 C -0.14 -2.93 9.64 22.35 0.22 -2.71 16 4 C 0.11 2.23 6.68 22.49 0.15 2.38 16 5 O -0.50 -8.30 12.54 -93.30 -1.17 -9.48 16 6 C -0.12 -2.73 5.89 -19.78 -0.12 -2.85 16 7 C -0.11 -1.96 8.96 71.24 0.64 -1.32 16 8 C -0.09 -2.53 5.89 -19.78 -0.12 -2.65 16 9 C -0.11 -3.01 7.75 71.24 0.55 -2.46 16 10 C 0.06 1.76 5.54 22.49 0.12 1.88 16 11 O -0.32 -9.86 8.13 -93.35 -0.76 -10.62 16 12 C 0.09 3.13 2.90 32.07 0.09 3.22 16 13 H 0.07 2.43 7.93 -2.39 -0.02 2.41 16 14 C -0.11 -3.54 6.68 31.78 0.21 -3.32 16 15 C 0.11 4.67 5.00 86.73 0.43 5.11 16 16 N -0.63 -31.53 3.28 -691.56 -2.27 -33.80 16 17 C -0.33 -19.55 10.41 84.03 0.87 -18.68 16 18 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 19 C -0.07 -3.92 5.41 84.86 0.46 -3.46 16 20 N -0.94 -61.02 13.70 21.65 0.30 -60.72 16 21 Si 1.10 53.83 24.74 68.60 1.70 55.53 16 22 H -0.26 -11.73 6.76 99.48 0.67 -11.06 16 23 H -0.28 -12.79 6.86 99.48 0.68 -12.10 16 24 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 25 C 0.12 5.02 5.50 86.93 0.48 5.49 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 28 H 0.06 1.33 6.90 -2.39 -0.02 1.31 16 29 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.41 2.65 9.06 -74.06 -0.67 1.98 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.26 6.72 -2.38 -0.02 1.24 16 33 H 0.08 1.31 7.53 -2.39 -0.02 1.29 16 34 H 0.06 1.78 6.69 -2.39 -0.02 1.76 16 35 H 0.09 1.87 6.72 -2.39 -0.02 1.86 16 36 H 0.06 1.87 6.84 -2.39 -0.02 1.85 16 37 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.09 2.75 8.14 -2.38 -0.02 2.74 16 39 H 0.03 1.21 3.71 -2.39 -0.01 1.20 16 40 H 0.04 1.56 8.01 -2.39 -0.02 1.54 16 41 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16 42 H 0.03 1.44 7.60 -2.39 -0.02 1.42 16 43 H 0.04 1.56 6.82 -2.39 -0.02 1.54 16 Total: -1.00 -72.94 335.08 2.63 -70.31 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.26 Total: 11.87 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 4.58 Total: -23.09 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -1.97 Total: -94.53 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -1.93 Total: -20.10 kcal Atomic # 14 Polarization: 53.83 SS G_CDS: 1.70 Total: 55.53 kcal Total: -72.94 2.63 -70.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229771250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.182 kcal (2) G-P(sol) polarization free energy of solvation -72.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds