Wall clock time and date at job start Tue Mar 31 2020 06:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35982 * 117.00424 * 2 1 4 4 C 1.38724 * 119.99688 * 359.72473 * 3 2 1 5 5 C 1.38109 * 119.99881 * 179.72026 * 4 3 2 6 6 C 1.50703 * 119.99975 * 180.26034 * 5 4 3 7 7 N 1.46902 * 109.46554 * 260.29624 * 6 5 4 8 8 C 1.47474 * 110.99955 * 265.96951 * 7 6 5 9 9 C 1.53514 * 87.93270 * 221.30067 * 8 7 6 10 10 C 1.50703 * 114.34534 * 139.68562 * 9 8 7 11 11 H 1.07997 * 120.00009 * 266.07622 * 10 9 8 12 12 C 1.37876 * 119.99830 * 86.07516 * 10 9 8 13 13 N 1.31515 * 120.00306 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99814 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47049 * 59.99999 * 14 12 10 16 16 H 1.48495 * 109.47124 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47349 * 300.00167 * 14 12 10 18 18 C 1.47482 * 110.99649 * 170.00003 * 7 6 5 19 19 C 1.38719 * 120.00010 * 0.55266 * 5 4 3 20 20 O 1.35981 * 120.00285 * 179.69855 * 19 5 4 21 21 C 1.42898 * 116.99967 * 180.02562 * 20 19 5 22 22 C 1.38680 * 119.99831 * 359.72852 * 19 5 4 23 23 C 1.38153 * 120.00124 * 359.97438 * 22 19 5 24 24 C 1.50700 * 120.00135 * 179.97438 * 23 22 19 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99850 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99971 * 1 2 3 28 28 H 1.08001 * 119.99973 * 359.97438 * 4 3 2 29 29 H 1.09000 * 109.47242 * 20.29783 * 6 5 4 30 30 H 1.08996 * 109.46690 * 140.29939 * 6 5 4 31 31 H 1.09004 * 113.47915 * 336.06430 * 8 7 6 32 32 H 1.08998 * 113.47469 * 106.53797 * 8 7 6 33 33 H 1.09002 * 114.17090 * 272.38053 * 9 8 7 34 34 H 0.96992 * 119.99958 * 179.97438 * 13 12 10 35 35 H 1.09000 * 113.47805 * 253.47280 * 18 7 6 36 36 H 1.09002 * 113.47971 * 23.87547 * 18 7 6 37 37 H 1.09005 * 109.46856 * 60.00740 * 21 20 19 38 38 H 1.09001 * 109.46699 * 180.02562 * 21 20 19 39 39 H 1.08991 * 109.47220 * 300.00110 * 21 20 19 40 40 H 1.07995 * 119.99952 * 180.02562 * 22 19 5 41 41 H 1.09003 * 109.46887 * 270.02420 * 24 23 22 42 42 H 1.08996 * 109.47360 * 30.01760 * 24 23 22 43 43 H 1.08998 * 109.47181 * 150.02613 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.2910 2.3750 -0.0058 5 6 1.9180 3.6055 0.0001 6 6 1.0972 4.8695 -0.0003 7 7 1.0323 5.4106 -1.3644 8 6 2.0889 6.4155 -1.5852 9 6 1.0512 7.2599 -2.3382 10 6 1.1325 8.7385 -2.0585 11 1 0.5151 9.1772 -1.2886 12 6 1.9949 9.5312 -2.7857 13 7 2.7471 8.9970 -3.7229 14 14 2.0961 11.3639 -2.4386 15 1 2.5132 11.5785 -1.0296 16 1 3.0899 11.9861 -3.3498 17 1 0.7652 11.9841 -2.6608 18 6 0.0494 6.5067 -1.4519 19 6 3.3033 3.6781 0.0001 20 8 3.9207 4.8897 -0.0003 21 6 5.3496 4.8896 -0.0008 22 6 4.0585 2.5150 0.0000 23 6 3.4313 1.2841 0.0004 24 6 4.2520 0.0202 -0.0004 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 0.2124 2.3185 -0.0107 29 1 0.0894 4.6484 0.3513 30 1 1.5596 5.6030 0.6600 31 1 2.4436 6.8818 -0.6660 32 1 2.9012 6.0594 -2.2188 33 1 0.9714 7.0264 -3.3999 34 1 3.3535 9.5547 -4.2347 35 1 -0.8668 6.2278 -1.9724 36 1 -0.1410 6.9966 -0.4970 37 1 5.7126 4.3757 -0.8909 38 1 5.7130 5.9173 -0.0007 39 1 5.7132 4.3759 0.8890 40 1 5.1370 2.5715 0.0004 41 1 4.4495 -0.2842 -1.0282 42 1 5.1965 0.2000 0.5130 43 1 3.7037 -0.7694 0.5134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232832348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:04 Heat of formation + Delta-G solvation = -35.783320 kcal Electronic energy + Delta-G solvation = -23650.939995 eV Core-core repulsion = 20276.232353 eV Total energy + Delta-G solvation = -3374.707642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.67586 -40.47566 -39.78737 -37.42011 -35.10191 -34.23981 -31.13092 -30.46041 -28.81659 -28.50542 -27.75047 -26.50435 -26.02698 -23.80842 -22.87643 -21.94388 -20.44015 -18.83972 -18.41846 -18.20109 -17.84671 -16.98090 -16.61860 -16.43115 -16.12751 -15.74532 -15.65658 -15.53647 -15.06640 -14.40504 -14.30213 -14.03661 -13.89797 -13.65776 -13.39314 -13.17557 -13.04600 -12.98379 -12.80877 -12.60689 -12.43166 -12.39846 -12.35596 -12.01100 -11.77358 -11.42025 -11.34087 -11.04729 -10.83845 -10.46862 -9.79399 -9.61681 -8.57291 -8.12844 -6.24445 0.23918 0.50905 1.43102 1.44950 1.52736 2.39023 2.43593 2.54061 2.67120 3.15967 3.48038 3.70998 3.77562 3.97471 4.10500 4.23387 4.30683 4.32252 4.39576 4.43360 4.44728 4.48481 4.58915 4.62701 4.71401 4.72804 4.77150 4.78608 4.84665 4.89016 4.90261 4.97252 5.02760 5.25101 5.30361 5.34998 5.44238 5.59468 5.63684 5.71846 5.86653 6.31510 6.38105 6.41699 6.60334 6.84064 7.43451 8.96898 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023355 B = 0.003978 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.614698 B = 7037.303445 C = 7859.723358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.325 6.325 3 C 0.078 3.922 4 C -0.154 4.154 5 C -0.087 4.087 6 C 0.071 3.929 7 N -0.480 5.480 8 C 0.048 3.952 9 C 0.017 3.983 10 C -0.531 4.531 11 H 0.059 0.941 12 C 0.016 3.984 13 N -0.922 5.922 14 Si 0.958 3.042 15 H -0.269 1.269 16 H -0.284 1.284 17 H -0.268 1.268 18 C 0.009 3.991 19 C 0.090 3.910 20 O -0.332 6.332 21 C 0.022 3.978 22 C -0.175 4.175 23 C -0.091 4.091 24 C -0.098 4.098 25 H 0.123 0.877 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.146 0.854 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.032 0.968 33 H 0.027 0.973 34 H 0.262 0.738 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.154 0.846 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.348 -17.301 10.405 20.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.239 6.239 3 C 0.033 3.967 4 C -0.173 4.173 5 C -0.088 4.088 6 C -0.057 4.057 7 N -0.202 5.202 8 C -0.081 4.081 9 C -0.002 4.002 10 C -0.569 4.569 11 H 0.078 0.922 12 C -0.184 4.184 13 N -0.561 5.561 14 Si 0.783 3.217 15 H -0.194 1.194 16 H -0.210 1.210 17 H -0.193 1.193 18 C -0.119 4.119 19 C 0.044 3.956 20 O -0.245 6.245 21 C -0.072 4.072 22 C -0.194 4.194 23 C -0.092 4.092 24 C -0.155 4.155 25 H 0.141 0.859 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.164 0.836 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.092 0.908 40 H 0.171 0.829 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.419 -17.875 9.874 20.470 hybrid contribution 0.268 1.839 0.389 1.899 sum 1.686 -16.036 10.263 19.113 Atomic orbital electron populations 1.23285 0.77073 1.05411 1.01771 1.86012 1.22743 1.25826 1.89345 1.18750 0.92046 0.84449 1.01419 1.21027 1.00662 0.90331 1.05287 1.18991 0.90897 0.95127 1.03831 1.21385 0.99088 0.93780 0.91451 1.68849 1.05893 1.22076 1.23372 1.23531 0.94876 0.91327 0.98402 1.20100 0.92651 0.93482 0.93996 1.21333 1.22967 0.93383 1.19226 0.92245 1.25830 0.95028 1.03087 0.94424 1.70104 1.25431 1.37373 1.23162 0.85616 0.78105 0.79781 0.78188 1.19448 1.20969 1.19300 1.23837 0.96779 0.91605 0.99703 1.19005 0.92049 0.85021 0.99484 1.86198 1.22708 1.26793 1.88848 1.23212 0.77357 1.04648 1.02023 1.21123 1.00786 0.90338 1.07153 1.19342 0.90945 0.96331 1.02600 1.20625 0.98930 0.93052 1.02886 0.85922 0.92771 0.92037 0.83616 0.89367 0.94007 0.93494 0.94946 0.95519 0.92898 0.90615 0.92008 0.92345 0.88115 0.90776 0.82885 0.90805 0.90083 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.32 -7.62 9.54 -93.34 -0.89 -8.51 16 3 C 0.08 2.13 6.66 22.49 0.15 2.28 16 4 C -0.15 -4.47 8.66 22.36 0.19 -4.27 16 5 C -0.09 -2.96 5.48 -19.78 -0.11 -3.07 16 6 C 0.07 2.58 4.70 85.56 0.40 2.98 16 7 N -0.48 -20.68 6.32 -932.54 -5.89 -26.57 16 8 C 0.05 2.38 5.72 83.57 0.48 2.86 16 9 C 0.02 0.90 3.76 -11.20 -0.04 0.85 16 10 C -0.53 -29.86 8.83 25.60 0.23 -29.64 16 11 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 12 C 0.02 0.88 5.46 84.65 0.46 1.34 16 13 N -0.92 -55.23 13.26 21.45 0.28 -54.94 16 14 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 C 0.01 0.41 7.24 83.57 0.61 1.01 16 19 C 0.09 3.01 6.65 22.49 0.15 3.16 16 20 O -0.33 -11.66 7.85 -93.34 -0.73 -12.39 16 21 C 0.02 0.56 9.81 113.37 1.11 1.67 16 22 C -0.18 -4.80 8.69 22.36 0.19 -4.61 16 23 C -0.09 -2.37 5.89 -19.78 -0.12 -2.48 16 24 C -0.10 -1.87 9.79 71.24 0.70 -1.17 16 25 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 0.90 7.65 -2.39 -0.02 0.88 16 27 H 0.06 0.89 7.67 -2.38 -0.02 0.87 16 28 H 0.15 3.61 6.27 -2.91 -0.02 3.59 16 29 H 0.09 2.76 7.94 -2.39 -0.02 2.74 16 30 H 0.04 1.62 7.01 -2.39 -0.02 1.60 16 31 H 0.05 2.39 7.09 -2.38 -0.02 2.38 16 32 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.03 1.59 8.11 -2.39 -0.02 1.57 16 34 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.06 2.57 7.87 -2.39 -0.02 2.55 16 37 H 0.06 1.38 7.66 -2.38 -0.02 1.36 16 38 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.07 1.45 7.66 -2.39 -0.02 1.43 16 40 H 0.15 3.33 6.29 -2.91 -0.02 3.31 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 43 H 0.07 1.35 7.53 -2.39 -0.02 1.33 16 Total: -1.00 -68.05 348.63 1.31 -66.74 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.99 Total: 17.53 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 5.52 Total: -27.67 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -5.61 Total: -81.51 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.62 Total: -20.90 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -68.05 1.31 -66.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232832348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.958 kcal (2) G-P(sol) polarization free energy of solvation -68.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds