Wall clock time and date at job start Tue Mar 31 2020 07:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38144 * 119.99808 * 2 1 4 4 C 1.38676 * 120.00117 * 179.97438 * 3 2 1 5 5 O 1.35981 * 120.00269 * 180.02562 * 4 3 2 6 6 C 1.38722 * 119.99643 * 359.97438 * 4 3 2 7 7 C 1.50699 * 119.99864 * 180.02562 * 6 4 3 8 8 C 1.38105 * 120.00143 * 359.73193 * 6 4 3 9 9 C 1.50697 * 120.00430 * 180.29742 * 8 6 4 10 10 C 1.38678 * 120.00023 * 179.97438 * 2 1 3 11 11 O 1.35985 * 119.99717 * 0.02562 * 10 2 1 12 12 C 1.42906 * 116.99689 * 96.44479 * 11 10 2 13 13 H 1.08999 * 110.88429 * 23.90522 * 12 11 10 14 14 C 1.55150 * 111.00575 * 147.83392 * 12 11 10 15 15 C 1.54329 * 103.02276 * 153.37826 * 14 12 11 16 16 N 1.47027 * 107.26732 * 338.14108 * 15 14 12 17 17 C 1.36932 * 125.65083 * 178.84698 * 16 15 14 18 18 H 1.07996 * 120.00077 * 185.37806 * 17 16 15 19 19 C 1.38811 * 120.00213 * 5.37708 * 17 16 15 20 20 N 1.31623 * 119.99868 * 353.77300 * 19 17 16 21 21 Si 1.86801 * 120.00221 * 173.77052 * 19 17 16 22 22 H 1.48496 * 109.47074 * 275.00784 * 21 19 17 23 23 H 1.48501 * 109.46788 * 35.01031 * 21 19 17 24 24 H 1.48498 * 109.46916 * 155.00725 * 21 19 17 25 25 C 1.47422 * 108.69931 * 358.58401 * 16 15 14 26 26 H 1.08997 * 109.47386 * 275.87326 * 1 2 3 27 27 H 1.09002 * 109.47448 * 35.87176 * 1 2 3 28 28 H 1.09007 * 109.47027 * 155.87058 * 1 2 3 29 29 H 1.08000 * 120.00603 * 359.97438 * 3 2 1 30 30 H 0.96699 * 114.00177 * 89.99935 * 5 4 3 31 31 H 1.08994 * 109.47402 * 89.99998 * 7 6 4 32 32 H 1.09007 * 109.47255 * 210.00614 * 7 6 4 33 33 H 1.09004 * 109.47153 * 330.00158 * 7 6 4 34 34 H 1.09007 * 109.46915 * 270.25210 * 9 8 6 35 35 H 1.09005 * 109.47131 * 30.24562 * 9 8 6 36 36 H 1.08991 * 109.47564 * 150.24949 * 9 8 6 37 37 H 1.09002 * 110.72032 * 271.93981 * 14 12 11 38 38 H 1.09007 * 110.72249 * 35.03242 * 14 12 11 39 39 H 1.09003 * 109.99609 * 218.66433 * 15 14 12 40 40 H 1.09005 * 109.77817 * 97.49728 * 15 14 12 41 41 H 0.96993 * 120.00167 * 179.97438 * 20 19 17 42 42 H 1.09003 * 110.36874 * 143.19565 * 25 16 15 43 43 H 1.09001 * 110.36947 * 265.41028 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1964 0.0000 4 6 3.5845 1.1965 0.0005 5 8 4.2643 2.3741 0.0011 6 6 4.2781 -0.0049 0.0016 7 6 5.7850 -0.0049 0.0028 8 6 3.5876 -1.2009 0.0077 9 6 4.3410 -2.5060 0.0157 10 6 2.2004 -1.2010 0.0005 11 8 1.5204 -2.3786 0.0005 12 6 1.3203 -3.0122 -1.2647 13 1 2.0771 -2.6949 -1.9821 14 6 1.3054 -4.5566 -1.1172 15 6 0.4389 -5.0115 -2.3105 16 7 -0.3905 -3.8650 -2.7098 17 6 -1.2837 -3.8491 -3.7476 18 1 -1.7832 -2.9300 -4.0160 19 6 -1.5471 -5.0143 -4.4546 20 7 -0.8509 -6.1042 -4.2098 21 14 -2.8895 -5.0355 -5.7533 22 1 -4.1997 -5.3005 -5.1066 23 1 -2.9339 -3.7200 -6.4409 24 1 -2.6020 -6.1028 -6.7449 25 6 -0.1058 -2.7374 -1.8038 26 1 -0.3634 0.1052 1.0222 27 1 -0.3634 0.8327 -0.6022 28 1 -0.3633 -0.9379 -0.4201 29 1 1.6578 2.1317 -0.0004 30 1 4.4607 2.7145 0.8846 31 1 6.1476 -0.0044 1.0306 32 1 6.1488 -0.8951 -0.5105 33 1 6.1488 0.8849 -0.5112 34 1 4.5274 -2.8242 -1.0101 35 1 5.2911 -2.3739 0.5334 36 1 3.7496 -3.2639 0.5293 37 1 2.3146 -4.9611 -1.1940 38 1 0.8448 -4.8494 -0.1736 39 1 -0.1984 -5.8441 -2.0124 40 1 1.0805 -5.3114 -3.1391 41 1 -1.0351 -6.9184 -4.7036 42 1 -0.1293 -1.7953 -2.3517 43 1 -0.8252 -2.7174 -0.9852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229771251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:22 Heat of formation + Delta-G solvation = -38.943663 kcal Electronic energy + Delta-G solvation = -23861.188028 eV Core-core repulsion = 20486.343343 eV Total energy + Delta-G solvation = -3374.844685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.52126 -38.64384 -36.93310 -35.56447 -34.31542 -32.26693 -30.37001 -29.41291 -29.16545 -27.50585 -26.58669 -24.74471 -24.37626 -21.95196 -20.53298 -20.28672 -20.13024 -17.97291 -17.27457 -16.99011 -16.75418 -15.36770 -15.03810 -14.58376 -14.40272 -13.88905 -13.57159 -13.41981 -13.23894 -13.17956 -12.97889 -12.83452 -12.74858 -12.50692 -12.15998 -12.00811 -11.95928 -11.73187 -11.43219 -11.16484 -11.01763 -10.88899 -10.77702 -10.48536 -10.29193 -10.11785 -9.84438 -9.73668 -9.31102 -8.60149 -8.51605 -8.17270 -6.86284 -5.74290 -3.07683 1.10142 1.24637 3.29120 3.40262 3.45201 3.46668 3.98537 4.15606 4.50056 4.72247 4.76324 4.98770 5.15619 5.31928 5.37333 5.38157 5.47138 5.48016 5.54881 5.60144 5.65630 5.68330 5.70280 5.74307 5.79260 5.84006 5.92697 6.06284 6.22459 6.30683 6.36475 6.38587 6.43455 6.47466 6.54690 6.62195 6.64540 6.81245 7.51560 7.52442 7.58752 7.77314 7.90616 8.22864 9.18840 9.79011 10.44400 11.37760 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.003894 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.744188 B = 7188.487850 C = 7706.352298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 C -0.137 4.137 4 C 0.095 3.905 5 O -0.496 6.496 6 C -0.109 4.109 7 C -0.110 4.110 8 C -0.090 4.090 9 C -0.114 4.114 10 C 0.100 3.900 11 O -0.323 6.323 12 C 0.079 3.921 13 H 0.069 0.931 14 C -0.140 4.140 15 C 0.178 3.822 16 N -0.603 5.603 17 C -0.231 4.231 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.912 3.088 22 H -0.287 1.287 23 H -0.281 1.281 24 H -0.290 1.290 25 C 0.121 3.879 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.129 0.871 30 H 0.385 0.615 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.253 0.747 42 H 0.040 0.960 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.210 12.110 11.665 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.083 4.083 3 C -0.156 4.156 4 C 0.051 3.949 5 O -0.306 6.306 6 C -0.109 4.109 7 C -0.167 4.167 8 C -0.090 4.090 9 C -0.171 4.171 10 C 0.056 3.944 11 O -0.240 6.240 12 C 0.023 3.977 13 H 0.087 0.913 14 C -0.178 4.178 15 C 0.054 3.946 16 N -0.330 5.330 17 C -0.359 4.359 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.215 1.215 23 H -0.207 1.207 24 H -0.217 1.217 25 C -0.005 4.005 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.147 0.853 30 H 0.240 0.760 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 11.026 11.787 11.028 19.547 hybrid contribution -0.627 0.187 -0.362 0.748 sum 10.399 11.973 10.666 19.112 Atomic orbital electron populations 1.20913 0.90249 1.04323 1.02385 1.20043 0.97027 0.91719 0.99552 1.21097 0.93144 0.97950 1.03367 1.18161 0.89593 0.84660 1.02468 1.84817 1.76451 1.36144 1.33143 1.19859 0.96504 0.91607 1.02969 1.20683 0.90731 1.03212 1.02043 1.19974 0.92993 0.95355 1.00700 1.20756 0.99601 0.94070 1.02652 1.18397 0.89174 0.85879 1.00939 1.86023 1.74243 1.32909 1.30793 1.23739 0.97998 0.93428 0.82498 0.91310 1.23059 1.00814 0.92458 1.01479 1.21185 0.91621 0.90255 0.91577 1.44355 1.47026 1.08391 1.33271 1.19040 1.15425 0.95137 1.06275 0.90371 1.24822 0.99649 0.95695 1.00040 1.69955 1.41393 1.01305 1.44109 0.86138 0.81746 0.77139 0.80762 1.21455 1.20712 1.21662 1.21964 0.92929 0.92241 0.93402 0.91113 0.91646 0.89506 0.85293 0.76023 0.91498 0.91211 0.91000 0.91045 0.91396 0.90452 0.91728 0.91258 0.93133 0.93582 0.93650 0.94202 0.95160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.85 36.01 0.35 -1.29 16 2 C -0.08 -1.19 5.89 -104.49 -0.62 -1.81 16 3 C -0.14 -1.75 9.66 -39.45 -0.38 -2.13 16 4 C 0.10 1.18 6.68 -39.24 -0.26 0.92 16 5 O -0.50 -5.11 12.54 -19.68 -0.25 -5.36 16 6 C -0.11 -1.36 5.89 -104.49 -0.62 -1.97 16 7 C -0.11 -1.06 8.96 36.01 0.32 -0.73 16 8 C -0.09 -1.24 5.89 -104.50 -0.62 -1.86 16 9 C -0.11 -1.38 8.78 36.00 0.32 -1.06 16 10 C 0.10 1.56 5.53 -39.24 -0.22 1.34 16 11 O -0.32 -5.53 8.10 -19.69 -0.16 -5.69 16 12 C 0.08 1.48 3.42 -24.58 -0.08 1.40 16 13 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 14 C -0.14 -2.67 6.68 -24.90 -0.17 -2.84 16 15 C 0.18 4.34 5.38 -3.06 -0.02 4.33 16 16 N -0.60 -15.62 3.39 -170.06 -0.58 -16.19 16 17 C -0.23 -6.49 10.27 -15.06 -0.15 -6.64 16 18 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 19 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 20 N -0.92 -26.98 10.35 55.49 0.57 -26.40 16 21 Si 0.91 22.12 29.56 -169.99 -5.02 17.10 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.12 2.59 5.26 -2.53 -0.01 2.58 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 28 H 0.09 1.34 4.11 -51.92 -0.21 1.13 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.38 2.08 9.06 45.56 0.41 2.49 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.64 6.72 -51.92 -0.35 0.29 16 33 H 0.07 0.68 7.53 -51.93 -0.39 0.29 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.66 6.72 -51.93 -0.35 0.31 16 36 H 0.08 0.99 7.53 -51.93 -0.39 0.60 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 39 H 0.05 1.35 7.39 -51.93 -0.38 0.97 16 40 H 0.05 1.22 7.52 -51.93 -0.39 0.83 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.04 0.84 7.90 -51.93 -0.41 0.43 16 43 H 0.03 0.66 7.29 -51.93 -0.38 0.28 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -31.70 341.59 -8.29 -39.98 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.76 Total: 1.43 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -2.24 Total: -10.02 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.00 Total: -42.60 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -0.41 Total: -11.05 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.70 -8.29 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229771251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.040 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds