Wall clock time and date at job start Tue Mar 31 2020 06:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38145 * 119.96268 * 2 1 4 4 C 1.38842 * 119.93037 * 180.02562 * 3 2 1 5 5 N 1.39948 * 120.06885 * 179.97438 * 4 3 2 6 6 C 1.34779 * 120.00237 * 213.27583 * 5 4 3 7 7 O 1.21513 * 119.99668 * 5.31505 * 6 5 4 8 8 O 1.34646 * 120.00372 * 185.31650 * 6 5 4 9 9 C 1.45192 * 117.00299 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46782 * 60.00026 * 9 8 6 11 11 C 1.52994 * 109.47355 * 179.97438 * 9 8 6 12 12 C 1.53002 * 109.47125 * 300.00224 * 9 8 6 13 13 C 1.38879 * 119.86093 * 359.97438 * 4 3 2 14 14 C 1.38097 * 119.93232 * 0.02562 * 13 4 3 15 15 C 1.38256 * 119.97144 * 180.25488 * 2 1 3 16 16 C 1.50698 * 119.92817 * 0.02562 * 15 2 1 17 17 C 1.50709 * 109.46911 * 85.23686 * 16 15 2 18 18 H 1.07989 * 120.00030 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99589 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00596 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99488 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46999 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47185 * 119.99758 * 21 19 17 24 24 H 1.48496 * 109.46743 * 239.99218 * 21 19 17 25 25 H 1.09005 * 109.47077 * 90.00529 * 1 2 3 26 26 H 1.08996 * 109.46717 * 209.99783 * 1 2 3 27 27 H 1.08995 * 109.47341 * 329.99892 * 1 2 3 28 28 H 1.08001 * 120.02948 * 359.97277 * 3 2 1 29 29 H 0.97006 * 120.00218 * 33.27320 * 5 4 3 30 30 H 1.09000 * 109.47642 * 60.00116 * 10 9 8 31 31 H 1.09005 * 109.46711 * 179.97438 * 10 9 8 32 32 H 1.08999 * 109.47014 * 299.99454 * 10 9 8 33 33 H 1.09003 * 109.47383 * 60.00303 * 11 9 8 34 34 H 1.09005 * 109.47431 * 179.97438 * 11 9 8 35 35 H 1.09008 * 109.47533 * 299.99768 * 11 9 8 36 36 H 1.08994 * 109.47121 * 60.00122 * 12 9 8 37 37 H 1.09005 * 109.47119 * 180.02562 * 12 9 8 38 38 H 1.09003 * 109.47019 * 299.99333 * 12 9 8 39 39 H 1.07998 * 120.03705 * 180.02562 * 13 4 3 40 40 H 1.08002 * 119.96861 * 179.97438 * 14 13 4 41 41 H 1.08995 * 109.47389 * 205.23498 * 16 15 2 42 42 H 1.08995 * 109.47277 * 325.23944 * 16 15 2 43 43 H 0.96996 * 119.99864 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1968 0.0000 4 6 3.5854 1.1960 -0.0005 5 7 4.2872 2.4068 -0.0011 6 6 5.4692 2.5003 -0.6420 7 8 5.8794 1.5644 -1.2996 8 8 6.1955 3.6306 -0.5536 9 6 7.4584 3.6604 -1.2692 10 6 7.2030 3.4516 -2.7632 11 6 8.1356 5.0151 -1.0525 12 6 8.3672 2.5459 -0.7465 13 6 4.2761 -0.0088 -0.0005 14 6 3.5807 -1.2018 -0.0005 15 6 2.1977 -1.1977 -0.0053 16 6 1.4419 -2.5014 -0.0117 17 6 1.0885 -2.8702 -1.4296 18 1 1.3814 -2.2249 -2.2444 19 6 0.3902 -4.0310 -1.6863 20 7 0.0329 -4.8167 -0.6939 21 14 -0.0486 -4.4877 -3.4437 22 1 0.4636 -3.4450 -4.3687 23 1 0.5659 -5.7963 -3.7832 24 1 -1.5244 -4.5848 -3.5761 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6568 2.1321 -0.0004 29 1 3.9230 3.1788 0.4598 30 1 6.5556 4.2455 -3.1357 31 1 8.1512 3.4744 -3.3005 32 1 6.7205 2.4866 -2.9179 33 1 8.3176 5.1643 0.0118 34 1 9.0840 5.0373 -1.5894 35 1 7.4881 5.8088 -1.4253 36 1 7.8845 1.5810 -0.9013 37 1 9.3155 2.5686 -1.2835 38 1 8.5491 2.6947 0.3179 39 1 5.3561 -0.0127 -0.0005 40 1 4.1173 -2.1391 -0.0010 41 1 2.0637 -3.2840 0.4230 42 1 0.5291 -2.3951 0.5743 43 1 -0.4580 -5.6335 -0.8747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:03 Heat of formation + Delta-G solvation = -87.788160 kcal Electronic energy + Delta-G solvation = -23138.078587 eV Core-core repulsion = 19761.115846 eV Total energy + Delta-G solvation = -3376.962741 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.14333 -40.52667 -38.45066 -36.39569 -35.28483 -34.73461 -33.25992 -32.16790 -28.89245 -28.36747 -28.28730 -27.54464 -25.40920 -23.80446 -23.04082 -21.46115 -20.87566 -19.36160 -18.48754 -18.13996 -17.42761 -17.08546 -16.75958 -16.34116 -15.86830 -15.62887 -15.32569 -14.83694 -14.71491 -14.42760 -14.08630 -13.96326 -13.51008 -13.38095 -13.31487 -13.24916 -12.99514 -12.90510 -12.86333 -12.85447 -12.54632 -12.46927 -12.35682 -12.31083 -11.90184 -11.61250 -11.43049 -11.40556 -11.10469 -10.89602 -10.55893 -9.57908 -8.88081 -8.15982 -6.28640 0.40446 0.53921 1.05376 1.38765 1.40237 1.53001 1.71316 2.41147 2.95534 3.05869 3.13642 3.74454 3.79410 3.94312 3.99323 4.09384 4.34188 4.42330 4.50616 4.54897 4.60435 4.61989 4.77146 4.77441 4.85227 4.89194 4.92864 4.94326 5.04286 5.14554 5.26555 5.28914 5.29246 5.31690 5.36139 5.45684 5.47925 5.59023 5.68445 5.80252 6.12209 6.13724 6.27424 6.33657 6.83410 7.26083 7.39009 8.92003 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.003320 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.153420 B = 8431.223408 C = 8892.915552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.077 4.077 3 C -0.129 4.129 4 C 0.137 3.863 5 N -0.636 5.636 6 C 0.646 3.354 7 O -0.575 6.575 8 O -0.360 6.360 9 C 0.125 3.875 10 C -0.183 4.183 11 C -0.134 4.134 12 C -0.183 4.183 13 C -0.128 4.128 14 C -0.117 4.117 15 C -0.076 4.076 16 C 0.059 3.941 17 C -0.517 4.517 18 H 0.048 0.952 19 C 0.007 3.993 20 N -0.928 5.928 21 Si 0.958 3.042 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.274 1.274 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.159 0.841 29 H 0.429 0.571 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.125 0.875 40 H 0.112 0.888 41 H -0.004 1.004 42 H 0.020 0.980 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.896 21.969 1.306 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.077 4.077 3 C -0.149 4.149 4 C 0.045 3.955 5 N -0.289 5.289 6 C 0.401 3.599 7 O -0.464 6.464 8 O -0.274 6.274 9 C 0.089 3.911 10 C -0.240 4.240 11 C -0.191 4.191 12 C -0.240 4.240 13 C -0.148 4.148 14 C -0.135 4.135 15 C -0.077 4.077 16 C 0.022 3.978 17 C -0.555 4.555 18 H 0.067 0.933 19 C -0.191 4.191 20 N -0.569 5.569 21 Si 0.783 3.217 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.199 1.199 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.176 0.824 29 H 0.268 0.732 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.015 0.985 42 H 0.038 0.962 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.147 21.469 1.007 25.195 hybrid contribution -0.367 -0.813 -0.628 1.091 sum 12.779 20.656 0.379 24.293 Atomic orbital electron populations 1.20715 0.90137 1.02722 1.02316 1.19758 0.97027 0.91615 0.99347 1.20830 0.91157 0.98680 1.04202 1.17270 0.90680 0.83993 1.03594 1.41809 1.18769 1.13442 1.54918 1.18193 0.81386 0.81752 0.78609 1.90953 1.71325 1.40077 1.44032 1.86308 1.34608 1.36590 1.69939 1.22476 0.78730 0.98796 0.91089 1.22498 1.04000 1.02947 0.94532 1.21886 1.00924 0.92298 1.03961 1.22501 1.00491 0.98946 1.02045 1.20966 0.99984 0.91181 1.02670 1.20919 0.93753 0.97696 1.01176 1.20347 0.93906 0.96368 0.97039 1.18113 0.94199 0.89180 0.96294 1.21309 1.35076 1.06365 0.92797 0.93339 1.25819 0.95774 0.96239 1.01230 1.70072 1.40113 1.13766 1.32932 0.85495 0.78168 0.78091 0.79911 1.19346 1.20478 1.19895 0.91769 0.92719 0.89184 0.82385 0.73170 0.91708 0.88937 0.92483 0.90926 0.87882 0.90929 0.92329 0.88940 0.91649 0.85746 0.86985 0.98548 0.96174 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.54 9.59 71.24 0.68 -2.86 16 2 C -0.08 -2.91 5.88 -19.88 -0.12 -3.03 16 3 C -0.13 -3.94 9.62 22.39 0.22 -3.73 16 4 C 0.14 4.37 6.28 38.14 0.24 4.61 16 5 N -0.64 -15.97 5.35 -429.46 -2.30 -18.27 16 6 C 0.65 17.99 7.79 129.79 1.01 19.00 16 7 O -0.57 -19.57 9.57 19.80 0.19 -19.38 16 8 O -0.36 -8.14 9.94 -55.56 -0.55 -8.69 16 9 C 0.13 2.31 1.13 -10.79 -0.01 2.30 16 10 C -0.18 -3.54 8.37 71.98 0.60 -2.94 16 11 C -0.13 -1.47 8.85 71.98 0.64 -0.83 16 12 C -0.18 -3.47 8.37 71.98 0.60 -2.87 16 13 C -0.13 -4.75 8.65 22.39 0.19 -4.56 16 14 C -0.12 -4.94 9.67 22.25 0.22 -4.72 16 15 C -0.08 -3.42 5.07 -19.85 -0.10 -3.52 16 16 C 0.06 3.15 4.61 29.10 0.13 3.28 16 17 C -0.52 -29.71 9.09 25.60 0.23 -29.48 16 18 H 0.05 2.80 7.74 -2.92 -0.02 2.78 16 19 C 0.01 0.43 5.46 84.65 0.46 0.89 16 20 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 21 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 25 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 26 H 0.05 2.16 6.02 -2.39 -0.01 2.14 16 27 H 0.09 2.32 8.08 -2.39 -0.02 2.30 16 28 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 29 H 0.43 7.47 8.93 -92.70 -0.83 6.64 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.06 1.52 5.88 -2.39 -0.01 1.51 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.06 1.52 5.88 -2.39 -0.01 1.50 16 37 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.12 4.59 6.41 -2.91 -0.02 4.57 16 40 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 41 H 0.00 -0.22 8.05 -2.39 -0.02 -0.24 16 42 H 0.02 1.12 6.14 -2.39 -0.01 1.10 16 43 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -69.68 350.15 4.84 -64.85 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.18 Total: 18.61 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 5.00 Total: -28.47 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -2.01 Total: -73.87 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.36 Total: -28.08 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -69.68 4.84 -64.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.941 kcal (2) G-P(sol) polarization free energy of solvation -69.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds