Wall clock time and date at job start Tue Mar 31 2020 07:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38144 * 119.99808 * 2 1 4 4 C 1.38676 * 120.00117 * 179.97438 * 3 2 1 5 5 O 1.35981 * 120.00269 * 180.02562 * 4 3 2 6 6 C 1.38722 * 119.99643 * 359.97438 * 4 3 2 7 7 C 1.50699 * 119.99864 * 180.02562 * 6 4 3 8 8 C 1.38105 * 120.00143 * 359.73193 * 6 4 3 9 9 C 1.50697 * 120.00430 * 180.29742 * 8 6 4 10 10 C 1.38678 * 120.00023 * 179.97438 * 2 1 3 11 11 O 1.35985 * 119.99717 * 0.02562 * 10 2 1 12 12 C 1.42906 * 116.99689 * 96.44479 * 11 10 2 13 13 H 1.08999 * 110.88429 * 23.90522 * 12 11 10 14 14 C 1.55150 * 111.00575 * 147.83392 * 12 11 10 15 15 C 1.54329 * 103.02276 * 153.37826 * 14 12 11 16 16 N 1.47027 * 107.26732 * 338.14108 * 15 14 12 17 17 C 1.36932 * 125.65083 * 178.84698 * 16 15 14 18 18 H 1.07996 * 120.00077 * 185.37806 * 17 16 15 19 19 C 1.38811 * 120.00213 * 5.37708 * 17 16 15 20 20 N 1.31623 * 119.99868 * 353.77300 * 19 17 16 21 21 Si 1.86801 * 120.00221 * 173.77052 * 19 17 16 22 22 H 1.48496 * 109.47074 * 275.00784 * 21 19 17 23 23 H 1.48501 * 109.46788 * 35.01031 * 21 19 17 24 24 H 1.48498 * 109.46916 * 155.00725 * 21 19 17 25 25 C 1.47422 * 108.69931 * 358.58401 * 16 15 14 26 26 H 1.08997 * 109.47386 * 275.87326 * 1 2 3 27 27 H 1.09002 * 109.47448 * 35.87176 * 1 2 3 28 28 H 1.09007 * 109.47027 * 155.87058 * 1 2 3 29 29 H 1.08000 * 120.00603 * 359.97438 * 3 2 1 30 30 H 0.96699 * 114.00177 * 89.99935 * 5 4 3 31 31 H 1.08994 * 109.47402 * 89.99998 * 7 6 4 32 32 H 1.09007 * 109.47255 * 210.00614 * 7 6 4 33 33 H 1.09004 * 109.47153 * 330.00158 * 7 6 4 34 34 H 1.09007 * 109.46915 * 270.25210 * 9 8 6 35 35 H 1.09005 * 109.47131 * 30.24562 * 9 8 6 36 36 H 1.08991 * 109.47564 * 150.24949 * 9 8 6 37 37 H 1.09002 * 110.72032 * 271.93981 * 14 12 11 38 38 H 1.09007 * 110.72249 * 35.03242 * 14 12 11 39 39 H 1.09003 * 109.99609 * 218.66433 * 15 14 12 40 40 H 1.09005 * 109.77817 * 97.49728 * 15 14 12 41 41 H 0.96993 * 120.00167 * 179.97438 * 20 19 17 42 42 H 1.09003 * 110.36874 * 143.19565 * 25 16 15 43 43 H 1.09001 * 110.36947 * 265.41028 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1964 0.0000 4 6 3.5845 1.1965 0.0005 5 8 4.2643 2.3741 0.0011 6 6 4.2781 -0.0049 0.0016 7 6 5.7850 -0.0049 0.0028 8 6 3.5876 -1.2009 0.0077 9 6 4.3410 -2.5060 0.0157 10 6 2.2004 -1.2010 0.0005 11 8 1.5204 -2.3786 0.0005 12 6 1.3203 -3.0122 -1.2647 13 1 2.0771 -2.6949 -1.9821 14 6 1.3054 -4.5566 -1.1172 15 6 0.4389 -5.0115 -2.3105 16 7 -0.3905 -3.8650 -2.7098 17 6 -1.2837 -3.8491 -3.7476 18 1 -1.7832 -2.9300 -4.0160 19 6 -1.5471 -5.0143 -4.4546 20 7 -0.8509 -6.1042 -4.2098 21 14 -2.8895 -5.0355 -5.7533 22 1 -4.1997 -5.3005 -5.1066 23 1 -2.9339 -3.7200 -6.4409 24 1 -2.6020 -6.1028 -6.7449 25 6 -0.1058 -2.7374 -1.8038 26 1 -0.3634 0.1052 1.0222 27 1 -0.3634 0.8327 -0.6022 28 1 -0.3633 -0.9379 -0.4201 29 1 1.6578 2.1317 -0.0004 30 1 4.4607 2.7145 0.8846 31 1 6.1476 -0.0044 1.0306 32 1 6.1488 -0.8951 -0.5105 33 1 6.1488 0.8849 -0.5112 34 1 4.5274 -2.8242 -1.0101 35 1 5.2911 -2.3739 0.5334 36 1 3.7496 -3.2639 0.5293 37 1 2.3146 -4.9611 -1.1940 38 1 0.8448 -4.8494 -0.1736 39 1 -0.1984 -5.8441 -2.0124 40 1 1.0805 -5.3114 -3.1391 41 1 -1.0351 -6.9184 -4.7036 42 1 -0.1293 -1.7953 -2.3517 43 1 -0.8252 -2.7174 -0.9852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229771251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:21 Heat of formation + Delta-G solvation = -58.611154 kcal Electronic energy + Delta-G solvation = -23862.040874 eV Core-core repulsion = 20486.343343 eV Total energy + Delta-G solvation = -3375.697531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59091 -39.89502 -38.33347 -36.82282 -35.29493 -34.24680 -31.48337 -31.01190 -30.29121 -29.09329 -27.77537 -26.35606 -25.64373 -23.09334 -22.04872 -21.85522 -21.43691 -19.06783 -18.94516 -18.34086 -17.81297 -16.82099 -16.41528 -16.15345 -15.99399 -15.17232 -14.78322 -14.70440 -14.40833 -14.28873 -14.18400 -13.93568 -13.80620 -13.75937 -13.61064 -13.54122 -13.19276 -12.96075 -12.76888 -12.70768 -12.53499 -12.24606 -12.12413 -12.04280 -11.93977 -11.77292 -11.50939 -11.43982 -10.75551 -10.67634 -9.49542 -9.20917 -8.94820 -7.88755 -5.25010 0.06593 0.26031 1.45639 1.48427 1.56184 2.20604 2.48522 2.84694 3.26307 3.29959 3.65421 3.76369 3.79264 3.84166 3.99847 4.07959 4.08283 4.24627 4.39549 4.51807 4.59573 4.62710 4.72536 4.72701 4.76528 4.80878 4.82728 4.86170 4.89575 4.99766 5.01463 5.10380 5.18722 5.32426 5.36603 5.42302 5.46050 5.58975 5.60197 5.68771 5.74022 6.14829 6.59283 6.87862 7.05989 7.71385 8.36076 9.21990 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.003894 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.744188 B = 7188.487850 C = 7706.352298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.093 4.093 3 C -0.144 4.144 4 C 0.104 3.896 5 O -0.500 6.500 6 C -0.116 4.116 7 C -0.107 4.107 8 C -0.095 4.095 9 C -0.113 4.113 10 C 0.062 3.938 11 O -0.322 6.322 12 C 0.100 3.900 13 H 0.066 0.934 14 C -0.124 4.124 15 C 0.186 3.814 16 N -0.625 5.625 17 C -0.249 4.249 18 H 0.082 0.918 19 C -0.060 4.060 20 N -0.948 5.948 21 Si 0.980 3.020 22 H -0.284 1.284 23 H -0.270 1.270 24 H -0.292 1.292 25 C 0.122 3.878 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.147 0.853 30 H 0.409 0.591 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.017 0.983 40 H 0.016 0.984 41 H 0.249 0.751 42 H 0.040 0.960 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.442 13.991 12.411 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.094 4.094 3 C -0.162 4.162 4 C 0.059 3.941 5 O -0.313 6.313 6 C -0.117 4.117 7 C -0.164 4.164 8 C -0.096 4.096 9 C -0.170 4.170 10 C 0.019 3.981 11 O -0.239 6.239 12 C 0.043 3.957 13 H 0.084 0.916 14 C -0.162 4.162 15 C 0.061 3.939 16 N -0.352 5.352 17 C -0.378 4.378 18 H 0.099 0.901 19 C -0.254 4.254 20 N -0.596 5.596 21 Si 0.807 3.193 22 H -0.211 1.211 23 H -0.195 1.195 24 H -0.218 1.218 25 C -0.003 4.003 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.165 0.835 30 H 0.268 0.732 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.036 0.964 40 H 0.035 0.965 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 12.273 13.712 11.816 21.869 hybrid contribution -0.940 -0.235 -0.527 1.103 sum 11.332 13.477 11.289 20.916 Atomic orbital electron populations 1.20893 0.90103 1.03475 1.03247 1.20195 0.97394 0.92043 0.99729 1.21296 0.93659 0.98034 1.03224 1.18267 0.89592 0.85385 1.00830 1.84757 1.76015 1.35197 1.35290 1.20190 0.98099 0.91115 1.02260 1.20730 0.88585 1.03600 1.03437 1.20190 0.92505 0.96664 1.00213 1.20786 1.00408 0.93018 1.02756 1.18685 0.90097 0.85450 1.03873 1.86025 1.74724 1.33893 1.29230 1.23302 0.95893 0.93028 0.83453 0.91604 1.22871 1.01141 0.92971 0.99264 1.20935 0.91078 0.89391 0.92486 1.44654 1.46986 1.10092 1.33516 1.19424 1.15921 0.95459 1.06990 0.90062 1.25676 1.01835 0.95407 1.02460 1.70165 1.42682 1.01633 1.45141 0.85087 0.78749 0.77360 0.78079 1.21055 1.19453 1.21840 1.22056 0.94828 0.90815 0.92624 0.89838 0.90388 0.91893 0.83543 0.73210 0.89489 0.90729 0.90715 0.91184 0.88946 0.91416 0.89071 0.90459 0.96430 0.96532 0.94154 0.94214 0.95168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.85 71.24 0.70 -2.45 16 2 C -0.09 -2.57 5.89 -19.78 -0.12 -2.69 16 3 C -0.14 -3.38 9.66 22.35 0.22 -3.16 16 4 C 0.10 2.30 6.68 22.49 0.15 2.45 16 5 O -0.50 -8.64 12.54 -93.33 -1.17 -9.81 16 6 C -0.12 -2.60 5.89 -19.78 -0.12 -2.72 16 7 C -0.11 -1.71 8.96 71.24 0.64 -1.07 16 8 C -0.10 -2.48 5.89 -19.78 -0.12 -2.59 16 9 C -0.11 -2.52 8.78 71.24 0.63 -1.89 16 10 C 0.06 1.89 5.53 22.49 0.12 2.01 16 11 O -0.32 -10.88 8.10 -93.38 -0.76 -11.64 16 12 C 0.10 3.72 3.42 31.99 0.11 3.83 16 13 H 0.07 2.49 7.91 -2.39 -0.02 2.47 16 14 C -0.12 -4.75 6.68 31.78 0.21 -4.54 16 15 C 0.19 9.39 5.38 86.73 0.47 9.85 16 16 N -0.62 -33.25 3.39 -691.95 -2.35 -35.60 16 17 C -0.25 -14.31 10.27 84.03 0.86 -13.45 16 18 H 0.08 4.47 7.84 -2.91 -0.02 4.45 16 19 C -0.06 -3.47 5.48 84.86 0.47 -3.01 16 20 N -0.95 -57.29 10.35 21.65 0.22 -57.06 16 21 Si 0.98 46.07 29.56 68.60 2.03 48.10 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 25 C 0.12 5.32 5.26 86.86 0.46 5.78 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.08 1.78 8.12 -2.39 -0.02 1.76 16 28 H 0.06 1.95 4.11 -2.38 -0.01 1.94 16 29 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.41 2.91 9.06 -74.06 -0.67 2.24 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.13 6.72 -2.38 -0.02 1.11 16 33 H 0.07 1.17 7.53 -2.39 -0.02 1.15 16 34 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.09 1.55 6.72 -2.38 -0.02 1.53 16 36 H 0.07 1.63 7.53 -2.39 -0.02 1.61 16 37 H 0.09 2.99 8.14 -2.39 -0.02 2.98 16 38 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 39 H 0.02 0.98 7.39 -2.39 -0.02 0.97 16 40 H 0.02 0.91 7.52 -2.38 -0.02 0.90 16 41 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.04 1.71 7.90 -2.39 -0.02 1.69 16 43 H 0.03 1.33 7.29 -2.39 -0.02 1.31 16 Total: -1.00 -69.40 341.59 3.00 -66.39 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.35 Total: 13.26 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 4.68 Total: -13.65 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -2.12 Total: -92.66 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -1.93 Total: -21.45 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -69.40 3.00 -66.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229771251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.782 kcal (2) G-P(sol) polarization free energy of solvation -69.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds