Wall clock time and date at job start Tue Mar 31 2020 07:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.58363 * 2 1 4 4 C 1.50722 * 109.52690 * 120.17028 * 2 1 3 5 5 O 1.44225 * 112.85208 * 211.42228 * 4 2 1 6 6 C 1.43936 * 116.11653 * 318.69255 * 5 4 2 7 7 C 1.50740 * 111.88104 * 319.24564 * 6 5 4 8 8 N 1.47594 * 108.45726 * 93.37240 * 7 6 5 9 9 C 1.46905 * 111.00148 * 152.98781 * 8 7 6 10 10 C 1.50694 * 109.47066 * 204.42208 * 9 8 7 11 11 C 1.37637 * 120.12947 * 254.35686 * 10 9 8 12 12 C 1.38615 * 120.24966 * 180.27575 * 11 10 9 13 13 C 1.38661 * 120.49957 * 359.76806 * 12 11 10 14 14 C 1.37591 * 120.25161 * 359.95203 * 13 12 11 15 15 C 1.40704 * 120.12772 * 74.10063 * 10 9 8 16 16 C 1.41397 * 120.24421 * 359.97438 * 15 10 9 17 17 H 1.07993 * 119.99775 * 31.75010 * 16 15 10 18 18 C 1.39944 * 119.99547 * 211.75946 * 16 15 10 19 19 N 1.30829 * 119.99552 * 199.12625 * 18 16 15 20 20 Si 1.86798 * 120.00316 * 19.11871 * 18 16 15 21 21 H 1.48492 * 109.47536 * 272.91263 * 20 18 16 22 22 H 1.48500 * 109.47117 * 32.91510 * 20 18 16 23 23 H 1.48503 * 109.47102 * 152.90976 * 20 18 16 24 24 C 1.40458 * 114.42805 * 279.56392 * 8 7 6 25 25 H 1.08994 * 109.46844 * 180.16916 * 1 2 3 26 26 H 1.08994 * 109.47286 * 300.17232 * 1 2 3 27 27 H 1.08999 * 109.46936 * 60.17247 * 1 2 3 28 28 H 0.96708 * 113.99795 * 59.82786 * 3 2 1 29 29 H 1.08996 * 108.80713 * 332.29487 * 4 2 1 30 30 H 1.09003 * 108.80460 * 90.55489 * 4 2 1 31 31 H 1.09000 * 108.99897 * 79.85750 * 6 5 4 32 32 H 1.08996 * 109.00149 * 198.70247 * 6 5 4 33 33 H 1.08996 * 109.63689 * 333.67762 * 7 6 5 34 34 H 1.09001 * 109.63757 * 213.06335 * 7 6 5 35 35 H 1.08996 * 109.47247 * 84.41795 * 9 8 7 36 36 H 1.09001 * 109.46589 * 324.42189 * 9 8 7 37 37 H 1.07996 * 119.87731 * 0.02562 * 11 10 9 38 38 H 1.08001 * 119.74738 * 179.73919 * 12 11 10 39 39 H 1.07996 * 119.87167 * 179.97438 * 13 12 11 40 40 H 1.07997 * 120.13307 * 180.02562 * 14 13 12 41 41 H 0.96998 * 119.99708 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.08697 * 181.75519 * 24 8 7 43 43 H 1.09004 * 109.08619 * 300.74048 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0090 1.3464 0.0000 4 6 2.0338 -0.7139 1.2281 5 8 3.2899 -0.1897 1.7050 6 6 4.2651 0.1337 0.6969 7 6 4.3044 -0.9005 -0.3990 8 7 3.4061 -0.4640 -1.4858 9 6 3.8403 -1.0095 -2.7788 10 6 3.3345 -0.1278 -3.8913 11 6 2.2819 -0.5409 -4.6760 12 6 1.8183 0.2656 -5.7036 13 6 2.4046 1.4977 -5.9503 14 6 3.4544 1.9336 -5.1750 15 6 3.9331 1.1233 -4.1285 16 6 5.0112 1.5608 -3.3251 17 1 5.7024 0.8418 -2.9109 18 6 5.1823 2.9255 -3.0665 19 7 6.3423 3.3738 -2.6600 20 14 3.7548 4.1070 -3.3020 21 1 3.7221 4.5691 -4.7128 22 1 2.4812 3.4154 -2.9780 23 1 3.9260 5.2758 -2.4021 24 6 2.0462 -0.7313 -1.2580 25 1 -0.3633 -1.0276 0.0030 26 1 -0.3633 0.5165 0.8884 27 1 -0.3633 0.5111 -0.8915 28 1 1.7225 1.8658 0.7638 29 1 1.2903 -0.6191 2.0195 30 1 2.1607 -1.7707 0.9930 31 1 4.0182 1.1022 0.2621 32 1 5.2492 0.1941 1.1616 33 1 3.9675 -1.8608 -0.0087 34 1 5.3217 -0.9928 -0.7794 35 1 3.4395 -2.0156 -2.9018 36 1 4.9293 -1.0459 -2.8105 37 1 1.8180 -1.4988 -4.4929 38 1 0.9946 -0.0684 -6.3170 39 1 2.0356 2.1178 -6.7539 40 1 3.9094 2.8937 -5.3686 41 1 6.4610 4.3197 -2.4812 42 1 1.4688 -0.4038 -2.1226 43 1 1.9110 -1.8049 -1.1266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235513204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:10 Heat of formation + Delta-G solvation = -55.306756 kcal Electronic energy + Delta-G solvation = -25262.619961 eV Core-core repulsion = 21887.065719 eV Total energy + Delta-G solvation = -3375.554242 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.99912 -37.94863 -35.94026 -35.73387 -33.43925 -32.11423 -30.93767 -30.19959 -28.59705 -26.49295 -26.34012 -24.97320 -23.27022 -21.24525 -20.60034 -20.15064 -19.44203 -17.22909 -17.02259 -16.16968 -15.76553 -15.60284 -15.32010 -14.66327 -14.33903 -14.09571 -13.87927 -13.62192 -13.28344 -13.01169 -12.60950 -12.52828 -12.50477 -12.06105 -11.88401 -11.65729 -11.48892 -11.32295 -11.27925 -11.02050 -10.74647 -10.61609 -10.52151 -10.31131 -10.03199 -10.02014 -9.61702 -9.35396 -8.93945 -8.79001 -7.59783 -7.45041 -7.40783 -6.79071 -4.27200 2.65161 2.77252 3.26256 3.34181 3.51441 4.03102 4.16525 4.34967 4.51296 4.71250 4.78815 4.96598 5.14746 5.43393 5.47735 5.54891 5.61471 5.64943 5.71884 5.78771 5.82792 5.93993 5.99278 6.08099 6.12605 6.15038 6.26507 6.30173 6.36338 6.42658 6.66124 6.81823 6.83320 7.06136 7.30796 7.40567 7.51555 7.69943 7.73730 7.86313 7.93575 8.02872 8.14883 8.28147 8.51727 8.82308 8.98332 10.23125 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014448 B = 0.007784 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.508072 B = 3596.188300 C = 4271.233438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.100 3.900 3 O -0.518 6.518 4 C 0.038 3.962 5 O -0.393 6.393 6 C 0.056 3.944 7 C 0.038 3.962 8 N -0.520 5.520 9 C 0.132 3.868 10 C -0.176 4.176 11 C -0.078 4.078 12 C -0.251 4.251 13 C -0.078 4.078 14 C -0.244 4.244 15 C 0.114 3.886 16 C -0.416 4.416 17 H 0.088 0.912 18 C 0.091 3.909 19 N -0.813 5.813 20 Si 0.912 3.088 21 H -0.275 1.275 22 H -0.245 1.245 23 H -0.296 1.296 24 C 0.094 3.906 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.363 0.637 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.031 0.969 34 H 0.084 0.916 35 H 0.017 0.983 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.281 0.719 42 H 0.085 0.915 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.853 -6.136 6.248 11.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.058 3.942 3 O -0.321 6.321 4 C -0.040 4.040 5 O -0.313 6.313 6 C -0.020 4.020 7 C -0.089 4.089 8 N -0.243 5.243 9 C 0.006 3.994 10 C -0.178 4.178 11 C -0.097 4.097 12 C -0.271 4.271 13 C -0.097 4.097 14 C -0.263 4.263 15 C 0.110 3.890 16 C -0.444 4.444 17 H 0.106 0.894 18 C -0.127 4.127 19 N -0.438 5.438 20 Si 0.739 3.261 21 H -0.201 1.201 22 H -0.168 1.168 23 H -0.224 1.224 24 C -0.036 4.036 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.209 0.791 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.103 0.897 35 H 0.036 0.964 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -7.274 -5.677 5.987 10.999 hybrid contribution -1.051 -0.106 0.190 1.073 sum -8.325 -5.783 6.178 11.871 Atomic orbital electron populations 1.22424 0.95291 1.02440 1.02946 1.21749 0.92684 0.84628 0.95180 1.86910 1.75388 1.21429 1.48376 1.22985 0.86820 0.97267 0.96895 1.88170 1.23876 1.85225 1.34057 1.22673 0.90403 1.00692 0.88260 1.22342 0.98020 0.95824 0.92760 1.58683 1.00981 1.62906 1.01743 1.20636 0.99583 0.92666 0.86511 1.19457 1.00091 0.98976 0.99285 1.20466 0.96191 0.97299 0.95755 1.20279 1.05312 0.97605 1.03883 1.20587 0.95863 0.95457 0.97749 1.21203 1.02936 1.02062 1.00132 1.17467 0.90380 0.90755 0.90379 1.19240 1.07526 0.92329 1.25306 0.89409 1.26014 0.95926 0.99041 0.91687 1.69708 1.23253 1.16651 1.34205 0.86374 0.83865 0.78536 0.77290 1.20138 1.16821 1.22393 1.21028 0.90963 0.94654 0.97003 0.91843 0.92201 0.91091 0.79146 0.90026 0.93377 0.88202 0.90327 0.95087 0.89732 0.96449 0.90844 0.89543 0.89378 0.89321 0.88064 0.90839 0.89678 0.96501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 8.55 37.16 0.32 -1.71 16 2 C 0.10 1.46 0.98 -91.03 -0.09 1.37 16 3 O -0.52 -8.86 9.65 -54.60 -0.53 -9.38 16 4 C 0.04 0.51 5.65 36.02 0.20 0.71 16 5 O -0.39 -6.32 10.66 -54.60 -0.58 -6.90 16 6 C 0.06 0.95 6.23 36.03 0.22 1.17 16 7 C 0.04 0.63 5.35 -4.58 -0.02 0.61 16 8 N -0.52 -9.74 3.50 -241.06 -0.84 -10.59 16 9 C 0.13 2.57 4.52 -4.98 -0.02 2.55 16 10 C -0.18 -3.94 4.80 -103.91 -0.50 -4.44 16 11 C -0.08 -1.63 9.01 -39.66 -0.36 -1.99 16 12 C -0.25 -5.31 10.05 -39.29 -0.39 -5.71 16 13 C -0.08 -1.74 10.02 -39.66 -0.40 -2.14 16 14 C -0.24 -6.01 7.35 -38.87 -0.29 -6.30 16 15 C 0.11 2.85 5.03 -106.82 -0.54 2.31 16 16 C -0.42 -10.94 8.76 -37.74 -0.33 -11.27 16 17 H 0.09 2.41 6.93 -52.49 -0.36 2.04 16 18 C 0.09 2.41 5.38 -17.34 -0.09 2.31 16 19 N -0.81 -21.73 13.93 55.55 0.77 -20.96 16 20 Si 0.91 21.92 24.86 -169.99 -4.23 17.70 16 21 H -0.27 -6.47 6.33 56.52 0.36 -6.11 16 22 H -0.25 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 24 C 0.09 1.57 3.97 -6.43 -0.03 1.54 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.36 4.86 9.04 45.56 0.41 5.27 16 29 H 0.08 0.93 7.70 -51.93 -0.40 0.53 16 30 H 0.05 0.64 6.61 -51.93 -0.34 0.29 16 31 H 0.10 2.00 5.88 -51.93 -0.31 1.70 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.03 0.48 6.85 -51.93 -0.36 0.13 16 34 H 0.08 1.42 7.43 -51.93 -0.39 1.03 16 35 H 0.02 0.31 7.77 -51.93 -0.40 -0.10 16 36 H 0.07 1.48 6.38 -51.93 -0.33 1.15 16 37 H 0.09 1.58 7.99 -52.49 -0.42 1.16 16 38 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.10 2.53 4.87 -52.49 -0.26 2.27 16 41 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 42 H 0.08 1.59 6.69 -51.93 -0.35 1.24 16 43 H 0.02 0.26 7.62 -51.93 -0.40 -0.13 16 LS Contribution 327.51 15.07 4.94 4.94 Total: -1.00 -28.77 327.51 -8.39 -37.16 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.61 Total: 9.02 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -2.31 Total: -20.98 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: -0.07 Total: -31.54 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -1.11 Total: -16.29 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.23 Total: 17.70 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.77 -8.39 -37.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235513204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.148 kcal (2) G-P(sol) polarization free energy of solvation -28.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds