Wall clock time and date at job start Tue Mar 31 2020 06:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38154 * 119.99919 * 2 1 4 4 C 1.38683 * 119.99526 * 180.25244 * 3 2 1 5 5 O 1.35987 * 119.99738 * 179.74640 * 4 3 2 6 6 C 1.38713 * 119.99851 * 359.76816 * 4 3 2 7 7 C 1.50708 * 119.99955 * 180.02562 * 6 4 3 8 8 C 1.38112 * 120.00451 * 359.97438 * 6 4 3 9 9 C 1.50699 * 119.99911 * 180.02562 * 8 6 4 10 10 C 1.38678 * 119.99860 * 179.74754 * 2 1 3 11 11 O 1.35986 * 119.99896 * 359.97438 * 10 2 1 12 12 C 1.42895 * 117.00326 * 269.72943 * 11 10 2 13 13 C 1.53514 * 114.17121 * 210.00164 * 12 11 10 14 14 N 1.47483 * 87.92777 * 220.32774 * 13 12 11 15 15 C 1.46903 * 110.99717 * 138.70421 * 14 13 12 16 16 C 1.50694 * 109.47066 * 169.99804 * 15 14 13 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47480 * 87.83900 * 27.00973 * 14 13 12 25 25 H 1.09002 * 109.46999 * 270.25929 * 1 2 3 26 26 H 1.09003 * 109.46910 * 30.25602 * 1 2 3 27 27 H 1.09001 * 109.47395 * 150.25081 * 1 2 3 28 28 H 1.07992 * 120.00320 * 0.02562 * 3 2 1 29 29 H 0.96697 * 113.99897 * 270.01787 * 5 4 3 30 30 H 1.09001 * 109.46943 * 269.98041 * 7 6 4 31 31 H 1.08996 * 109.47101 * 29.97508 * 7 6 4 32 32 H 1.08999 * 109.47657 * 149.97849 * 7 6 4 33 33 H 1.08999 * 109.46929 * 269.97229 * 9 8 6 34 34 H 1.08998 * 109.47842 * 29.97727 * 9 8 6 35 35 H 1.08999 * 109.46850 * 149.97779 * 9 8 6 36 36 H 1.09002 * 113.38161 * 343.08595 * 12 11 10 37 37 H 1.09000 * 113.47331 * 105.56452 * 13 12 11 38 38 H 1.08995 * 113.52785 * 335.10042 * 13 12 11 39 39 H 1.09007 * 109.47052 * 49.99488 * 15 14 13 40 40 H 1.09003 * 109.46808 * 290.00181 * 15 14 13 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.09004 * 113.47132 * 87.75237 * 24 14 13 43 43 H 1.09000 * 113.47538 * 218.21976 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1965 0.0000 4 6 3.5846 1.1964 -0.0053 5 8 4.2645 2.3740 -0.0105 6 6 4.2781 -0.0050 -0.0057 7 6 5.7851 -0.0051 -0.0109 8 6 3.5875 -1.2011 -0.0003 9 6 4.3410 -2.5061 -0.0002 10 6 2.2004 -1.2010 0.0053 11 8 1.5204 -2.3786 0.0110 12 6 1.2017 -2.9376 1.2869 13 6 1.1251 -4.4708 1.3001 14 7 -0.0506 -4.3511 2.1824 15 6 -1.0931 -5.3142 1.8038 16 6 -2.1650 -5.3364 2.8628 17 1 -2.0802 -4.6991 3.7305 18 6 -3.2537 -6.1711 2.7244 19 7 -3.3569 -6.9476 1.6679 20 14 -4.5821 -6.1991 4.0374 21 1 -4.2438 -7.2192 5.0622 22 1 -4.6716 -4.8630 4.6795 23 1 -5.8869 -6.5372 3.4142 24 6 -0.3035 -3.0318 1.5736 25 1 -0.3633 0.0047 1.0277 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3634 -0.8922 -0.5099 28 1 1.6579 2.1317 0.0004 29 1 4.4576 2.7128 -0.8954 30 1 6.1449 -0.0072 -1.0398 31 1 6.1503 0.8859 0.4998 32 1 6.1503 -0.8941 0.5034 33 1 4.5183 -2.8234 -1.0279 34 1 5.2956 -2.3747 0.5093 35 1 3.7540 -3.2645 0.5179 36 1 1.7857 -2.5128 2.1034 37 1 1.9817 -4.9442 1.7799 38 1 0.8950 -4.9033 0.3264 39 1 -0.6537 -6.3075 1.7107 40 1 -1.5307 -5.0197 0.8499 41 1 -4.1226 -7.5351 1.5708 42 1 -0.9150 -3.0796 0.6725 43 1 -0.6576 -2.2859 2.2851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229772045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:30 Heat of formation + Delta-G solvation = -49.416028 kcal Electronic energy + Delta-G solvation = -23297.059341 eV Core-core repulsion = 19921.760541 eV Total energy + Delta-G solvation = -3375.298800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.77480 -40.74632 -38.85111 -36.85097 -35.29346 -35.00790 -31.58984 -30.92473 -30.21568 -28.05635 -27.15077 -26.71325 -25.68424 -23.79706 -22.65525 -21.46322 -21.03913 -19.08636 -18.58575 -18.30614 -17.92256 -17.16933 -16.44686 -16.14786 -16.03956 -15.72699 -14.99153 -14.71776 -14.43723 -14.34186 -14.18424 -13.99836 -13.94159 -13.78031 -13.70024 -13.52294 -13.26126 -13.15241 -12.90673 -12.65870 -12.56819 -12.40240 -12.24122 -12.14656 -11.95557 -11.68604 -11.40909 -11.25452 -10.65893 -10.61276 -9.81568 -9.50437 -9.21291 -8.24880 -6.35641 0.04961 0.25759 1.39359 1.41169 1.52652 2.20326 2.38580 2.79572 3.07340 3.25976 3.31816 3.39619 3.75352 3.82001 3.93006 4.05307 4.10559 4.32501 4.45716 4.47788 4.54518 4.60262 4.62881 4.65315 4.70560 4.73787 4.78624 4.79367 4.87722 4.89872 4.91946 5.04072 5.11667 5.15151 5.31670 5.37323 5.45037 5.53200 5.58937 5.71278 5.73218 6.02544 6.36446 6.56183 6.78104 6.87006 7.33927 8.86541 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030232 B = 0.003211 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.957058 B = 8718.775443 C = 9274.443321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.143 4.143 4 C 0.105 3.895 5 O -0.500 6.500 6 C -0.115 4.115 7 C -0.109 4.109 8 C -0.091 4.091 9 C -0.113 4.113 10 C 0.062 3.938 11 O -0.325 6.325 12 C 0.089 3.911 13 C -0.002 4.002 14 N -0.478 5.478 15 C 0.178 3.822 16 C -0.528 4.528 17 H 0.060 0.940 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.972 3.028 21 H -0.271 1.271 22 H -0.265 1.265 23 H -0.280 1.280 24 C -0.004 4.004 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.147 0.853 29 H 0.409 0.591 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.004 0.996 40 H -0.020 1.020 41 H 0.266 0.734 42 H 0.058 0.942 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.466 17.627 -6.113 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.161 4.161 4 C 0.060 3.940 5 O -0.313 6.313 6 C -0.115 4.115 7 C -0.165 4.165 8 C -0.092 4.092 9 C -0.169 4.169 10 C 0.018 3.982 11 O -0.241 6.241 12 C 0.033 3.967 13 C -0.131 4.131 14 N -0.202 5.202 15 C 0.051 3.949 16 C -0.566 4.566 17 H 0.078 0.922 18 C -0.197 4.197 19 N -0.574 5.574 20 Si 0.796 3.204 21 H -0.197 1.197 22 H -0.189 1.189 23 H -0.205 1.205 24 C -0.133 4.133 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.164 0.836 29 H 0.268 0.732 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.022 0.978 40 H -0.002 1.002 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 17.312 17.238 -5.026 24.942 hybrid contribution -1.268 -0.358 -0.883 1.586 sum 16.043 16.881 -5.909 24.027 Atomic orbital electron populations 1.20735 0.90057 1.03331 1.02757 1.20216 0.97289 0.92112 0.99852 1.21311 0.93637 0.98034 1.03125 1.18279 0.89597 0.85387 1.00706 1.84755 1.76047 1.35252 1.35256 1.20167 0.98065 0.91070 1.02224 1.20775 0.88630 1.03753 1.03384 1.20135 0.92364 0.96618 1.00060 1.20809 1.00142 0.92748 1.03238 1.18644 0.90063 0.85251 1.04199 1.86112 1.74053 1.35215 1.28707 1.23903 0.94785 0.93134 0.84884 1.24128 0.96639 0.95396 0.96963 1.68890 1.05635 1.03412 1.42284 1.19919 0.89862 0.90926 0.94217 1.21404 1.05295 1.23185 1.06707 0.92183 1.25955 1.00719 0.94778 0.98228 1.70080 1.31400 1.25991 1.29927 0.85337 0.77590 0.78879 0.78548 1.19674 1.18909 1.20488 1.24271 0.96866 0.93982 0.98183 0.91044 0.89543 0.92284 0.83560 0.73201 0.89782 0.90712 0.90304 0.90199 0.89221 0.92150 0.87403 0.88111 0.92006 0.97790 1.00215 0.92520 0.92387 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 9.79 71.24 0.70 -1.96 16 2 C -0.09 -2.34 5.89 -19.78 -0.12 -2.46 16 3 C -0.14 -3.00 9.64 22.36 0.22 -2.78 16 4 C 0.10 2.07 6.68 22.49 0.15 2.22 16 5 O -0.50 -7.67 12.55 -93.40 -1.17 -8.84 16 6 C -0.11 -2.28 5.89 -19.78 -0.12 -2.40 16 7 C -0.11 -1.51 9.38 71.24 0.67 -0.84 16 8 C -0.09 -2.12 5.89 -19.78 -0.12 -2.24 16 9 C -0.11 -2.23 9.38 71.24 0.67 -1.57 16 10 C 0.06 1.69 5.56 22.49 0.13 1.82 16 11 O -0.32 -10.16 8.36 -93.39 -0.78 -10.94 16 12 C 0.09 2.88 3.99 30.94 0.12 3.00 16 13 C 0.00 -0.08 7.52 83.58 0.63 0.55 16 14 N -0.48 -21.49 6.32 -932.86 -5.89 -27.39 16 15 C 0.18 9.77 4.57 85.55 0.39 10.16 16 16 C -0.53 -30.96 9.39 25.60 0.24 -30.72 16 17 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 18 C 0.00 0.08 5.46 84.66 0.46 0.54 16 19 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 20 Si 0.97 44.99 29.54 68.60 2.03 47.01 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 C 0.00 -0.14 7.55 83.58 0.63 0.49 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.09 1.62 8.09 -2.39 -0.02 1.60 16 27 H 0.06 1.61 7.53 -2.39 -0.02 1.60 16 28 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 29 H 0.41 2.29 9.06 -74.06 -0.67 1.62 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.00 7.53 -2.39 -0.02 0.98 16 32 H 0.08 0.98 5.94 -2.39 -0.01 0.97 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 1.36 5.94 -2.39 -0.01 1.35 16 35 H 0.06 1.35 6.90 -2.39 -0.02 1.33 16 36 H 0.11 3.22 7.96 -2.39 -0.02 3.21 16 37 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.06 2.38 7.91 -2.39 -0.02 2.36 16 39 H 0.00 0.24 8.08 -2.38 -0.02 0.22 16 40 H -0.02 -1.17 7.30 -2.39 -0.02 -1.19 16 41 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 42 H 0.06 2.42 7.42 -2.39 -0.02 2.41 16 43 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -69.78 352.50 -0.54 -70.32 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.34 Total: 12.75 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 4.65 Total: -26.19 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -5.61 Total: -84.11 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -1.95 Total: -19.77 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -69.78 -0.54 -70.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229772045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.903 kcal (2) G-P(sol) polarization free energy of solvation -69.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds