Wall clock time and date at job start Tue Mar 31 2020 07:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.58363 * 2 1 4 4 C 1.50722 * 109.52690 * 120.17028 * 2 1 3 5 5 O 1.44225 * 112.85208 * 211.42228 * 4 2 1 6 6 C 1.43936 * 116.11653 * 318.69255 * 5 4 2 7 7 C 1.50740 * 111.88104 * 319.24564 * 6 5 4 8 8 N 1.47594 * 108.45726 * 93.37240 * 7 6 5 9 9 C 1.46905 * 111.00148 * 152.98781 * 8 7 6 10 10 C 1.50694 * 109.47066 * 204.42208 * 9 8 7 11 11 C 1.37637 * 120.12947 * 254.35686 * 10 9 8 12 12 C 1.38615 * 120.24966 * 180.27575 * 11 10 9 13 13 C 1.38661 * 120.49957 * 359.76806 * 12 11 10 14 14 C 1.37591 * 120.25161 * 359.95203 * 13 12 11 15 15 C 1.40704 * 120.12772 * 74.10063 * 10 9 8 16 16 C 1.41397 * 120.24421 * 359.97438 * 15 10 9 17 17 H 1.07993 * 119.99775 * 31.75010 * 16 15 10 18 18 C 1.39944 * 119.99547 * 211.75946 * 16 15 10 19 19 N 1.30829 * 119.99552 * 199.12625 * 18 16 15 20 20 Si 1.86798 * 120.00316 * 19.11871 * 18 16 15 21 21 H 1.48492 * 109.47536 * 272.91263 * 20 18 16 22 22 H 1.48500 * 109.47117 * 32.91510 * 20 18 16 23 23 H 1.48503 * 109.47102 * 152.90976 * 20 18 16 24 24 C 1.40458 * 114.42805 * 279.56392 * 8 7 6 25 25 H 1.08994 * 109.46844 * 180.16916 * 1 2 3 26 26 H 1.08994 * 109.47286 * 300.17232 * 1 2 3 27 27 H 1.08999 * 109.46936 * 60.17247 * 1 2 3 28 28 H 0.96708 * 113.99795 * 59.82786 * 3 2 1 29 29 H 1.08996 * 108.80713 * 332.29487 * 4 2 1 30 30 H 1.09003 * 108.80460 * 90.55489 * 4 2 1 31 31 H 1.09000 * 108.99897 * 79.85750 * 6 5 4 32 32 H 1.08996 * 109.00149 * 198.70247 * 6 5 4 33 33 H 1.08996 * 109.63689 * 333.67762 * 7 6 5 34 34 H 1.09001 * 109.63757 * 213.06335 * 7 6 5 35 35 H 1.08996 * 109.47247 * 84.41795 * 9 8 7 36 36 H 1.09001 * 109.46589 * 324.42189 * 9 8 7 37 37 H 1.07996 * 119.87731 * 0.02562 * 11 10 9 38 38 H 1.08001 * 119.74738 * 179.73919 * 12 11 10 39 39 H 1.07996 * 119.87167 * 179.97438 * 13 12 11 40 40 H 1.07997 * 120.13307 * 180.02562 * 14 13 12 41 41 H 0.96998 * 119.99708 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.08697 * 181.75519 * 24 8 7 43 43 H 1.09004 * 109.08619 * 300.74048 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0090 1.3464 0.0000 4 6 2.0338 -0.7139 1.2281 5 8 3.2899 -0.1897 1.7050 6 6 4.2651 0.1337 0.6969 7 6 4.3044 -0.9005 -0.3990 8 7 3.4061 -0.4640 -1.4858 9 6 3.8403 -1.0095 -2.7788 10 6 3.3345 -0.1278 -3.8913 11 6 2.2819 -0.5409 -4.6760 12 6 1.8183 0.2656 -5.7036 13 6 2.4046 1.4977 -5.9503 14 6 3.4544 1.9336 -5.1750 15 6 3.9331 1.1233 -4.1285 16 6 5.0112 1.5608 -3.3251 17 1 5.7024 0.8418 -2.9109 18 6 5.1823 2.9255 -3.0665 19 7 6.3423 3.3738 -2.6600 20 14 3.7548 4.1070 -3.3020 21 1 3.7221 4.5691 -4.7128 22 1 2.4812 3.4154 -2.9780 23 1 3.9260 5.2758 -2.4021 24 6 2.0462 -0.7313 -1.2580 25 1 -0.3633 -1.0276 0.0030 26 1 -0.3633 0.5165 0.8884 27 1 -0.3633 0.5111 -0.8915 28 1 1.7225 1.8658 0.7638 29 1 1.2903 -0.6191 2.0195 30 1 2.1607 -1.7707 0.9930 31 1 4.0182 1.1022 0.2621 32 1 5.2492 0.1941 1.1616 33 1 3.9675 -1.8608 -0.0087 34 1 5.3217 -0.9928 -0.7794 35 1 3.4395 -2.0156 -2.9018 36 1 4.9293 -1.0459 -2.8105 37 1 1.8180 -1.4988 -4.4929 38 1 0.9946 -0.0684 -6.3170 39 1 2.0356 2.1178 -6.7539 40 1 3.9094 2.8937 -5.3686 41 1 6.4610 4.3197 -2.4812 42 1 1.4688 -0.4038 -2.1226 43 1 1.9110 -1.8049 -1.1266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235513204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:09 Heat of formation + Delta-G solvation = -74.731539 kcal Electronic energy + Delta-G solvation = -25263.462283 eV Core-core repulsion = 21887.065719 eV Total energy + Delta-G solvation = -3376.396563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.27909 -39.64383 -37.29644 -37.03650 -35.35733 -33.31131 -32.57883 -32.03022 -29.94618 -27.91330 -27.47705 -26.73292 -24.76143 -23.06869 -21.97121 -21.38563 -21.10076 -19.13308 -18.28415 -17.54114 -17.28611 -17.05068 -16.61580 -16.29558 -15.82295 -15.58598 -15.51621 -15.19980 -14.67712 -14.41364 -14.29563 -13.86777 -13.71646 -13.60378 -13.42198 -13.17541 -12.93854 -12.75258 -12.55757 -12.51315 -12.46552 -12.34087 -12.01460 -11.99727 -11.48526 -11.41681 -11.22944 -11.09553 -10.84376 -10.02530 -9.35242 -9.26051 -8.82469 -8.75359 -6.24991 0.85691 0.93745 1.30127 1.42466 1.55146 2.21255 2.75525 2.85294 3.04846 3.35937 3.70218 3.74035 3.85218 3.99234 4.18828 4.22909 4.31488 4.38221 4.46343 4.52326 4.52793 4.59471 4.67352 4.68698 4.71781 4.82762 4.91137 4.99653 5.01899 5.04530 5.06785 5.24244 5.25821 5.42027 5.45337 5.73324 5.93511 6.01454 6.12050 6.16808 6.36253 6.44735 6.57686 6.67237 6.93219 7.02378 7.03909 8.32134 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014448 B = 0.007784 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.508072 B = 3596.188300 C = 4271.233438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 O -0.550 6.550 4 C 0.036 3.964 5 O -0.400 6.400 6 C 0.065 3.935 7 C 0.044 3.956 8 N -0.541 5.541 9 C 0.135 3.865 10 C -0.175 4.175 11 C -0.082 4.082 12 C -0.234 4.234 13 C -0.090 4.090 14 C -0.265 4.265 15 C 0.091 3.909 16 C -0.433 4.433 17 H 0.062 0.938 18 C 0.060 3.940 19 N -0.853 5.853 20 Si 0.958 3.042 21 H -0.269 1.269 22 H -0.267 1.267 23 H -0.289 1.289 24 C 0.089 3.911 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.375 0.625 29 H 0.111 0.889 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.057 0.943 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.286 0.714 42 H 0.063 0.937 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.706 -7.948 6.268 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.056 3.944 3 O -0.356 6.356 4 C -0.040 4.040 5 O -0.320 6.320 6 C -0.011 4.011 7 C -0.083 4.083 8 N -0.264 5.264 9 C 0.009 3.991 10 C -0.177 4.177 11 C -0.101 4.101 12 C -0.253 4.253 13 C -0.108 4.108 14 C -0.285 4.285 15 C 0.088 3.912 16 C -0.463 4.463 17 H 0.080 0.920 18 C -0.154 4.154 19 N -0.481 5.481 20 Si 0.785 3.215 21 H -0.195 1.195 22 H -0.191 1.191 23 H -0.216 1.216 24 C -0.040 4.040 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.222 0.778 29 H 0.129 0.871 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.142 -7.488 6.008 13.965 hybrid contribution -0.343 0.270 0.083 0.444 sum -10.485 -7.218 6.091 14.112 Atomic orbital electron populations 1.22346 0.92796 1.03909 1.03174 1.21864 0.94477 0.83469 0.94592 1.86881 1.76271 1.22931 1.49468 1.23152 0.86220 0.97300 0.97375 1.88157 1.24718 1.85371 1.33787 1.22433 0.91028 0.99183 0.88504 1.22278 0.97385 0.96529 0.92098 1.58550 1.02294 1.63874 1.01681 1.20552 0.98705 0.93282 0.86545 1.19868 0.99868 0.98088 0.99897 1.20863 0.95468 0.98715 0.95040 1.20802 1.04905 0.96488 1.03117 1.20936 0.95260 0.96532 0.98083 1.21303 1.04232 1.01948 1.00970 1.17685 0.90670 0.92294 0.90525 1.19109 1.08397 0.92050 1.26780 0.92031 1.26439 0.97114 0.99936 0.91874 1.69736 1.24190 1.17117 1.37011 0.85668 0.80944 0.77383 0.77481 1.19481 1.19103 1.21572 1.21120 0.89423 0.96149 0.97353 0.89707 0.90146 0.92715 0.77751 0.87137 0.92454 0.91501 0.89877 0.93100 0.90577 0.93951 0.92473 0.86084 0.85813 0.86660 0.89264 0.90433 0.91830 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 8.55 71.98 0.62 -2.74 16 2 C 0.10 2.65 0.98 -11.06 -0.01 2.64 16 3 O -0.55 -18.69 9.65 -130.46 -1.26 -19.95 16 4 C 0.04 0.87 5.65 71.24 0.40 1.28 16 5 O -0.40 -12.27 10.66 -130.46 -1.39 -13.66 16 6 C 0.06 2.22 6.23 71.25 0.44 2.67 16 7 C 0.04 1.46 5.35 85.44 0.46 1.92 16 8 N -0.54 -20.01 3.50 -916.59 -3.21 -23.22 16 9 C 0.14 5.21 4.52 85.55 0.39 5.59 16 10 C -0.18 -7.70 4.80 -19.41 -0.09 -7.79 16 11 C -0.08 -3.18 9.01 22.22 0.20 -2.98 16 12 C -0.23 -8.99 10.05 22.46 0.23 -8.77 16 13 C -0.09 -3.81 10.02 22.22 0.22 -3.58 16 14 C -0.27 -13.04 7.35 22.73 0.17 -12.87 16 15 C 0.09 4.63 5.03 -21.29 -0.11 4.53 16 16 C -0.43 -23.91 8.76 23.46 0.21 -23.71 16 17 H 0.06 3.61 6.93 -2.91 -0.02 3.59 16 18 C 0.06 3.29 5.38 85.26 0.46 3.75 16 19 N -0.85 -47.83 13.93 21.83 0.30 -47.53 16 20 Si 0.96 46.74 24.86 68.60 1.71 48.44 16 21 H -0.27 -12.61 6.33 99.48 0.63 -11.98 16 22 H -0.27 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 24 C 0.09 2.82 3.97 87.94 0.35 3.17 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.38 9.93 9.04 -74.05 -0.67 9.26 16 29 H 0.11 2.06 7.70 -2.39 -0.02 2.04 16 30 H 0.06 1.30 6.61 -2.39 -0.02 1.28 16 31 H 0.07 2.78 5.88 -2.39 -0.01 2.77 16 32 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.05 1.48 6.85 -2.39 -0.02 1.46 16 34 H 0.08 2.62 7.43 -2.39 -0.02 2.60 16 35 H 0.04 1.40 7.77 -2.39 -0.02 1.38 16 36 H 0.06 2.36 6.38 -2.39 -0.02 2.35 16 37 H 0.12 3.86 7.99 -2.91 -0.02 3.83 16 38 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16 39 H 0.12 4.21 8.06 -2.91 -0.02 4.18 16 40 H 0.09 4.53 4.87 -2.91 -0.01 4.51 16 41 H 0.29 14.76 8.30 -92.71 -0.77 14.00 16 42 H 0.06 2.26 6.69 -2.39 -0.02 2.25 16 43 H 0.04 1.05 7.62 -2.39 -0.02 1.03 16 Total: -1.00 -63.87 327.51 0.35 -63.53 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.27 Total: 29.28 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 3.92 Total: -36.89 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -2.91 Total: -70.75 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -2.65 Total: -33.61 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.71 Total: 48.44 kcal Total: -63.87 0.35 -63.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235513204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.203 kcal (2) G-P(sol) polarization free energy of solvation -63.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds