Wall clock time and date at job start Tue Mar 31 2020 06:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38154 * 119.99919 * 2 1 4 4 C 1.38683 * 119.99526 * 180.25244 * 3 2 1 5 5 O 1.35987 * 119.99738 * 179.74640 * 4 3 2 6 6 C 1.38713 * 119.99851 * 359.76816 * 4 3 2 7 7 C 1.50708 * 119.99955 * 180.02562 * 6 4 3 8 8 C 1.38112 * 120.00451 * 359.97438 * 6 4 3 9 9 C 1.50699 * 119.99911 * 180.02562 * 8 6 4 10 10 C 1.38678 * 119.99860 * 179.74754 * 2 1 3 11 11 O 1.35986 * 119.99896 * 359.97438 * 10 2 1 12 12 C 1.42895 * 117.00326 * 269.72943 * 11 10 2 13 13 C 1.53514 * 114.17121 * 210.00164 * 12 11 10 14 14 N 1.47483 * 87.92777 * 220.32774 * 13 12 11 15 15 C 1.46903 * 110.99717 * 138.70421 * 14 13 12 16 16 C 1.50694 * 109.47066 * 169.99804 * 15 14 13 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47480 * 87.83900 * 27.00973 * 14 13 12 25 25 H 1.09002 * 109.46999 * 270.25929 * 1 2 3 26 26 H 1.09003 * 109.46910 * 30.25602 * 1 2 3 27 27 H 1.09001 * 109.47395 * 150.25081 * 1 2 3 28 28 H 1.07992 * 120.00320 * 0.02562 * 3 2 1 29 29 H 0.96697 * 113.99897 * 270.01787 * 5 4 3 30 30 H 1.09001 * 109.46943 * 269.98041 * 7 6 4 31 31 H 1.08996 * 109.47101 * 29.97508 * 7 6 4 32 32 H 1.08999 * 109.47657 * 149.97849 * 7 6 4 33 33 H 1.08999 * 109.46929 * 269.97229 * 9 8 6 34 34 H 1.08998 * 109.47842 * 29.97727 * 9 8 6 35 35 H 1.08999 * 109.46850 * 149.97779 * 9 8 6 36 36 H 1.09002 * 113.38161 * 343.08595 * 12 11 10 37 37 H 1.09000 * 113.47331 * 105.56452 * 13 12 11 38 38 H 1.08995 * 113.52785 * 335.10042 * 13 12 11 39 39 H 1.09007 * 109.47052 * 49.99488 * 15 14 13 40 40 H 1.09003 * 109.46808 * 290.00181 * 15 14 13 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.09004 * 113.47132 * 87.75237 * 24 14 13 43 43 H 1.09000 * 113.47538 * 218.21976 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1965 0.0000 4 6 3.5846 1.1964 -0.0053 5 8 4.2645 2.3740 -0.0105 6 6 4.2781 -0.0050 -0.0057 7 6 5.7851 -0.0051 -0.0109 8 6 3.5875 -1.2011 -0.0003 9 6 4.3410 -2.5061 -0.0002 10 6 2.2004 -1.2010 0.0053 11 8 1.5204 -2.3786 0.0110 12 6 1.2017 -2.9376 1.2869 13 6 1.1251 -4.4708 1.3001 14 7 -0.0506 -4.3511 2.1824 15 6 -1.0931 -5.3142 1.8038 16 6 -2.1650 -5.3364 2.8628 17 1 -2.0802 -4.6991 3.7305 18 6 -3.2537 -6.1711 2.7244 19 7 -3.3569 -6.9476 1.6679 20 14 -4.5821 -6.1991 4.0374 21 1 -4.2438 -7.2192 5.0622 22 1 -4.6716 -4.8630 4.6795 23 1 -5.8869 -6.5372 3.4142 24 6 -0.3035 -3.0318 1.5736 25 1 -0.3633 0.0047 1.0277 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3634 -0.8922 -0.5099 28 1 1.6579 2.1317 0.0004 29 1 4.4576 2.7128 -0.8954 30 1 6.1449 -0.0072 -1.0398 31 1 6.1503 0.8859 0.4998 32 1 6.1503 -0.8941 0.5034 33 1 4.5183 -2.8234 -1.0279 34 1 5.2956 -2.3747 0.5093 35 1 3.7540 -3.2645 0.5179 36 1 1.7857 -2.5128 2.1034 37 1 1.9817 -4.9442 1.7799 38 1 0.8950 -4.9033 0.3264 39 1 -0.6537 -6.3075 1.7107 40 1 -1.5307 -5.0197 0.8499 41 1 -4.1226 -7.5351 1.5708 42 1 -0.9150 -3.0796 0.6725 43 1 -0.6576 -2.2859 2.2851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229772045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:30 Heat of formation + Delta-G solvation = -26.807851 kcal Electronic energy + Delta-G solvation = -23296.078977 eV Core-core repulsion = 19921.760541 eV Total energy + Delta-G solvation = -3374.318436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70102 -39.46052 -37.78260 -35.84170 -34.41123 -32.86739 -30.53384 -29.41328 -29.21198 -26.99642 -25.52868 -25.08004 -24.77745 -22.26723 -21.39127 -20.54575 -19.52374 -18.11939 -17.38564 -17.01525 -16.34951 -15.69062 -15.37456 -14.69890 -14.45181 -14.20357 -14.03741 -13.69295 -13.46280 -13.35904 -13.02966 -12.86843 -12.75928 -12.53696 -12.33018 -12.26081 -12.00089 -11.82380 -11.71101 -11.35936 -11.29123 -11.06325 -10.93131 -10.59230 -10.52620 -10.23113 -9.80876 -9.35975 -9.24383 -8.63777 -8.45111 -8.32246 -7.95011 -6.04930 -4.06341 0.97615 1.14090 3.17712 3.31664 3.37300 3.41676 3.84595 4.04561 4.41983 4.60825 4.64129 4.81631 4.84848 4.90871 5.10057 5.21906 5.28097 5.30575 5.34522 5.38953 5.46554 5.56344 5.57807 5.67636 5.70896 5.80029 5.93007 5.96571 6.01926 6.10634 6.19905 6.21934 6.24956 6.31426 6.35260 6.49332 6.55226 6.58573 7.15989 7.42307 7.61670 7.72890 7.82582 8.06958 8.41915 9.00892 9.57735 11.06167 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030232 B = 0.003211 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.957058 B = 8718.775443 C = 9274.443321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.137 4.137 4 C 0.098 3.902 5 O -0.496 6.496 6 C -0.109 4.109 7 C -0.112 4.112 8 C -0.086 4.086 9 C -0.114 4.114 10 C 0.096 3.904 11 O -0.319 6.319 12 C 0.059 3.941 13 C -0.002 4.002 14 N -0.462 5.462 15 C 0.162 3.838 16 C -0.506 4.506 17 H 0.063 0.937 18 C 0.054 3.946 19 N -0.899 5.899 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.273 1.273 23 H -0.287 1.287 24 C -0.002 4.002 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.130 0.870 29 H 0.386 0.614 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.030 0.970 40 H 0.006 0.994 41 H 0.262 0.738 42 H 0.073 0.927 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.172 15.843 -6.684 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.156 4.156 4 C 0.054 3.946 5 O -0.306 6.306 6 C -0.109 4.109 7 C -0.169 4.169 8 C -0.086 4.086 9 C -0.170 4.170 10 C 0.052 3.948 11 O -0.235 6.235 12 C 0.003 3.997 13 C -0.131 4.131 14 N -0.187 5.187 15 C 0.036 3.964 16 C -0.544 4.544 17 H 0.082 0.918 18 C -0.147 4.147 19 N -0.539 5.539 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.198 1.198 23 H -0.213 1.213 24 C -0.131 4.131 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.148 0.852 29 H 0.241 0.759 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.024 0.976 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.990 15.429 -5.575 22.909 hybrid contribution -0.983 0.069 -0.621 1.165 sum 15.006 15.498 -6.197 22.445 Atomic orbital electron populations 1.20759 0.90114 1.03299 1.02924 1.20098 0.97030 0.91817 0.99575 1.21121 0.93159 0.97961 1.03340 1.18176 0.89594 0.84701 1.02164 1.84813 1.76454 1.36123 1.33199 1.19862 0.96568 0.91568 1.02949 1.20732 0.90668 1.03261 1.02205 1.19938 0.92864 0.95389 1.00455 1.20772 0.99623 0.93861 1.02738 1.18376 0.89222 0.85720 1.01501 1.86119 1.73673 1.34136 1.29533 1.24332 0.97028 0.94521 0.83824 1.24101 0.97672 0.93418 0.97923 1.69003 1.05612 1.03050 1.40990 1.20271 0.89215 0.91102 0.95828 1.21087 1.04161 1.22868 1.06296 0.91836 1.25010 0.98318 0.95469 0.95915 1.69959 1.30482 1.25410 1.28055 0.86464 0.80798 0.78442 0.81523 1.20595 1.19809 1.21275 1.24281 0.94593 0.95414 0.98843 0.90773 0.91611 0.90314 0.85232 0.75873 0.91396 0.91023 0.91004 0.90820 0.91252 0.90811 0.88743 0.90153 0.91033 0.95181 0.97634 0.92874 0.90868 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.79 36.01 0.35 -1.01 16 2 C -0.08 -1.09 5.89 -104.49 -0.62 -1.70 16 3 C -0.14 -1.57 9.64 -39.45 -0.38 -1.95 16 4 C 0.10 1.09 6.68 -39.24 -0.26 0.83 16 5 O -0.50 -4.58 12.55 -19.70 -0.25 -4.83 16 6 C -0.11 -1.21 5.89 -104.49 -0.62 -1.83 16 7 C -0.11 -0.95 9.38 36.01 0.34 -0.61 16 8 C -0.09 -1.06 5.89 -104.49 -0.62 -1.68 16 9 C -0.11 -1.21 9.38 36.01 0.34 -0.88 16 10 C 0.10 1.34 5.56 -39.24 -0.22 1.12 16 11 O -0.32 -4.94 8.36 -19.70 -0.16 -5.11 16 12 C 0.06 0.95 3.99 -26.20 -0.10 0.84 16 13 C 0.00 -0.03 7.52 -7.53 -0.06 -0.09 16 14 N -0.46 -10.11 6.32 -246.08 -1.55 -11.66 16 15 C 0.16 4.25 4.57 -4.98 -0.02 4.23 16 16 C -0.51 -14.48 9.39 -34.44 -0.32 -14.81 16 17 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 20 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.00 -0.04 7.55 -7.54 -0.06 -0.09 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 27 H 0.08 1.04 7.53 -51.93 -0.39 0.65 16 28 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.39 1.74 9.06 45.56 0.41 2.15 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.59 7.53 -51.93 -0.39 0.20 16 32 H 0.07 0.56 5.94 -51.93 -0.31 0.25 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.61 5.94 -51.93 -0.31 0.30 16 35 H 0.07 0.86 6.90 -51.93 -0.36 0.50 16 36 H 0.09 1.46 7.96 -51.93 -0.41 1.04 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 39 H 0.03 0.84 8.08 -51.92 -0.42 0.42 16 40 H 0.01 0.16 7.30 -51.93 -0.38 -0.22 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.07 1.45 7.42 -51.93 -0.39 1.06 16 43 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -32.07 352.50 -9.13 -41.20 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.85 Total: 0.58 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -2.34 Total: -16.18 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.82 Total: -37.81 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.41 Total: -9.94 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.07 -9.13 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229772045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.395 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds