Wall clock time and date at job start Tue Mar 31 2020 06:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35982 * 117.00424 * 2 1 4 4 C 1.38724 * 119.99688 * 359.72473 * 3 2 1 5 5 C 1.38109 * 119.99881 * 179.72026 * 4 3 2 6 6 C 1.50703 * 119.99975 * 180.26034 * 5 4 3 7 7 N 1.46902 * 109.46554 * 260.29624 * 6 5 4 8 8 C 1.47474 * 110.99955 * 265.96951 * 7 6 5 9 9 C 1.53514 * 87.93270 * 221.30067 * 8 7 6 10 10 C 1.50703 * 114.34534 * 139.68562 * 9 8 7 11 11 H 1.07997 * 120.00009 * 266.07622 * 10 9 8 12 12 C 1.37876 * 119.99830 * 86.07516 * 10 9 8 13 13 N 1.31515 * 120.00306 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99814 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47049 * 59.99999 * 14 12 10 16 16 H 1.48495 * 109.47124 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47349 * 300.00167 * 14 12 10 18 18 C 1.47482 * 110.99649 * 170.00003 * 7 6 5 19 19 C 1.38719 * 120.00010 * 0.55266 * 5 4 3 20 20 O 1.35981 * 120.00285 * 179.69855 * 19 5 4 21 21 C 1.42898 * 116.99967 * 180.02562 * 20 19 5 22 22 C 1.38680 * 119.99831 * 359.72852 * 19 5 4 23 23 C 1.38153 * 120.00124 * 359.97438 * 22 19 5 24 24 C 1.50700 * 120.00135 * 179.97438 * 23 22 19 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99850 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99971 * 1 2 3 28 28 H 1.08001 * 119.99973 * 359.97438 * 4 3 2 29 29 H 1.09000 * 109.47242 * 20.29783 * 6 5 4 30 30 H 1.08996 * 109.46690 * 140.29939 * 6 5 4 31 31 H 1.09004 * 113.47915 * 336.06430 * 8 7 6 32 32 H 1.08998 * 113.47469 * 106.53797 * 8 7 6 33 33 H 1.09002 * 114.17090 * 272.38053 * 9 8 7 34 34 H 0.96992 * 119.99958 * 179.97438 * 13 12 10 35 35 H 1.09000 * 113.47805 * 253.47280 * 18 7 6 36 36 H 1.09002 * 113.47971 * 23.87547 * 18 7 6 37 37 H 1.09005 * 109.46856 * 60.00740 * 21 20 19 38 38 H 1.09001 * 109.46699 * 180.02562 * 21 20 19 39 39 H 1.08991 * 109.47220 * 300.00110 * 21 20 19 40 40 H 1.07995 * 119.99952 * 180.02562 * 22 19 5 41 41 H 1.09003 * 109.46887 * 270.02420 * 24 23 22 42 42 H 1.08996 * 109.47360 * 30.01760 * 24 23 22 43 43 H 1.08998 * 109.47181 * 150.02613 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.2910 2.3750 -0.0058 5 6 1.9180 3.6055 0.0001 6 6 1.0972 4.8695 -0.0003 7 7 1.0323 5.4106 -1.3644 8 6 2.0889 6.4155 -1.5852 9 6 1.0512 7.2599 -2.3382 10 6 1.1325 8.7385 -2.0585 11 1 0.5151 9.1772 -1.2886 12 6 1.9949 9.5312 -2.7857 13 7 2.7471 8.9970 -3.7229 14 14 2.0961 11.3639 -2.4386 15 1 2.5132 11.5785 -1.0296 16 1 3.0899 11.9861 -3.3498 17 1 0.7652 11.9841 -2.6608 18 6 0.0494 6.5067 -1.4519 19 6 3.3033 3.6781 0.0001 20 8 3.9207 4.8897 -0.0003 21 6 5.3496 4.8896 -0.0008 22 6 4.0585 2.5150 0.0000 23 6 3.4313 1.2841 0.0004 24 6 4.2520 0.0202 -0.0004 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 0.2124 2.3185 -0.0107 29 1 0.0894 4.6484 0.3513 30 1 1.5596 5.6030 0.6600 31 1 2.4436 6.8818 -0.6660 32 1 2.9012 6.0594 -2.2188 33 1 0.9714 7.0264 -3.3999 34 1 3.3535 9.5547 -4.2347 35 1 -0.8668 6.2278 -1.9724 36 1 -0.1410 6.9966 -0.4970 37 1 5.7126 4.3757 -0.8909 38 1 5.7130 5.9173 -0.0007 39 1 5.7132 4.3759 0.8890 40 1 5.1370 2.5715 0.0004 41 1 4.4495 -0.2842 -1.0282 42 1 5.1965 0.2000 0.5130 43 1 3.7037 -0.7694 0.5134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232832348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:04 Heat of formation + Delta-G solvation = -15.286300 kcal Electronic energy + Delta-G solvation = -23650.051178 eV Core-core repulsion = 20276.232353 eV Total energy + Delta-G solvation = -3373.818824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.51486 -38.99267 -38.46449 -36.33641 -33.65096 -32.40939 -29.62595 -29.39041 -27.75604 -27.41401 -26.34570 -24.66990 -24.47727 -22.27123 -21.78748 -20.71969 -18.50760 -17.43707 -17.30099 -16.79426 -16.40644 -15.83023 -15.40640 -14.74004 -14.62121 -14.59865 -14.24830 -13.90124 -13.59354 -13.46368 -13.26961 -12.89785 -12.43447 -12.23068 -12.14160 -11.83646 -11.74076 -11.49055 -11.43910 -11.41769 -11.17166 -10.93350 -10.67318 -10.43816 -10.18611 -10.15230 -9.62460 -9.23987 -8.84799 -8.58659 -8.36171 -7.87370 -7.43522 -5.99672 -4.03619 1.37827 1.65045 3.32607 3.32853 3.37485 3.39878 3.60203 3.82583 4.44354 4.77245 4.83151 5.00705 5.11956 5.12112 5.14556 5.26954 5.29352 5.35697 5.37319 5.40818 5.53872 5.64505 5.69829 5.70792 5.72301 5.81424 5.89812 6.19346 6.21826 6.29850 6.38915 6.47189 6.60553 6.66042 6.77952 6.78860 6.88325 7.32377 7.33977 7.39155 7.70543 7.79023 7.98386 8.19530 8.44977 8.98746 9.60392 11.09909 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023355 B = 0.003978 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.614698 B = 7037.303445 C = 7859.723358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.083 3.917 4 C -0.152 4.152 5 C -0.057 4.057 6 C 0.065 3.935 7 N -0.480 5.480 8 C 0.025 3.975 9 C 0.037 3.963 10 C -0.514 4.514 11 H 0.056 0.944 12 C 0.067 3.933 13 N -0.886 5.886 14 Si 0.890 3.110 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.006 4.006 19 C 0.111 3.889 20 O -0.300 6.300 21 C 0.029 3.971 22 C -0.176 4.176 23 C -0.087 4.087 24 C -0.101 4.101 25 H 0.095 0.905 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.131 0.869 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.261 0.739 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.099 0.901 39 H 0.048 0.952 40 H 0.131 0.869 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 -16.210 9.148 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.039 3.961 4 C -0.172 4.172 5 C -0.059 4.059 6 C -0.063 4.063 7 N -0.202 5.202 8 C -0.104 4.104 9 C 0.018 3.982 10 C -0.553 4.553 11 H 0.074 0.926 12 C -0.135 4.135 13 N -0.524 5.524 14 Si 0.717 3.283 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.135 4.135 19 C 0.065 3.935 20 O -0.213 6.213 21 C -0.066 4.066 22 C -0.195 4.195 23 C -0.088 4.088 24 C -0.158 4.158 25 H 0.113 0.887 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.149 0.851 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.149 0.851 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.614 -16.768 8.605 18.916 hybrid contribution 0.227 1.636 0.778 1.826 sum 1.841 -15.131 9.383 17.899 Atomic orbital electron populations 1.22997 0.78899 1.03400 1.01421 1.86011 1.20856 1.26791 1.89630 1.18582 0.91552 0.84054 1.01917 1.20882 0.99775 0.90751 1.05761 1.18958 0.90512 0.95120 1.01269 1.21442 0.97594 0.93443 0.93846 1.68926 1.07513 1.23134 1.20662 1.23951 0.95592 0.91084 0.99792 1.20139 0.89588 0.93331 0.95158 1.20997 1.22914 0.92262 1.19100 0.92581 1.24997 0.95494 0.98319 0.94704 1.69966 1.24666 1.35641 1.22102 0.86707 0.77838 0.85591 0.78131 1.20277 1.21290 1.20211 1.24005 0.96985 0.92232 1.00243 1.18743 0.91736 0.84442 0.98598 1.86259 1.20607 1.25881 1.88517 1.23005 0.79120 1.03972 1.00526 1.20875 0.99700 0.90951 1.07944 1.18888 0.90533 0.95298 1.04111 1.20571 0.98506 0.94564 1.02148 0.88655 0.92616 0.92937 0.85092 0.91543 0.92772 0.92546 0.92307 0.92042 0.92924 0.92192 0.92933 0.92895 0.88241 0.93360 0.85113 0.91471 0.92020 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.08 9.54 -19.68 -0.19 -4.27 16 3 C 0.08 1.20 6.66 -39.24 -0.26 0.94 16 4 C -0.15 -2.30 8.66 -39.45 -0.34 -2.64 16 5 C -0.06 -0.98 5.48 -104.49 -0.57 -1.55 16 6 C 0.07 1.19 4.70 -4.97 -0.02 1.17 16 7 N -0.48 -10.25 6.32 -246.10 -1.55 -11.81 16 8 C 0.02 0.59 5.72 -7.55 -0.04 0.54 16 9 C 0.04 0.95 3.76 -91.24 -0.34 0.61 16 10 C -0.51 -14.25 8.83 -34.44 -0.30 -14.55 16 11 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 12 C 0.07 1.88 5.46 -17.82 -0.10 1.79 16 13 N -0.89 -25.88 13.26 55.43 0.74 -25.14 16 14 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C -0.01 -0.13 7.24 -7.55 -0.05 -0.19 16 19 C 0.11 1.85 6.65 -39.24 -0.26 1.59 16 20 O -0.30 -5.18 7.85 -19.68 -0.15 -5.33 16 21 C 0.03 0.37 9.81 101.05 0.99 1.36 16 22 C -0.18 -2.52 8.69 -39.45 -0.34 -2.86 16 23 C -0.09 -1.21 5.89 -104.49 -0.62 -1.83 16 24 C -0.10 -1.10 9.79 36.01 0.35 -0.74 16 25 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 27 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 28 H 0.13 1.73 6.27 -52.49 -0.33 1.40 16 29 H 0.07 1.08 7.94 -51.93 -0.41 0.67 16 30 H 0.05 1.04 7.01 -51.93 -0.36 0.67 16 31 H 0.06 1.39 7.09 -51.93 -0.37 1.02 16 32 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 37 H 0.05 0.63 7.66 -51.93 -0.40 0.24 16 38 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 40 H 0.13 1.55 6.29 -52.49 -0.33 1.22 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 43 H 0.07 0.73 7.53 -51.93 -0.39 0.34 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -31.11 348.63 -8.55 -39.66 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.69 Total: 0.52 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -0.92 Total: -15.10 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.82 Total: -36.95 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.34 Total: -9.60 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.11 -8.55 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232832348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.372 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds