Wall clock time and date at job start Tue Mar 31 2020 06:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38160 * 120.02685 * 2 1 4 4 C 1.38245 * 120.05505 * 179.97438 * 3 2 1 5 5 C 1.38287 * 120.11362 * 0.02562 * 4 3 2 6 6 C 1.38124 * 120.05266 * 359.67940 * 5 4 3 7 7 C 1.38717 * 120.02840 * 179.97438 * 2 1 3 8 8 O 1.35901 * 120.05611 * 0.02562 * 7 2 1 9 9 C 1.42895 * 117.00296 * 180.02562 * 8 7 2 10 10 C 1.52992 * 109.47606 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47482 * 180.02562 * 10 9 8 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.47477 * 111.00047 * 265.97286 * 12 11 10 14 14 C 1.53513 * 87.92932 * 221.29743 * 13 12 11 15 15 O 1.42902 * 114.16794 * 272.37323 * 14 13 12 16 16 C 1.50700 * 114.34648 * 139.68711 * 14 13 12 17 17 H 1.08005 * 119.99583 * 266.07840 * 16 14 13 18 18 C 1.37877 * 120.00435 * 86.06645 * 16 14 13 19 19 N 1.31512 * 120.00079 * 180.02562 * 18 16 14 20 20 Si 1.86799 * 119.99673 * 0.02562 * 18 16 14 21 21 H 1.48506 * 109.47230 * 89.99718 * 20 18 16 22 22 H 1.48498 * 109.47149 * 209.99489 * 20 18 16 23 23 H 1.48497 * 109.47291 * 329.99574 * 20 18 16 24 24 C 1.47481 * 111.00017 * 169.99694 * 12 11 10 25 25 H 1.08996 * 109.47619 * 270.01947 * 1 2 3 26 26 H 1.08999 * 109.46880 * 30.03230 * 1 2 3 27 27 H 1.09011 * 109.46748 * 150.01933 * 1 2 3 28 28 H 1.07995 * 119.97649 * 359.97438 * 3 2 1 29 29 H 1.08006 * 119.94729 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.97257 * 179.97438 * 5 4 3 31 31 H 1.08006 * 120.02973 * 180.32004 * 6 5 4 32 32 H 1.09002 * 109.47063 * 60.00108 * 9 8 7 33 33 H 1.09001 * 109.46798 * 300.00375 * 9 8 7 34 34 H 1.09002 * 109.47103 * 59.99788 * 10 9 8 35 35 H 1.08998 * 109.46862 * 300.00600 * 10 9 8 36 36 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 37 37 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 38 38 H 1.09000 * 113.47846 * 336.05901 * 13 12 11 39 39 H 1.08998 * 113.47506 * 106.53321 * 13 12 11 40 40 H 0.96702 * 114.00480 * 273.83796 * 15 14 13 41 41 H 0.96998 * 119.99706 * 180.02562 * 19 18 16 42 42 H 1.09000 * 113.47744 * 253.47034 * 24 12 11 43 43 H 1.08996 * 113.47276 * 23.88258 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0005 5 6 4.2752 0.0010 0.0005 6 6 3.5887 -1.1975 0.0067 7 6 2.2012 -1.2010 0.0005 8 8 1.5234 -2.3789 0.0005 9 6 2.3034 -3.5762 0.0017 10 6 1.3733 -4.7909 0.0009 11 6 2.2084 -6.0729 0.0027 12 7 1.3152 -7.2392 0.0025 13 6 1.0691 -7.7166 1.3760 14 6 1.2035 -9.1497 0.8424 15 8 -0.0164 -9.7072 0.3494 16 6 1.9592 -10.0832 1.7526 17 1 3.0197 -10.2326 1.6129 18 6 1.2969 -10.7464 2.7638 19 7 1.9565 -11.5607 3.5585 20 14 -0.5373 -10.4883 3.0051 21 1 -1.2878 -11.4838 2.1981 22 1 -0.8765 -10.6581 4.4409 23 1 -0.9061 -9.1177 2.5682 24 6 2.0707 -8.4834 -0.2349 25 1 -0.3634 0.0003 1.0276 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3633 -0.8903 -0.5136 28 1 1.6584 2.1315 -0.0004 29 1 4.1195 2.1330 0.0001 30 1 5.3552 0.0042 0.0005 31 1 4.1314 -2.1313 0.0119 32 1 2.9315 -3.5998 0.8922 33 1 2.9330 -3.6005 -0.8878 34 1 0.7454 -4.7672 -0.8899 35 1 0.7433 -4.7667 0.8900 36 1 2.8359 -6.0964 0.8936 37 1 2.8386 -6.0972 -0.8863 38 1 1.8545 -7.4397 2.0793 39 1 0.0705 -7.4824 1.7447 40 1 -0.5607 -10.1264 1.0299 41 1 1.4905 -12.0275 4.2696 42 1 1.9208 -8.8989 -1.2313 43 1 3.1235 -8.4107 0.0376 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307710045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:16 Heat of formation + Delta-G solvation = -18.195524 kcal Electronic energy + Delta-G solvation = -22533.274496 eV Core-core repulsion = 19159.329518 eV Total energy + Delta-G solvation = -3373.944978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.41189 -39.56718 -37.73071 -35.29404 -33.30836 -32.66601 -32.44008 -30.17410 -28.29189 -26.94338 -25.87135 -25.23434 -23.53168 -21.88830 -21.70495 -20.70308 -19.13708 -18.18700 -17.32102 -16.48725 -16.24085 -16.16531 -15.85054 -15.21133 -14.79983 -14.65535 -14.07308 -13.75637 -13.66366 -13.33360 -13.28765 -13.16218 -12.70442 -12.48441 -12.46378 -12.16050 -12.04749 -11.65727 -11.56192 -11.46902 -11.14778 -10.90110 -10.83898 -10.76352 -10.46553 -10.26692 -9.98549 -9.27610 -9.06169 -8.94544 -8.58132 -8.30031 -8.17197 -6.36014 -4.40304 1.08717 1.23405 3.01153 3.05535 3.13730 3.20682 3.53276 4.10552 4.50529 4.55363 4.63036 4.78382 4.83528 4.84477 4.96951 5.05058 5.13458 5.19084 5.27449 5.29634 5.43255 5.44640 5.52208 5.60677 5.64323 5.74229 5.75216 5.86413 6.01202 6.03792 6.13200 6.21009 6.22761 6.29819 6.33064 6.44604 6.59872 6.60888 6.84064 6.90094 7.26846 7.29901 7.71864 8.10337 8.65830 8.66651 9.23341 10.76496 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029528 B = 0.002666 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.030180 B =10499.789838 C =10731.483726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.121 4.121 3 C -0.085 4.085 4 C -0.160 4.160 5 C -0.087 4.087 6 C -0.207 4.207 7 C 0.133 3.867 8 O -0.310 6.310 9 C 0.061 3.939 10 C -0.107 4.107 11 C 0.021 3.979 12 N -0.471 5.471 13 C -0.034 4.034 14 C 0.203 3.797 15 O -0.548 6.548 16 C -0.534 4.534 17 H 0.086 0.914 18 C 0.077 3.923 19 N -0.882 5.882 20 Si 0.861 3.139 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.254 1.254 24 C 0.019 3.981 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.348 0.652 41 H 0.269 0.731 42 H 0.077 0.923 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 22.696 -5.966 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.121 4.121 3 C -0.104 4.104 4 C -0.178 4.178 5 C -0.105 4.105 6 C -0.225 4.225 7 C 0.087 3.913 8 O -0.224 6.224 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.108 4.108 12 N -0.193 5.193 13 C -0.164 4.164 14 C 0.162 3.838 15 O -0.359 6.359 16 C -0.572 4.572 17 H 0.104 0.896 18 C -0.128 4.128 19 N -0.518 5.518 20 Si 0.690 3.310 21 H -0.194 1.194 22 H -0.213 1.213 23 H -0.179 1.179 24 C -0.110 4.110 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.200 0.800 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.993 22.962 -6.805 23.970 hybrid contribution 0.015 -0.304 1.358 1.392 sum 1.008 22.659 -5.447 23.326 Atomic orbital electron populations 1.20616 0.90484 1.02791 1.02357 1.19314 0.96639 0.90401 1.05770 1.20876 0.94144 0.96720 0.98613 1.21022 0.94231 0.98028 1.04508 1.20936 0.99771 0.91899 0.97863 1.21308 0.93094 0.99613 1.08528 1.18888 0.90424 0.85897 0.96065 1.86066 1.35989 1.12218 1.88084 1.22868 0.94595 0.82710 1.01267 1.21371 0.98249 0.90605 1.04280 1.22533 0.95077 0.92112 1.01073 1.68844 1.31191 1.00668 1.18617 1.25039 1.01252 0.99614 0.90479 1.20069 0.82882 0.89301 0.91587 1.86462 1.34167 1.76775 1.38499 1.21309 0.97458 1.25516 1.12938 0.89556 1.25019 0.98347 0.94150 0.95249 1.69868 1.36457 1.27235 1.18235 0.87278 0.85949 0.79946 0.77822 1.19373 1.21289 1.17912 1.23911 0.96692 0.89686 1.00703 0.91390 0.91819 0.90967 0.85558 0.86055 0.85914 0.85367 0.92044 0.92033 0.90251 0.90878 0.93620 0.91351 0.90898 0.91234 0.80016 0.92048 0.90424 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.79 36.01 0.35 -0.64 16 2 C -0.12 -1.31 5.89 -104.47 -0.62 -1.93 16 3 C -0.09 -0.78 9.70 -39.61 -0.38 -1.17 16 4 C -0.16 -1.40 10.04 -39.56 -0.40 -1.79 16 5 C -0.09 -0.80 10.04 -39.61 -0.40 -1.20 16 6 C -0.21 -2.21 9.04 -39.43 -0.36 -2.57 16 7 C 0.13 1.61 6.66 -39.22 -0.26 1.35 16 8 O -0.31 -4.03 9.18 -19.43 -0.18 -4.20 16 9 C 0.06 0.71 4.74 37.15 0.18 0.89 16 10 C -0.11 -1.45 5.91 -26.74 -0.16 -1.61 16 11 C 0.02 0.32 4.82 -3.83 -0.02 0.30 16 12 N -0.47 -9.07 6.33 -244.62 -1.55 -10.62 16 13 C -0.03 -0.73 6.55 -7.54 -0.05 -0.78 16 14 C 0.20 4.84 1.09 -91.24 -0.10 4.74 16 15 O -0.55 -13.61 13.32 -35.23 -0.47 -14.08 16 16 C -0.53 -14.47 9.27 -34.44 -0.32 -14.79 16 17 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 18 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.88 -25.57 13.96 55.43 0.77 -24.80 16 20 Si 0.86 20.02 24.41 -169.99 -4.15 15.87 16 21 H -0.27 -6.02 7.06 56.52 0.40 -5.62 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.25 -5.68 5.46 56.52 0.31 -5.37 16 24 C 0.02 0.38 7.09 -7.54 -0.05 0.33 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 27 H 0.07 0.75 7.53 -51.92 -0.39 0.36 16 28 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 29 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 30 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.13 1.22 6.30 -52.48 -0.33 0.88 16 32 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 33 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.68 7.30 -51.93 -0.38 0.30 16 37 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.07 1.51 7.38 -51.93 -0.38 1.13 16 39 H 0.07 1.50 7.11 -51.93 -0.37 1.13 16 40 H 0.35 8.30 3.17 45.56 0.14 8.44 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 43 H 0.07 1.40 7.87 -51.93 -0.41 1.00 16 LS Contribution 344.20 15.07 5.19 5.19 Total: -1.00 -30.07 344.20 -9.43 -39.50 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.37 Total: 10.00 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -2.68 Total: -16.87 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.78 Total: -35.42 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.65 Total: -18.28 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.15 Total: 15.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.07 -9.43 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307710045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.307 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds