Wall clock time and date at job start Tue Mar 31 2020 06:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38145 * 119.96268 * 2 1 4 4 C 1.38842 * 119.93037 * 180.02562 * 3 2 1 5 5 N 1.39948 * 120.06885 * 179.97438 * 4 3 2 6 6 C 1.34779 * 120.00237 * 213.27583 * 5 4 3 7 7 O 1.21513 * 119.99668 * 5.31505 * 6 5 4 8 8 O 1.34646 * 120.00372 * 185.31650 * 6 5 4 9 9 C 1.45192 * 117.00299 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46782 * 60.00026 * 9 8 6 11 11 C 1.52994 * 109.47355 * 179.97438 * 9 8 6 12 12 C 1.53002 * 109.47125 * 300.00224 * 9 8 6 13 13 C 1.38879 * 119.86093 * 359.97438 * 4 3 2 14 14 C 1.38097 * 119.93232 * 0.02562 * 13 4 3 15 15 C 1.38256 * 119.97144 * 180.25488 * 2 1 3 16 16 C 1.50698 * 119.92817 * 0.02562 * 15 2 1 17 17 C 1.50709 * 109.46911 * 85.23686 * 16 15 2 18 18 H 1.07989 * 120.00030 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99589 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00596 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99488 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46999 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47185 * 119.99758 * 21 19 17 24 24 H 1.48496 * 109.46743 * 239.99218 * 21 19 17 25 25 H 1.09005 * 109.47077 * 90.00529 * 1 2 3 26 26 H 1.08996 * 109.46717 * 209.99783 * 1 2 3 27 27 H 1.08995 * 109.47341 * 329.99892 * 1 2 3 28 28 H 1.08001 * 120.02948 * 359.97277 * 3 2 1 29 29 H 0.97006 * 120.00218 * 33.27320 * 5 4 3 30 30 H 1.09000 * 109.47642 * 60.00116 * 10 9 8 31 31 H 1.09005 * 109.46711 * 179.97438 * 10 9 8 32 32 H 1.08999 * 109.47014 * 299.99454 * 10 9 8 33 33 H 1.09003 * 109.47383 * 60.00303 * 11 9 8 34 34 H 1.09005 * 109.47431 * 179.97438 * 11 9 8 35 35 H 1.09008 * 109.47533 * 299.99768 * 11 9 8 36 36 H 1.08994 * 109.47121 * 60.00122 * 12 9 8 37 37 H 1.09005 * 109.47119 * 180.02562 * 12 9 8 38 38 H 1.09003 * 109.47019 * 299.99333 * 12 9 8 39 39 H 1.07998 * 120.03705 * 180.02562 * 13 4 3 40 40 H 1.08002 * 119.96861 * 179.97438 * 14 13 4 41 41 H 1.08995 * 109.47389 * 205.23498 * 16 15 2 42 42 H 1.08995 * 109.47277 * 325.23944 * 16 15 2 43 43 H 0.96996 * 119.99864 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1968 0.0000 4 6 3.5854 1.1960 -0.0005 5 7 4.2872 2.4068 -0.0011 6 6 5.4692 2.5003 -0.6420 7 8 5.8794 1.5644 -1.2996 8 8 6.1955 3.6306 -0.5536 9 6 7.4584 3.6604 -1.2692 10 6 7.2030 3.4516 -2.7632 11 6 8.1356 5.0151 -1.0525 12 6 8.3672 2.5459 -0.7465 13 6 4.2761 -0.0088 -0.0005 14 6 3.5807 -1.2018 -0.0005 15 6 2.1977 -1.1977 -0.0053 16 6 1.4419 -2.5014 -0.0117 17 6 1.0885 -2.8702 -1.4296 18 1 1.3814 -2.2249 -2.2444 19 6 0.3902 -4.0310 -1.6863 20 7 0.0329 -4.8167 -0.6939 21 14 -0.0486 -4.4877 -3.4437 22 1 0.4636 -3.4450 -4.3687 23 1 0.5659 -5.7963 -3.7832 24 1 -1.5244 -4.5848 -3.5761 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6568 2.1321 -0.0004 29 1 3.9230 3.1788 0.4598 30 1 6.5556 4.2455 -3.1357 31 1 8.1512 3.4744 -3.3005 32 1 6.7205 2.4866 -2.9179 33 1 8.3176 5.1643 0.0118 34 1 9.0840 5.0373 -1.5894 35 1 7.4881 5.8088 -1.4253 36 1 7.8845 1.5810 -0.9013 37 1 9.3155 2.5686 -1.2835 38 1 8.5491 2.6947 0.3179 39 1 5.3561 -0.0127 -0.0005 40 1 4.1173 -2.1391 -0.0010 41 1 2.0637 -3.2840 0.4230 42 1 0.5291 -2.3951 0.5743 43 1 -0.4580 -5.6335 -0.8747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250058565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:03 Heat of formation + Delta-G solvation = -69.981023 kcal Electronic energy + Delta-G solvation = -23137.306411 eV Core-core repulsion = 19761.115846 eV Total energy + Delta-G solvation = -3376.190566 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.02515 -39.17369 -37.28384 -35.05369 -34.17051 -32.94113 -31.78962 -30.46188 -27.63714 -27.55532 -27.20390 -25.96222 -23.76192 -22.37969 -21.56069 -20.26451 -19.57182 -18.28304 -16.92231 -16.38560 -16.26370 -16.01916 -15.02524 -14.94825 -14.61435 -14.36092 -14.10365 -13.73476 -13.24365 -13.02089 -12.74869 -12.54587 -12.47200 -12.16758 -12.10403 -12.07440 -11.98369 -11.67850 -11.53679 -11.45583 -11.35131 -11.03418 -10.68758 -10.54756 -10.51052 -10.27328 -10.12904 -9.75717 -9.45844 -9.22613 -8.39260 -8.11749 -7.35330 -6.01829 -4.04965 1.83146 2.02566 2.15183 2.91060 3.30981 3.38956 3.44713 4.06555 4.37722 4.50264 4.53450 4.55502 4.69076 5.23259 5.30343 5.31987 5.33130 5.43674 5.47001 5.51767 5.54942 5.66531 5.75276 5.82599 5.83805 6.04672 6.10175 6.12516 6.18803 6.28161 6.34630 6.40492 6.53560 6.75801 6.88383 6.91845 7.18366 7.24436 7.46685 7.53977 7.73526 7.88291 7.94838 8.34965 8.37187 9.00582 9.58705 11.07712 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.003320 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.153420 B = 8431.223408 C = 8892.915552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.071 4.071 3 C -0.142 4.142 4 C 0.122 3.878 5 N -0.647 5.647 6 C 0.647 3.353 7 O -0.548 6.548 8 O -0.366 6.366 9 C 0.137 3.863 10 C -0.185 4.185 11 C -0.140 4.140 12 C -0.185 4.185 13 C -0.122 4.122 14 C -0.105 4.105 15 C -0.043 4.043 16 C 0.047 3.953 17 C -0.505 4.505 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.116 0.884 29 H 0.410 0.590 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.026 0.974 42 H 0.035 0.965 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.273 18.793 2.040 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.071 4.071 3 C -0.162 4.162 4 C 0.031 3.969 5 N -0.298 5.298 6 C 0.401 3.599 7 O -0.435 6.435 8 O -0.281 6.281 9 C 0.100 3.900 10 C -0.242 4.242 11 C -0.197 4.197 12 C -0.242 4.242 13 C -0.142 4.142 14 C -0.124 4.124 15 C -0.044 4.044 16 C 0.011 3.989 17 C -0.544 4.544 18 H 0.075 0.925 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.134 0.866 29 H 0.246 0.754 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.045 0.955 42 H 0.053 0.947 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.515 18.248 1.725 22.194 hybrid contribution -0.292 0.083 -0.877 0.929 sum 12.223 18.331 0.848 22.049 Atomic orbital electron populations 1.20741 0.91082 1.01925 1.02540 1.19558 0.96165 0.91644 0.99750 1.20555 0.91317 0.98113 1.06246 1.17239 0.90286 0.83503 1.05884 1.41971 1.19049 1.13839 1.54961 1.18053 0.81307 0.81520 0.79036 1.90941 1.70726 1.38907 1.42948 1.86278 1.33933 1.38060 1.69857 1.22071 0.79551 0.96910 0.91484 1.22533 1.03033 1.04785 0.93881 1.21859 1.00248 0.94489 1.03110 1.22530 0.99774 1.00582 1.01302 1.20968 0.99958 0.90988 1.02313 1.20971 0.94063 0.97055 1.00273 1.20593 0.93477 0.96936 0.93374 1.18392 0.94976 0.87782 0.97764 1.21070 1.35137 1.06251 0.91905 0.92484 1.24990 0.95899 0.96331 0.97069 1.69961 1.39391 1.13266 1.30797 0.86525 0.78054 0.78445 0.84997 1.19673 1.20988 1.20996 0.91147 0.90218 0.93297 0.86631 0.75446 0.92195 0.91135 0.89126 0.91500 0.90137 0.91501 0.89174 0.91119 0.92169 0.85787 0.86024 0.95530 0.94716 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 9.59 36.01 0.35 -1.54 16 2 C -0.07 -1.36 5.88 -104.65 -0.62 -1.97 16 3 C -0.14 -2.36 9.62 -39.39 -0.38 -2.74 16 4 C 0.12 2.05 6.28 -83.69 -0.53 1.53 16 5 N -0.65 -8.92 5.35 -14.27 -0.08 -8.99 16 6 C 0.65 9.49 7.79 54.06 0.42 9.91 16 7 O -0.55 -9.39 9.57 -19.28 -0.18 -9.57 16 8 O -0.37 -4.54 9.94 -40.34 -0.40 -4.94 16 9 C 0.14 1.41 1.13 -90.62 -0.10 1.31 16 10 C -0.19 -1.95 8.37 37.16 0.31 -1.64 16 11 C -0.14 -1.01 8.85 37.15 0.33 -0.68 16 12 C -0.18 -1.90 8.37 37.16 0.31 -1.58 16 13 C -0.12 -2.26 8.65 -39.40 -0.34 -2.60 16 14 C -0.10 -2.13 9.67 -39.61 -0.38 -2.52 16 15 C -0.04 -0.94 5.07 -104.59 -0.53 -1.47 16 16 C 0.05 1.20 4.61 -29.03 -0.13 1.07 16 17 C -0.51 -14.01 9.09 -34.44 -0.31 -14.32 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.08 1.54 6.02 -51.93 -0.31 1.23 16 27 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 28 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.41 4.30 8.93 -40.82 -0.36 3.93 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.23 5.88 -51.93 -0.31 0.92 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.09 1.17 5.88 -51.93 -0.31 0.87 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.12 2.25 6.41 -52.49 -0.34 1.91 16 40 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 41 H 0.03 0.71 8.05 -51.93 -0.42 0.29 16 42 H 0.03 0.90 6.14 -51.93 -0.32 0.59 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -31.02 350.15 -7.92 -38.94 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.55 Total: 3.87 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -1.70 Total: -15.73 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.66 Total: -34.43 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.59 Total: -14.51 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.02 -7.92 -38.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.038 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds